Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|5051
Gene name
Locationscaffold_405:1331..2486
Strand-
Gene length (bp)1155
Transcript length (bp)1155
Coding sequence length (bp)1152
Protein length (aa) 384

Your browser does not support drawing a protein figure.

PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 27 0.5

Transmembrane Domains

Domain # Start End Length
1 2 24 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 4.68 1.16 8.20
CcL In ants, during behavior modification 21.80 7.67 35.93
CcD In ants, recently dead 7.94 2.50 13.38

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 0.000286 yes
SC16a CcD 0.134234 no
CcL CcD 0.000770 yes

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|5051
MYSLGPSFVVTFIVIVLLCLPSRVFRRYLRQLFKTHLKAVLDSPHLDASLGAPLSVYNQITLSPSSTPLPPWNES
YSHSNKHPMMSAPADMGSFETVILNGPGDWRRWMAQIQRLASENGIWPLVDPSAADKPVLTRPCEPKASQVNPEA
EGPEDLNGYEIHKLEFLYSAYRVQRMDFEKKERALSALNLVVVKTVGRYYNLVAGQQDVVASLALLKDRVQPSDW
AIRMEARNRYRALLRCPDMSKIEDWVDSWQLALDEATALDLPDVQGLLPTQDFLQAVSSIDPCFATFWMQTIEHR
ALENNENWESSIPCGIKISEIFSRTARVNAAAKTPSTDLRLEAYPKCDAHKLQTHFGTLPLHPSTSSFLTGGEDP
QLQIGRHAS
Coding >Ophio5|5051
ATGTATTCCCTCGGTCCTTCATTTGTTGTCACCTTTATCGTGATCGTTCTACTCTGCTTGCCGAGTCGGGTTTTC
AGACGCTATCTTCGGCAGCTTTTTAAAACGCATCTTAAAGCTGTTCTCGACTCTCCTCACCTTGACGCCTCTCTG
GGGGCTCCTCTCAGCGTCTACAACCAAATCACCCTATCACCCTCTTCGACGCCGCTTCCGCCTTGGAACGAGTCG
TATTCTCACTCAAATAAGCATCCTATGATGTCGGCGCCGGCGGACATGGGCTCTTTCGAGACAGTTATTCTCAAT
GGTCCTGGTGATTGGAGAAGATGGATGGCCCAGATCCAAAGACTTGCATCGGAAAACGGCATCTGGCCTCTAGTT
GATCCTTCTGCTGCGGACAAGCCAGTCCTCACAAGACCTTGCGAACCCAAAGCCTCCCAAGTGAACCCAGAAGCT
GAAGGACCAGAAGATCTAAATGGCTATGAGATTCACAAGCTCGAATTTCTCTACTCGGCATACCGCGTCCAAAGG
ATGGATTTCGAGAAGAAAGAGAGGGCCCTGTCAGCCCTCAATCTTGTCGTCGTCAAGACCGTCGGCCGATACTAC
AACTTAGTCGCTGGCCAACAAGATGTCGTTGCCTCTCTGGCGCTCCTCAAGGATAGGGTACAGCCATCAGACTGG
GCCATAAGGATGGAAGCTCGAAACCGTTACCGGGCCCTTCTCAGATGTCCCGATATGTCCAAGATCGAGGACTGG
GTCGACTCTTGGCAGTTGGCCCTCGACGAGGCTACGGCATTGGATCTGCCGGATGTCCAGGGACTTCTACCTACT
CAGGACTTTCTGCAGGCCGTATCGTCGATTGATCCGTGTTTCGCAACCTTTTGGATGCAAACGATCGAGCACCGA
GCCTTGGAGAACAATGAAAATTGGGAAAGCTCTATTCCTTGCGGGATCAAAATTAGCGAAATTTTCAGCAGGACT
GCCAGGGTTAATGCTGCTGCTAAGACGCCTTCAACAGACTTGAGACTCGAAGCCTACCCTAAATGCGATGCTCAC
AAGTTGCAGACACACTTCGGAACGCTTCCGCTGCACCCCAGCACGAGCAGTTTCCTAACAGGGGGGGAGGATCCC
CAGCTGCAGATTGGGAGACATGCCAGC
Transcript >Ophio5|5051
ATGTATTCCCTCGGTCCTTCATTTGTTGTCACCTTTATCGTGATCGTTCTACTCTGCTTGCCGAGTCGGGTTTTC
