Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophio5\|5051
Gene name
Location	scaffold_405:1331..2486
Strand	-
Gene length (bp)	1155
Transcript length (bp)	1155
Coding sequence length (bp)	1152
Protein length (aa)	384

PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 27	0.5

Transmembrane Domains

Domain #	Start	End	Length
1	2	24	22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
SC16a	Pure fungal culture	4.68	1.16	8.20
CcL	In ants, during behavior modification	21.80	7.67	35.93
CcD	In ants, recently dead	7.94	2.50	13.38

Differential expression

Label1	Label2	Q-value	Significant difference
SC16a	CcL	0.000286	yes
SC16a	CcD	0.134234	no
CcL	CcD	0.000770	yes

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophio5\|5051 MYSLGPSFVVTFIVIVLLCLPSRVFRRYLRQLFKTHLKAVLDSPHLDASLGAPLSVYNQITLSPSSTPLPPWNES YSHSNKHPMMSAPADMGSFETVILNGPGDWRRWMAQIQRLASENGIWPLVDPSAADKPVLTRPCEPKASQVNPEA EGPEDLNGYEIHKLEFLYSAYRVQRMDFEKKERALSALNLVVVKTVGRYYNLVAGQQDVVASLALLKDRVQPSDW AIRMEARNRYRALLRCPDMSKIEDWVDSWQLALDEATALDLPDVQGLLPTQDFLQAVSSIDPCFATFWMQTIEHR ALENNENWESSIPCGIKISEIFSRTARVNAAAKTPSTDLRLEAYPKCDAHKLQTHFGTLPLHPSTSSFLTGGEDP QLQIGRHAS
Coding	>Ophio5\|5051 ATGTATTCCCTCGGTCCTTCATTTGTTGTCACCTTTATCGTGATCGTTCTACTCTGCTTGCCGAGTCGGGTTTTC AGACGCTATCTTCGGCAGCTTTTTAAAACGCATCTTAAAGCTGTTCTCGACTCTCCTCACCTTGACGCCTCTCTG GGGGCTCCTCTCAGCGTCTACAACCAAATCACCCTATCACCCTCTTCGACGCCGCTTCCGCCTTGGAACGAGTCG TATTCTCACTCAAATAAGCATCCTATGATGTCGGCGCCGGCGGACATGGGCTCTTTCGAGACAGTTATTCTCAAT GGTCCTGGTGATTGGAGAAGATGGATGGCCCAGATCCAAAGACTTGCATCGGAAAACGGCATCTGGCCTCTAGTT GATCCTTCTGCTGCGGACAAGCCAGTCCTCACAAGACCTTGCGAACCCAAAGCCTCCCAAGTGAACCCAGAAGCT GAAGGACCAGAAGATCTAAATGGCTATGAGATTCACAAGCTCGAATTTCTCTACTCGGCATACCGCGTCCAAAGG ATGGATTTCGAGAAGAAAGAGAGGGCCCTGTCAGCCCTCAATCTTGTCGTCGTCAAGACCGTCGGCCGATACTAC AACTTAGTCGCTGGCCAACAAGATGTCGTTGCCTCTCTGGCGCTCCTCAAGGATAGGGTACAGCCATCAGACTGG GCCATAAGGATGGAAGCTCGAAACCGTTACCGGGCCCTTCTCAGATGTCCCGATATGTCCAAGATCGAGGACTGG GTCGACTCTTGGCAGTTGGCCCTCGACGAGGCTACGGCATTGGATCTGCCGGATGTCCAGGGACTTCTACCTACT CAGGACTTTCTGCAGGCCGTATCGTCGATTGATCCGTGTTTCGCAACCTTTTGGATGCAAACGATCGAGCACCGA GCCTTGGAGAACAATGAAAATTGGGAAAGCTCTATTCCTTGCGGGATCAAAATTAGCGAAATTTTCAGCAGGACT GCCAGGGTTAATGCTGCTGCTAAGACGCCTTCAACAGACTTGAGACTCGAAGCCTACCCTAAATGCGATGCTCAC AAGTTGCAGACACACTTCGGAACGCTTCCGCTGCACCCCAGCACGAGCAGTTTCCTAACAGGGGGGGAGGATCCC CAGCTGCAGATTGGGAGACATGCCAGC
