Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|4997
Gene name
Locationscaffold_40:20415..21353
Strand-
Gene length (bp)938
Transcript length (bp)714
Coding sequence length (bp)711
Protein length (aa) 237

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF06726 BC10 Bladder cancer-related protein BC10 6.8E-17 97 151

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 11 0.45

Transmembrane Domains

Domain # Start End Length
1 106 128 22
2 133 155 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|4997
MTSEPAAFFRPPPFLRGATRQKEGRSESAVSDSINSRFLPSRCNRRPISQSLRIGAVARDPPWRITLWTKDPSGS
GADAPGSARGGNGQPRLSETAMFCLRSWLPLLFIPTNASPAFIFLFFVCTYFLNRPCVYCSILLLILFLTSCNWS
DHCFFDFRSNWFLPRPNVTTGLDDDGSVFNATVVEMLTSTAKAIASAAADDIASRRAEWTGLGMEWLRSLLGRRE
WRVDCMDIYIRL
Coding >Ophio5|4997
ATGACGTCGGAGCCGGCAGCATTTTTCCGACCTCCTCCTTTCCTCAGGGGAGCGACGCGACAGAAAGAAGGCCGC
AGCGAATCCGCCGTCTCCGACAGCATCAACAGCCGATTTCTTCCTTCTCGCTGCAATCGACGTCCGATTTCACAG
TCTCTTCGCATCGGCGCCGTTGCGAGGGACCCCCCTTGGAGGATTACGCTGTGGACGAAGGACCCGTCAGGGAGC
GGAGCAGACGCGCCTGGAAGCGCTCGCGGCGGCAACGGGCAGCCACGGCTCTCGGAGACGGCCATGTTCTGCCTG
CGCAGCTGGCTGCCGCTACTCTTCATCCCGACCAACGCGTCGCCGGCCTTCATCTTCCTCTTCTTCGTCTGCACC
TACTTCCTCAACCGGCCTTGCGTCTACTGCTCGATCCTACTCCTGATACTCTTCCTCACGTCGTGCAACTGGTCG
GATCACTGTTTCTTCGACTTCCGAAGCAACTGGTTCTTACCGCGGCCCAATGTCACGACCGGACTGGACGACGAT
GGCTCCGTCTTCAACGCCACCGTCGTTGAGATGCTCACTTCGACGGCCAAGGCTATCGCTAGCGCCGCCGCCGAT
GACATCGCCTCCCGCAGGGCAGAGTGGACCGGCCTGGGCATGGAGTGGCTGAGGAGCCTACTGGGAAGACGCGAG
TGGCGGGTGGATTGTATGGACATTTATATCCGCCTG
Transcript >Ophio5|4997
ATGACGTCGGAGCCGGCAGCATTTTTCCGACCTCCTCCTTTCCTCAGGGGAGCGACGCGACAGAAAGAAGGCCGC
AGCGAATCCGCCGTCTCCGACAGCATCAACAGCCGATTTCTTCCTTCTCGCTGCAATCGACGTCCGATTTCACAG
TCTCTTCGCATCGGCGCCGTTGCGAGGGACCCCCCTTGGAGGATTACGCTGTGGACGAAGGACCCGTCAGGGAGC
GGAGCAGACGCGCCTGGAAGCGCTCGCGGCGGCAACGGGCAGCCACGGCTCTCGGAGACGGCCATGTTCTGCCTG
CGCAGCTGGCTGCCGCTACTCTTCATCCCGACCAACGCGTCGCCGGCCTTCATCTTCCTCTTCTTCGTCTGCACC
TACTTCCTCAACCGGCCTTGCGTCTACTGCTCGATCCTACTCCTGATACTCTTCCTCACGTCGTGCAACTGGTCG
GATCACTGTTTCTTCGACTTCCGAAGCAACTGGTTCTTACCGCGGCCCAATGTCACGACCGGACTGGACGACGAT
GGCTCCGTCTTCAACGCCACCGTCGTTGAGATGCTCACTTCGACGGCCAAGGCTATCGCTAGCGCCGCCGCCGAT
GACATCGCCTCCCGCAGGGCAGAGTGGACCGGCCTGGGCATGGAGTGGCTGAGGAGCCTACTGGGAAGACGCGAG
TGGCGGGTGGATTGTATGGACATTTATATCCGCCTGTGA
Gene >Ophio5|4997
ATGACGTCGGAGCCGGCAGCATTTTTCCGACCTCCTCCTTTCCTCAGGGGAGCGACGCGACAGAAAGAAGGCCGC
AGCGAATCCGCCGTCTCCGACAGCATCAACAGCCGATTTCTTCCTTCTCGCTGCAATCGACGTCCGATTTCACGT
GACTTGAGATATATACGCCACCATCGCAAGGATCTGGCCGTCAGGGTGTGAGCCTCGTGGATACTTTTAGCTGGG
CTGGAGCCGGGGAGAGTCTCTTCGCATCGGCGCCGTTGCGGTGAGGAACCCCCCCCCCCCCCCCTTGGAGCTCGG
ACTCGACTCGAGGATATTGGAGTTGCAACTTCTGTCAAGAGGGACCCCCCTTGGAGGATTACGCTGTGGACGAAG
GACCCGTCAGGGAGCGGAGCAGACGCGCCTGGAAGCGCTCGCGGCGGCAACGGGCAGCCACGGCTCTCGGAGACG
GCCATGTTCTGCCTGCGCAGGTAAGCAGACGGTATCGCCACCCCCCCCAAGGACAGACTCGTGGTCTGACGCTTG
GTAGCTGGCTGCCGCTACTCTTCATCCCGACCAACGCGTCGCCGGCCTTCATCTTCCTCTTCTTCGTCTGCACCT
ACTTCCTCAACCGGCCTTGCGTCTACTGCTCGATCCTACTCCTGATACTCTTCCTCACGTCGTGCAACTGGTCGG
ATCACTGTTTCTTCGACTTCCGAAGCAACTGGTTCTTACCGCGGCCCAATGTCACGACCGGACTGGACGACGATG
GCTCCGTCTTCAACGCCACCGTCGTTGAGATGCTCACTTCGACGGCCAAGGCTATCGCTAGCGCCGCCGCCGATG
ACATCGCCTCCCGCAGGGCAGAGTGGACCGGCCTGGGCATGGAGTGGCTGAGGAGCCTACTGGGAAGACGCGAGT
GGCGGGTGGATTGTATGGACATTTATATCCGCCTGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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