AGACGCTATCTTCGGCAGCTTTTTAAAACGCATCTTAAAGCTGTTCTCGACTCTCCTCACCTTGACGCCTCTCTG
GGGGCTCCTCTCAGCGTCTACAACCAAATCACCCTATCACCCTCTTCGACGCCGCTTCCGCCTTGGAACGAGTCG
TATTCTCACTCAAATAAGCATCCTATGATGTCGGCGCCGGCGGACATGGGCTCTTTCGAGACAGTTATTCTCAAT
GGTCCTGGTGATTGGAGAAGATGGATGGCCCAGATCCAAAGACTTGCATCGGAAAACGGCATCTGGCCTCTAGTT
GATCCTTCTGCTGCGGACAAGCCAGTCCTCACAAGACCTTGCGAACCCAAAGCCTCCCAAGTGAACCCAGAAGCT
GAAGGACCAGAAGATCTAAATGGCTATGAGATTCACAAGCTCGAATTTCTCTACTCGGCATACCGCGTCCAAAGG
ATGGATTTCGAGAAGAAAGAGAGGGCCCTGTCAGCCCTCAATCTTGTCGTCGTCAAGACCGTCGGCCGATACTAC
AACTTAGTCGCTGGCCAACAAGATGTCGTTGCCTCTCTGGCGCTCCTCAAGGATAGGGTACAGCCATCAGACTGG
GCCATAAGGATGGAAGCTCGAAACCGTTACCGGGCCCTTCTCAGATGTCCCGATATGTCCAAGATCGAGGACTGG
GTCGACTCTTGGCAGTTGGCCCTCGACGAGGCTACGGCATTGGATCTGCCGGATGTCCAGGGACTTCTACCTACT
CAGGACTTTCTGCAGGCCGTATCGTCGATTGATCCGTGTTTCGCAACCTTTTGGATGCAAACGATCGAGCACCGA
GCCTTGGAGAACAATGAAAATTGGGAAAGCTCTATTCCTTGCGGGATCAAAATTAGCGAAATTTTCAGCAGGACT
GCCAGGGTTAATGCTGCTGCTAAGACGCCTTCAACAGACTTGAGACTCGAAGCCTACCCTAAATGCGATGCTCAC
AAGTTGCAGACACACTTCGGAACGCTTCCGCTGCACCCCAGCACGAGCAGTTTCCTAACAGGGGGGGAGGATCCC
CAGCTGCAGATTGGGAGACATGCCAGCTAG
Gene >Ophio5|5051
ATGTATTCCCTCGGTCCTTCATTTGTTGTCACCTTTATCGTGATCGTTCTACTCTGCTTGCCGAGTCGGGTTTTC
AGACGCTATCTTCGGCAGCTTTTTAAAACGCATCTTAAAGCTGTTCTCGACTCTCCTCACCTTGACGCCTCTCTG
GGGGCTCCTCTCAGCGTCTACAACCAAATCACCCTATCACCCTCTTCGACGCCGCTTCCGCCTTGGAACGAGTCG
TATTCTCACTCAAATAAGCATCCTATGATGTCGGCGCCGGCGGACATGGGCTCTTTCGAGACAGTTATTCTCAAT
GGTCCTGGTGATTGGAGAAGATGGATGGCCCAGATCCAAAGACTTGCATCGGAAAACGGCATCTGGCCTCTAGTT
GATCCTTCTGCTGCGGACAAGCCAGTCCTCACAAGACCTTGCGAACCCAAAGCCTCCCAAGTGAACCCAGAAGCT
GAAGGACCAGAAGATCTAAATGGCTATGAGATTCACAAGCTCGAATTTCTCTACTCGGCATACCGCGTCCAAAGG
ATGGATTTCGAGAAGAAAGAGAGGGCCCTGTCAGCCCTCAATCTTGTCGTCGTCAAGACCGTCGGCCGATACTAC
AACTTAGTCGCTGGCCAACAAGATGTCGTTGCCTCTCTGGCGCTCCTCAAGGATAGGGTACAGCCATCAGACTGG
GCCATAAGGATGGAAGCTCGAAACCGTTACCGGGCCCTTCTCAGATGTCCCGATATGTCCAAGATCGAGGACTGG
GTCGACTCTTGGCAGTTGGCCCTCGACGAGGCTACGGCATTGGATCTGCCGGATGTCCAGGGACTTCTACCTACT
CAGGACTTTCTGCAGGCCGTATCGTCGATTGATCCGTGTTTCGCAACCTTTTGGATGCAAACGATCGAGCACCGA
GCCTTGGAGAACAATGAAAATTGGGAAAGCTCTATTCCTTGCGGGATCAAAATTAGCGAAATTTTCAGCAGGACT
GCCAGGGTTAATGCTGCTGCTAAGACGCCTTCAACAGACTTGAGACTCGAAGCCTACCCTAAATGCGATGCTCAC
AAGTTGCAGACACACTTCGGAACGCTTCCGCTGCACCCCAGCACGAGCAGTTTCCTAACAGGGGGGGAGGATCCC
CAGCTGCAGATTGGGAGACATGCCAGCTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail