© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ophio5|5009 |
| Gene name | |
| Location | scaffold_40:56323..56894 |
| Strand | + |
| Gene length (bp) | 571 |
| Transcript length (bp) | 387 |
| Coding sequence length (bp) | 384 |
| Protein length (aa) | 128 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01035 | DNA_binding_1 | 6-O-methylguanine DNA methyltransferase, DNA binding domain | 2.2E-25 | 9 | 98 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9UTN9|ATL1_SCHPO | Alkyltransferase-like protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=atl1 PE=1 SV=1 | 3 | 119 | 5.0E-24 |
| sp|P0AFP3|ATL_SHIFL | DNA base-flipping protein OS=Shigella flexneri GN=atl PE=3 SV=1 | 3 | 117 | 5.0E-14 |
| sp|P0AFP2|ATL_ECOLI | DNA base-flipping protein OS=Escherichia coli (strain K12) GN=atl PE=1 SV=1 | 3 | 117 | 5.0E-14 |
| sp|A6B4U8|ATL_VIBPQ | DNA base-flipping protein OS=Vibrio parahaemolyticus serotype O3:K6 (strain AQ3810) GN=A79_1377 PE=1 SV=1 | 8 | 119 | 4.0E-12 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003824 | catalytic activity | Yes |
| GO:0006281 | DNA repair | Yes |
| GO:0003674 | molecular_function | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0050896 | response to stimulus | No |
| GO:0006259 | DNA metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0033554 | cellular response to stress | No |
| GO:0044260 | cellular macromolecule metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:0051716 | cellular response to stimulus | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0006974 | cellular response to DNA damage stimulus | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0006950 | response to stress | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 12.02 | 1.83 | 22.21 |
| CcL | In ants, during behavior modification | 15.03 | 0.00 | 31.62 |
| CcD | In ants, recently dead | 4.78 | 0.00 | 9.91 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.682290 | no |
| SC16a | CcD | 0.073027 | no |
| CcL | CcD | 0.042958 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|5009 MPRSDEAEAFFHAVCSAVQEIPPGKVTSYGHVALLVGTPQRPRQVGLCMKHLPATPDARFHSGNVPWQRVINAKG LISPRSNPSGARSQAAALRAEGVDVSTGALGELTVDLARYGWFPPELPSEAQE |
| Coding | >Ophio5|5009 ATGCCTCGCTCCGACGAGGCCGAGGCCTTTTTCCACGCCGTCTGCTCCGCCGTACAGGAGATTCCTCCGGGAAAG GTCACGTCCTACGGCCACGTCGCATTGCTCGTTGGCACCCCCCAGCGCCCCCGCCAAGTCGGCCTCTGCATGAAG CACCTTCCTGCCACCCCCGACGCTCGCTTCCACTCTGGCAACGTCCCCTGGCAGCGCGTCATCAATGCCAAAGGC CTCATCTCTCCACGCTCCAACCCGTCTGGCGCCCGCTCTCAGGCTGCCGCCCTCCGCGCCGAGGGCGTCGACGTC TCCACCGGCGCCCTAGGCGAGCTGACCGTCGATCTCGCCCGCTACGGCTGGTTCCCACCTGAGCTGCCGTCTGAG GCGCAAGAG |
| Transcript | >Ophio5|5009 ATGCCTCGCTCCGACGAGGCCGAGGCCTTTTTCCACGCCGTCTGCTCCGCCGTACAGGAGATTCCTCCGGGAAAG GTCACGTCCTACGGCCACGTCGCATTGCTCGTTGGCACCCCCCAGCGCCCCCGCCAAGTCGGCCTCTGCATGAAG CACCTTCCTGCCACCCCCGACGCTCGCTTCCACTCTGGCAACGTCCCCTGGCAGCGCGTCATCAATGCCAAAGGC CTCATCTCTCCACGCTCCAACCCGTCTGGCGCCCGCTCTCAGGCTGCCGCCCTCCGCGCCGAGGGCGTCGACGTC TCCACCGGCGCCCTAGGCGAGCTGACCGTCGATCTCGCCCGCTACGGCTGGTTCCCACCTGAGCTGCCGTCTGAG GCGCAAGAGTGA |
| Gene | >Ophio5|5009 ATGCCTCGCTCCGACGAGGCCGAGGCCTTTTTCCACGCCGTCTGCTCCGCCGTACAGGAGATTCCTCCGGGAAAG GTCACGTCCTACGGCCACGTCGCATTGCTCGTTGGCACCCGTACGTAGCCGGTCTCCCCATATACAGAAATATAT ATCTATATCTATATCTCTATATATCTATATATCTATACATCTCCCCTCATCACTCGTCAGTCTGACATCAATCAA TCAATCAATGACCTTTGCAGCCCAGCGCCCCCGCCAAGTCGGCCTCTGCATGAAGCACCTTCCTGCCACCCCCGA CGCTCGCTTCCACTCTGGCAACGTCCCCTGGCAGCGCGTCATCAATGCCAAAGGCCTCATCTCTCCACGGTGAGT TCTCCTCTCAGTCACGGCCTTCGTCTCGCCAATCCTCACCTCACCCAGCTCCAACCCGTCTGGCGCCCGCTCTCA GGCTGCCGCCCTCCGCGCCGAGGGCGTCGACGTCTCCACCGGCGCCCTAGGCGAGCTGACCGTCGATCTCGCCCG CTACGGCTGGTTCCCACCTGAGCTGCCGTCTGAGGCGCAAGAGTGA |