© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|5045 |
| Gene name | |
| Location | scaffold_404:4526..5480 |
| Strand | + |
| Gene length (bp) | 954 |
| Transcript length (bp) | 900 |
| Coding sequence length (bp) | 897 |
| Protein length (aa) | 299 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02544 | Steroid_dh | 3-oxo-5-alpha-steroid 4-dehydrogenase | 1.6E-11 | 165 | 299 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P40526|DFG10_YEAST | Polyprenol reductase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DFG10 PE=1 SV=1 | 18 | 298 | 2.0E-18 |
| sp|Q7F0Q2|POED2_ORYSJ | Polyprenol reductase 2 OS=Oryza sativa subsp. japonica GN=Os07g0493400 PE=2 SV=1 | 69 | 298 | 1.0E-11 |
| sp|B8B6G5|POED2_ORYSI | Polyprenol reductase 2 OS=Oryza sativa subsp. indica GN=OsI_26070 PE=3 SV=2 | 69 | 298 | 2.0E-11 |
| sp|Q7XUH5|POED1_ORYSJ | Polyprenol reductase 1 OS=Oryza sativa subsp. japonica GN=Os04g0576800 PE=2 SV=2 | 69 | 298 | 2.0E-11 |
| sp|A2XWN6|POED1_ORYSI | Polyprenol reductase 1 OS=Oryza sativa subsp. indica GN=OsI_17065 PE=3 SV=1 | 69 | 298 | 2.0E-11 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P40526|DFG10_YEAST | Polyprenol reductase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DFG10 PE=1 SV=1 | 18 | 298 | 2.0E-18 |
| sp|Q7F0Q2|POED2_ORYSJ | Polyprenol reductase 2 OS=Oryza sativa subsp. japonica GN=Os07g0493400 PE=2 SV=1 | 69 | 298 | 1.0E-11 |
| sp|B8B6G5|POED2_ORYSI | Polyprenol reductase 2 OS=Oryza sativa subsp. indica GN=OsI_26070 PE=3 SV=2 | 69 | 298 | 2.0E-11 |
| sp|Q7XUH5|POED1_ORYSJ | Polyprenol reductase 1 OS=Oryza sativa subsp. japonica GN=Os04g0576800 PE=2 SV=2 | 69 | 298 | 2.0E-11 |
| sp|A2XWN6|POED1_ORYSI | Polyprenol reductase 1 OS=Oryza sativa subsp. indica GN=OsI_17065 PE=3 SV=1 | 69 | 298 | 2.0E-11 |
| sp|Q8AVI9|PORED_XENLA | Polyprenol reductase OS=Xenopus laevis GN=srd5a3 PE=2 SV=1 | 39 | 299 | 6.0E-11 |
| sp|Q0P4J9|PORED_XENTR | Polyprenol reductase OS=Xenopus tropicalis GN=srd5a3 PE=2 SV=1 | 69 | 299 | 1.0E-10 |
| sp|D2HBV9|PORED_AILME | Polyprenol reductase OS=Ailuropoda melanoleuca GN=SRD5A3 PE=3 SV=1 | 39 | 283 | 2.0E-10 |
| sp|Q9H8P0|PORED_HUMAN | Polyprenol reductase OS=Homo sapiens GN=SRD5A3 PE=1 SV=1 | 39 | 283 | 7.0E-10 |
