Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|5031
Gene name
Locationscaffold_402:11494..12625
Strand+
Gene length (bp)1131
Transcript length (bp)1131
Coding sequence length (bp)1128
Protein length (aa) 376

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF20263 LYRM2-like LYR motif-containing protein 2-like 2.0E-09 17 97
PF05347 Complex1_LYR Complex 1 protein (LYR family) 2.1E-07 14 57

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 12 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|5031
MPAPWFPVPSPLPPLCLYRHILREASYLPPAFRVKVVDTIRHRFHNNRLDTSLAKTRISRARTVLRTLRAANSGE
TDAMTKLIYLGFGRAGSFRRELISEFVKPQGPSDSKALDALLDKAAEPDSKAQGADKSETQKADQGDVPEAVDKK
RKPKIDFFLRWDRPKLLQLNKSQRQQQTVAKSATGWPRAALKNFNQNQFVPATNIWGKPPSESLVRTKRAKWWKI
MVDKLLPPLSKGQWELLGQLSEGAQDSGNWAIPKRRPAAQAQSIAPHQWDWRAYASTTVNIIEKPKSLYNQRRSG
QRDMGPYSVRQRKDKISLRWFRRQYKRTWLVTPTMSQNANTLRHSISWGQAASGVSPATRAQLEIFQGVNAHGRR
S
Coding >Ophio5|5031
ATGCCTGCGCCGTGGTTCCCAGTGCCTTCGCCCTTGCCGCCCCTTTGCCTCTATCGTCACATACTGCGCGAGGCG
TCCTACCTGCCACCGGCCTTCCGTGTCAAAGTCGTCGACACGATTCGTCACCGGTTCCATAATAACCGTTTGGAT
ACCTCTCTCGCAAAGACCCGCATATCCCGCGCTCGAACCGTCCTGCGGACGCTCAGGGCCGCCAACAGCGGCGAA
ACAGATGCCATGACGAAGCTCATCTACCTGGGCTTTGGCAGGGCCGGCAGCTTTAGACGAGAGCTCATATCTGAG
TTCGTCAAGCCTCAAGGGCCCAGTGACTCGAAGGCCCTCGACGCACTGCTCGACAAAGCCGCCGAGCCCGACAGC
AAAGCCCAAGGGGCAGACAAGAGCGAGACGCAAAAGGCAGACCAGGGTGACGTTCCAGAAGCTGTCGACAAGAAG
AGGAAGCCGAAAATTGACTTCTTCCTGAGGTGGGATCGGCCCAAGCTGTTACAGCTCAACAAGTCCCAACGGCAG
CAGCAAACCGTTGCCAAATCGGCGACCGGCTGGCCCAGGGCCGCTCTCAAAAACTTCAATCAGAACCAATTTGTT
CCGGCCACTAACATTTGGGGCAAGCCACCGTCCGAATCCCTGGTCCGAACGAAGCGGGCCAAGTGGTGGAAAATA
ATGGTCGATAAACTCTTGCCGCCCCTGAGCAAGGGTCAGTGGGAGCTGCTGGGGCAGCTGTCTGAGGGCGCCCAG
GACAGCGGGAATTGGGCAATCCCCAAGAGGCGACCGGCCGCCCAGGCCCAATCGATTGCACCGCACCAGTGGGAC
TGGCGGGCCTATGCCTCGACGACCGTAAACATCATCGAAAAGCCCAAGTCTTTGTACAACCAACGACGTTCTGGA
CAAAGAGACATGGGGCCCTACAGTGTGCGCCAACGCAAGGACAAGATCTCGTTGAGGTGGTTCCGCAGGCAATAC
AAACGCACCTGGCTGGTGACGCCCACCATGAGCCAGAACGCAAACACGCTCCGGCACTCGATCAGCTGGGGTCAG
GCCGCGTCCGGGGTATCACCGGCGACGAGGGCACAGCTCGAGATTTTCCAGGGCGTGAATGCACATGGCCGACGT
TCT
Transcript >Ophio5|5031
ATGCCTGCGCCGTGGTTCCCAGTGCCTTCGCCCTTGCCGCCCCTTTGCCTCTATCGTCACATACTGCGCGAGGCG
TCCTACCTGCCACCGGCCTTCCGTGTCAAAGTCGTCGACACGATTCGTCACCGGTTCCATAATAACCGTTTGGAT