Transcript	>Ophio5\|5051 ATGTATTCCCTCGGTCCTTCATTTGTTGTCACCTTTATCGTGATCGTTCTACTCTGCTTGCCGAGTCGGGTTTTC AGACGCTATCTTCGGCAGCTTTTTAAAACGCATCTTAAAGCTGTTCTCGACTCTCCTCACCTTGACGCCTCTCTG GGGGCTCCTCTCAGCGTCTACAACCAAATCACCCTATCACCCTCTTCGACGCCGCTTCCGCCTTGGAACGAGTCG TATTCTCACTCAAATAAGCATCCTATGATGTCGGCGCCGGCGGACATGGGCTCTTTCGAGACAGTTATTCTCAAT GGTCCTGGTGATTGGAGAAGATGGATGGCCCAGATCCAAAGACTTGCATCGGAAAACGGCATCTGGCCTCTAGTT GATCCTTCTGCTGCGGACAAGCCAGTCCTCACAAGACCTTGCGAACCCAAAGCCTCCCAAGTGAACCCAGAAGCT GAAGGACCAGAAGATCTAAATGGCTATGAGATTCACAAGCTCGAATTTCTCTACTCGGCATACCGCGTCCAAAGG ATGGATTTCGAGAAGAAAGAGAGGGCCCTGTCAGCCCTCAATCTTGTCGTCGTCAAGACCGTCGGCCGATACTAC AACTTAGTCGCTGGCCAACAAGATGTCGTTGCCTCTCTGGCGCTCCTCAAGGATAGGGTACAGCCATCAGACTGG GCCATAAGGATGGAAGCTCGAAACCGTTACCGGGCCCTTCTCAGATGTCCCGATATGTCCAAGATCGAGGACTGG GTCGACTCTTGGCAGTTGGCCCTCGACGAGGCTACGGCATTGGATCTGCCGGATGTCCAGGGACTTCTACCTACT CAGGACTTTCTGCAGGCCGTATCGTCGATTGATCCGTGTTTCGCAACCTTTTGGATGCAAACGATCGAGCACCGA GCCTTGGAGAACAATGAAAATTGGGAAAGCTCTATTCCTTGCGGGATCAAAATTAGCGAAATTTTCAGCAGGACT GCCAGGGTTAATGCTGCTGCTAAGACGCCTTCAACAGACTTGAGACTCGAAGCCTACCCTAAATGCGATGCTCAC AAGTTGCAGACACACTTCGGAACGCTTCCGCTGCACCCCAGCACGAGCAGTTTCCTAACAGGGGGGGAGGATCCC CAGCTGCAGATTGGGAGACATGCCAGCTAG
Gene	>Ophio5\|5051 ATGTATTCCCTCGGTCCTTCATTTGTTGTCACCTTTATCGTGATCGTTCTACTCTGCTTGCCGAGTCGGGTTTTC AGACGCTATCTTCGGCAGCTTTTTAAAACGCATCTTAAAGCTGTTCTCGACTCTCCTCACCTTGACGCCTCTCTG GGGGCTCCTCTCAGCGTCTACAACCAAATCACCCTATCACCCTCTTCGACGCCGCTTCCGCCTTGGAACGAGTCG TATTCTCACTCAAATAAGCATCCTATGATGTCGGCGCCGGCGGACATGGGCTCTTTCGAGACAGTTATTCTCAAT GGTCCTGGTGATTGGAGAAGATGGATGGCCCAGATCCAAAGACTTGCATCGGAAAACGGCATCTGGCCTCTAGTT GATCCTTCTGCTGCGGACAAGCCAGTCCTCACAAGACCTTGCGAACCCAAAGCCTCCCAAGTGAACCCAGAAGCT GAAGGACCAGAAGATCTAAATGGCTATGAGATTCACAAGCTCGAATTTCTCTACTCGGCATACCGCGTCCAAAGG ATGGATTTCGAGAAGAAAGAGAGGGCCCTGTCAGCCCTCAATCTTGTCGTCGTCAAGACCGTCGGCCGATACTAC AACTTAGTCGCTGGCCAACAAGATGTCGTTGCCTCTCTGGCGCTCCTCAAGGATAGGGTACAGCCATCAGACTGG GCCATAAGGATGGAAGCTCGAAACCGTTACCGGGCCCTTCTCAGATGTCCCGATATGTCCAAGATCGAGGACTGG GTCGACTCTTGGCAGTTGGCCCTCGACGAGGCTACGGCATTGGATCTGCCGGATGTCCAGGGACTTCTACCTACT CAGGACTTTCTGCAGGCCGTATCGTCGATTGATCCGTGTTTCGCAACCTTTTGGATGCAAACGATCGAGCACCGA GCCTTGGAGAACAATGAAAATTGGGAAAGCTCTATTCCTTGCGGGATCAAAATTAGCGAAATTTTCAGCAGGACT GCCAGGGTTAATGCTGCTGCTAAGACGCCTTCAACAGACTTGAGACTCGAAGCCTACCCTAAATGCGATGCTCAC AAGTTGCAGACACACTTCGGAACGCTTCCGCTGCACCCCAGCACGAGCAGTTTCCTAACAGGGGGGGAGGATCCC CAGCTGCAGATTGGGAGACATGCCAGCTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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