| sp|Q5RJM1|PORED_RAT | Polyprenol reductase OS=Rattus norvegicus GN=Srd5a3 PE=1 SV=2 | 39 | 283 | 4.0E-09 |
| sp|C7T2J9|PORED_MESAU | Polyprenol reductase OS=Mesocricetus auratus GN=Srd5a3 PE=2 SV=1 | 39 | 243 | 6.0E-09 |
| sp|O14264|YFP9_SCHPO | Uncharacterized protein C7D4.09c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC7D4.09c PE=3 SV=3 | 68 | 299 | 1.0E-08 |
| sp|Q9WUP4|PORED_MOUSE | Polyprenol reductase OS=Mus musculus GN=Srd5a3 PE=1 SV=2 | 39 | 283 | 1.0E-07 |
| sp|Q5RIU9|PORED_DANRE | Polyprenol reductase OS=Danio rerio GN=srd5a3 PE=2 SV=1 | 35 | 298 | 2.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006629 | lipid metabolic process | Yes |
| GO:0016627 | oxidoreductase activity, acting on the CH-CH group of donors | Yes |
| GO:0071704 | organic substance metabolic process | No |
| GO:0016491 | oxidoreductase activity | No |
| GO:0044238 | primary metabolic process | No |
| GO:0003824 | catalytic activity | No |
| GO:0003674 | molecular_function | No |
| GO:0008152 | metabolic process | No |
| GO:0008150 | biological_process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 16 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 15 | 34 | 19 |
| 2 | 72 | 94 | 22 |
| 3 | 145 | 167 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|5045 MATHIAIEAIKPSQWFQTFFLATAVAIVAVHLLPRHFQQRLLQYGARGSDPVRRHGGTSLTSLLLDAHVPHAWFW HFYLVSVCWSAVWAWQYLTRGALMGALARAQNAPSTELGRVYLAWAMLAAQGCRRLFECFFVLRPGSSPMAWTHW LLGLVYYTLVNLIVWIHNSGAILASWTSPEPVVLLTPRGLLALPVFLAASLGQNHCHHHLANLPKYTLPCEGLFR RLICPHYTCECVIYLAIAFVSAPPGSLFNPSLLCVLAMVLANLGATARDTERWYEQKFGRDKVAGRWKMIPFIY |
| Coding | >Ophio5|5045 ATGGCCACGCACATCGCCATCGAAGCCATCAAGCCCTCGCAGTGGTTTCAGACTTTCTTCCTCGCCACGGCAGTT GCCATCGTCGCCGTCCACCTCCTCCCGCGACACTTCCAGCAGAGATTGCTTCAATATGGCGCTCGCGGTTCCGAC CCTGTCCGTCGCCATGGCGGCACATCCTTGACGTCGCTGCTCCTCGACGCCCATGTGCCACATGCCTGGTTTTGG CACTTCTACTTGGTTTCCGTCTGCTGGTCGGCCGTTTGGGCCTGGCAGTATCTCACTCGCGGTGCCTTGATGGGC GCCCTGGCTCGCGCTCAGAACGCTCCCTCGACCGAGCTGGGCCGTGTCTACCTCGCCTGGGCTATGCTCGCTGCC CAAGGCTGTAGGCGGCTTTTCGAATGTTTCTTCGTCCTGCGGCCGGGGAGCTCGCCCATGGCATGGACCCATTGG CTTTTGGGCCTCGTCTATTACACTCTCGTCAACTTGATCGTTTGGATACACAACTCTGGTGCCATCCTGGCGTCG TGGACGTCGCCAGAACCTGTCGTCCTACTGACGCCGCGTGGGCTGCTGGCCCTGCCGGTCTTCCTGGCCGCATCC CTGGGGCAAAACCATTGTCACCATCATCTCGCCAACCTTCCCAAGTACACACTTCCCTGCGAGGGCTTGTTTCGT CGTCTCATCTGCCCTCATTATACCTGCGAGTGCGTCATTTATCTTGCCATCGCCTTCGTCTCGGCGCCGCCCGGC AGCCTCTTCAATCCGTCCTTGCTCTGCGTCCTCGCCATGGTTTTAGCCAATCTCGGCGCCACCGCCCGCGATACC GAGCGGTGGTACGAGCAAAAGTTCGGACGGGACAAAGTCGCTGGTCGATGGAAGATGATTCCCTTCATATAC |
