Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|4992
Gene name
Locationscaffold_40:10281..10812
Strand-
Gene length (bp)531
Transcript length (bp)216
Coding sequence length (bp)213
Protein length (aa) 71

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PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 40 0.45

Transmembrane Domains

Domain # Start End Length
1 21 40 19

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 336.94 143.35 530.52
CcL In ants, during behavior modification 8.03 3.16 12.89
CcD In ants, recently dead 0.00 0.00 0.00

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 0.010451 yes
SC16a CcD 0.000286 yes
CcL CcD 0.003935 yes

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|4992
MLEDRRHFLDYKKVPSDHQDWIIVSFINLIPILYHPATALEASIPYQSTLHHIFVKTLHHHFQVKMRPTLS
Coding >Ophio5|4992
ATGCTGGAAGACAGGAGACACTTTTTGGACTACAAAAAGGTGCCCTCTGACCATCAAGATTGGATCATCGTCAGC
TTCATCAACCTCATTCCCATCCTTTACCATCCGGCTACAGCTCTGGAAGCCTCCATACCTTACCAATCTACTCTA
CACCACATCTTTGTTAAGACACTTCACCACCACTTTCAAGTGAAGATGCGCCCTACGCTATCA
Transcript >Ophio5|4992
ATGCTGGAAGACAGGAGACACTTTTTGGACTACAAAAAGGTGCCCTCTGACCATCAAGATTGGATCATCGTCAGC
TTCATCAACCTCATTCCCATCCTTTACCATCCGGCTACAGCTCTGGAAGCCTCCATACCTTACCAATCTACTCTA
CACCACATCTTTGTTAAGACACTTCACCACCACTTTCAAGTGAAGATGCGCCCTACGCTATCATGA
Gene >Ophio5|4992
ATGCTGGAAGACAGGTATAGGACTTGCCCTGTCTGAGAGACAGGTTTCGACGCAGACAAAACCCTGTAGTATCTA
CCGAGCCATGGCCTAGGCATTCTTGCCGTCTTGATTCAAGCGGAAGAACAAGGCTTGCATTCAGCCTTACTGACG
TGTATCTGTTCAAGGAGCATGGTATTCAACGGCAGTCGCCCAAGTCGTGGTGAGATCACAAGGCAGACTTTACGC
ATGTTCTGACTTGGGTGTCAATGATATGCTTCGTGCAGGAGACACTTTTTGGACTACAAAAAGGTGCCCTCTGAC
CATCAAGATTGGATCATCGTCAGCTTCATCAACCTCATTCCCATCCTTTACCATCCGGCTACAGCTCTGGAAGCC
TCCATACCTTACCAATCTACTCTACACCACATCTTTGTTAAGACACTTCACCACCACTTTCAAGGTATGTTCTTG
CGCCTTCTTTTCAAGCCGCCACTGTTATCGTATCATTGGCTGACGAGCTGATTAGTGAAGATGCGCCCTACGCTA
TCATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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