ACCTCTCTCGCAAAGACCCGCATATCCCGCGCTCGAACCGTCCTGCGGACGCTCAGGGCCGCCAACAGCGGCGAA
ACAGATGCCATGACGAAGCTCATCTACCTGGGCTTTGGCAGGGCCGGCAGCTTTAGACGAGAGCTCATATCTGAG
TTCGTCAAGCCTCAAGGGCCCAGTGACTCGAAGGCCCTCGACGCACTGCTCGACAAAGCCGCCGAGCCCGACAGC
AAAGCCCAAGGGGCAGACAAGAGCGAGACGCAAAAGGCAGACCAGGGTGACGTTCCAGAAGCTGTCGACAAGAAG
AGGAAGCCGAAAATTGACTTCTTCCTGAGGTGGGATCGGCCCAAGCTGTTACAGCTCAACAAGTCCCAACGGCAG
CAGCAAACCGTTGCCAAATCGGCGACCGGCTGGCCCAGGGCCGCTCTCAAAAACTTCAATCAGAACCAATTTGTT
CCGGCCACTAACATTTGGGGCAAGCCACCGTCCGAATCCCTGGTCCGAACGAAGCGGGCCAAGTGGTGGAAAATA
ATGGTCGATAAACTCTTGCCGCCCCTGAGCAAGGGTCAGTGGGAGCTGCTGGGGCAGCTGTCTGAGGGCGCCCAG
GACAGCGGGAATTGGGCAATCCCCAAGAGGCGACCGGCCGCCCAGGCCCAATCGATTGCACCGCACCAGTGGGAC
TGGCGGGCCTATGCCTCGACGACCGTAAACATCATCGAAAAGCCCAAGTCTTTGTACAACCAACGACGTTCTGGA
CAAAGAGACATGGGGCCCTACAGTGTGCGCCAACGCAAGGACAAGATCTCGTTGAGGTGGTTCCGCAGGCAATAC
AAACGCACCTGGCTGGTGACGCCCACCATGAGCCAGAACGCAAACACGCTCCGGCACTCGATCAGCTGGGGTCAG
GCCGCGTCCGGGGTATCACCGGCGACGAGGGCACAGCTCGAGATTTTCCAGGGCGTGAATGCACATGGCCGACGT
TCTTGA
Gene >Ophio5|5031
ATGCCTGCGCCGTGGTTCCCAGTGCCTTCGCCCTTGCCGCCCCTTTGCCTCTATCGTCACATACTGCGCGAGGCG
TCCTACCTGCCACCGGCCTTCCGTGTCAAAGTCGTCGACACGATTCGTCACCGGTTCCATAATAACCGTTTGGAT
ACCTCTCTCGCAAAGACCCGCATATCCCGCGCTCGAACCGTCCTGCGGACGCTCAGGGCCGCCAACAGCGGCGAA
ACAGATGCCATGACGAAGCTCATCTACCTGGGCTTTGGCAGGGCCGGCAGCTTTAGACGAGAGCTCATATCTGAG
TTCGTCAAGCCTCAAGGGCCCAGTGACTCGAAGGCCCTCGACGCACTGCTCGACAAAGCCGCCGAGCCCGACAGC
AAAGCCCAAGGGGCAGACAAGAGCGAGACGCAAAAGGCAGACCAGGGTGACGTTCCAGAAGCTGTCGACAAGAAG
AGGAAGCCGAAAATTGACTTCTTCCTGAGGTGGGATCGGCCCAAGCTGTTACAGCTCAACAAGTCCCAACGGCAG
CAGCAAACCGTTGCCAAATCGGCGACCGGCTGGCCCAGGGCCGCTCTCAAAAACTTCAATCAGAACCAATTTGTT
CCGGCCACTAACATTTGGGGCAAGCCACCGTCCGAATCCCTGGTCCGAACGAAGCGGGCCAAGTGGTGGAAAATA
ATGGTCGATAAACTCTTGCCGCCCCTGAGCAAGGGTCAGTGGGAGCTGCTGGGGCAGCTGTCTGAGGGCGCCCAG
GACAGCGGGAATTGGGCAATCCCCAAGAGGCGACCGGCCGCCCAGGCCCAATCGATTGCACCGCACCAGTGGGAC
TGGCGGGCCTATGCCTCGACGACCGTAAACATCATCGAAAAGCCCAAGTCTTTGTACAACCAACGACGTTCTGGA
CAAAGAGACATGGGGCCCTACAGTGTGCGCCAACGCAAGGACAAGATCTCGTTGAGGTGGTTCCGCAGGCAATAC
AAACGCACCTGGCTGGTGACGCCCACCATGAGCCAGAACGCAAACACGCTCCGGCACTCGATCAGCTGGGGTCAG
GCCGCGTCCGGGGTATCACCGGCGACGAGGGCACAGCTCGAGATTTTCCAGGGCGTGAATGCACATGGCCGACGT
TCTTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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