| Transcript | >Ophio5|5045 ATGGCCACGCACATCGCCATCGAAGCCATCAAGCCCTCGCAGTGGTTTCAGACTTTCTTCCTCGCCACGGCAGTT GCCATCGTCGCCGTCCACCTCCTCCCGCGACACTTCCAGCAGAGATTGCTTCAATATGGCGCTCGCGGTTCCGAC CCTGTCCGTCGCCATGGCGGCACATCCTTGACGTCGCTGCTCCTCGACGCCCATGTGCCACATGCCTGGTTTTGG CACTTCTACTTGGTTTCCGTCTGCTGGTCGGCCGTTTGGGCCTGGCAGTATCTCACTCGCGGTGCCTTGATGGGC GCCCTGGCTCGCGCTCAGAACGCTCCCTCGACCGAGCTGGGCCGTGTCTACCTCGCCTGGGCTATGCTCGCTGCC CAAGGCTGTAGGCGGCTTTTCGAATGTTTCTTCGTCCTGCGGCCGGGGAGCTCGCCCATGGCATGGACCCATTGG CTTTTGGGCCTCGTCTATTACACTCTCGTCAACTTGATCGTTTGGATACACAACTCTGGTGCCATCCTGGCGTCG TGGACGTCGCCAGAACCTGTCGTCCTACTGACGCCGCGTGGGCTGCTGGCCCTGCCGGTCTTCCTGGCCGCATCC CTGGGGCAAAACCATTGTCACCATCATCTCGCCAACCTTCCCAAGTACACACTTCCCTGCGAGGGCTTGTTTCGT CGTCTCATCTGCCCTCATTATACCTGCGAGTGCGTCATTTATCTTGCCATCGCCTTCGTCTCGGCGCCGCCCGGC AGCCTCTTCAATCCGTCCTTGCTCTGCGTCCTCGCCATGGTTTTAGCCAATCTCGGCGCCACCGCCCGCGATACC GAGCGGTGGTACGAGCAAAAGTTCGGACGGGACAAAGTCGCTGGTCGATGGAAGATGATTCCCTTCATATACTAG |
| Gene | >Ophio5|5045 ATGGCCACGCACATCGCCATCGAAGCCATCAAGCCCTCGCAGTGGTTTCAGACTTTCTTCCTCGCCACGGCAGTT GCCATCGTCGCCGTCCACCTCCTCCCGCGACACTTCCAGCAGAGATTGCTTCAATATGGCGCTCGCGGTTCCGAC CCTGTCCGTCGCCATGGCGGCACATCCTTGACGTCGCTGCTCCTCGACGCCCATGTGCCACATGCCTGGTTTTGG CACTTCTACTTGGTTTCCGTCTGCTGGTCGGCCGTTTGGGCCTGGCAGTATCTCACTCGCGGTGCCTTGATGGGC GCCCTGGCTCGCGCTCAGAACGCTCCCTCGACCGAGCTGGGCCGTGTCTACCTCGCCTGGGCTATGCTCGCTGCC CAAGGCTGTAGGCGGCTTTTCGAATGTTTCTTCGTCCTGCGGCCGGGGAGCTCGCCCATGGCATGGACCCATTGG CTTTTGGGCCTCGTCTATTACACTCTCGTCAACTTGATCGTTTGGATACACAACTCTGGTGCGTTCGGCGCCTTT CCTGTCCCTGCCCTTTTAGGCTGACTCTCGTCCTCAGGTGCCATCCTGGCGTCGTGGACGTCGCCAGAACCTGTC GTCCTACTGACGCCGCGTGGGCTGCTGGCCCTGCCGGTCTTCCTGGCCGCATCCCTGGGGCAAAACCATTGTCAC CATCATCTCGCCAACCTTCCCAAGTACACACTTCCCTGCGAGGGCTTGTTTCGTCGTCTCATCTGCCCTCATTAT ACCTGCGAGTGCGTCATTTATCTTGCCATCGCCTTCGTCTCGGCGCCGCCCGGCAGCCTCTTCAATCCGTCCTTG CTCTGCGTCCTCGCCATGGTTTTAGCCAATCTCGGCGCCACCGCCCGCGATACCGAGCGGTGGTACGAGCAAAAG TTCGGACGGGACAAAGTCGCTGGTCGATGGAAGATGATTCCCTTCATATACTAG |