© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|4958 |
| Gene name | |
| Location | scaffold_4:36053..36994 |
| Strand | - |
| Gene length (bp) | 941 |
| Transcript length (bp) | 810 |
| Coding sequence length (bp) | 807 |
| Protein length (aa) | 269 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04117 | Mpv17_PMP22 | Mpv17 / PMP22 family | 6.6E-10 | 171 | 226 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9ZS51|PMP22_ARATH | Peroxisomal membrane protein PMP22 OS=Arabidopsis thaliana GN=PMP22 PE=1 SV=1 | 58 | 241 | 1.0E-12 |
| sp|Q54GD8|PX24C_DICDI | PXMP2/4 family protein 3 OS=Dictyostelium discoideum GN=DDB_G0290223 PE=3 SV=1 | 54 | 234 | 1.0E-10 |
| sp|Q2KIY1|PXMP2_BOVIN | Peroxisomal membrane protein 2 OS=Bos taurus GN=PXMP2 PE=2 SV=3 | 58 | 231 | 4.0E-10 |
| sp|Q54FR4|PX24D_DICDI | PXMP2/4 family protein 4 OS=Dictyostelium discoideum GN=DDB_G0290631 PE=3 SV=1 | 61 | 230 | 1.0E-07 |
| sp|Q07066|PXMP2_RAT | Peroxisomal membrane protein 2 OS=Rattus norvegicus GN=Pxmp2 PE=1 SV=2 | 58 | 231 | 9.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005575 | cellular_component | No |
| GO:0031224 | intrinsic component of membrane | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Peroxisome | Transmembrane domain | 0.0404 | 0.0964 | 0.0168 | 0.1027 | 0.6165 | 0.1465 | 0.5334 | 0.1737 | 0.064 | 0.7832 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 110 | 132 | 22 |
| 2 | 145 | 167 | 22 |
| 3 | 210 | 229 | 19 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 209.86 | 113.75 | 305.97 |
| CcL | In ants, during behavior modification | 347.79 | 175.39 | 520.19 |
| CcD | In ants, recently dead | 332.43 | 172.55 | 492.31 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.029109 | yes |
| SC16a | CcD | 0.042405 | yes |
| CcL | CcD | 0.882534 | no |
| Orthofinder run ID | 4 |
| Orthogroup | 5168 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|4958 MSVKFERETVKQTAQSVLSSAVPEHGSIPGTSGRHPIAERVGTALTGGMKNAGTEGYLAAYIKQLESNPLRTKMF TAGSLAGAQELIASWLAKDRNKHGHYFTSRVPKMAAYGAIVSAPLGHFLIWLLQSFFRGRTSLKAKVMQIIVSNL VIAPIQNSIYLVAMALIAGARTYHQVRATVKVGFWRVMRVSWITSPICLAFAQKFLPDELWVPFFNLVSFVIGTY INTVTKKKRLAALRRKHFGDGRNNSGMGRSDDYPPQPMGPNPPY |
| Coding | >Ophio5|4958 ATGTCGGTCAAGTTCGAGCGCGAGACAGTCAAGCAGACGGCCCAAAGCGTCCTCTCCAGTGCCGTTCCTGAGCAT GGCTCTATCCCCGGCACAAGCGGCCGGCATCCCATCGCCGAGCGTGTCGGCACCGCCCTCACCGGCGGCATGAAG AACGCCGGCACCGAGGGTTACTTGGCCGCATACATCAAGCAGCTCGAGTCCAACCCGCTGCGCACCAAGATGTTC ACTGCCGGGTCCCTCGCCGGTGCACAGGAGCTCATCGCCTCGTGGCTGGCCAAGGATCGCAACAAACACGGCCAT TACTTCACCTCGCGCGTCCCCAAGATGGCCGCATATGGCGCCATCGTCAGCGCGCCCCTGGGCCACTTCCTCATC TGGCTCCTGCAAAGCTTCTTCCGCGGCCGCACCAGTCTCAAGGCCAAGGTCATGCAAATCATCGTCAGCAACTTG GTCATTGCGCCCATTCAGAACAGTATCTACTTGGTCGCCATGGCCCTGATTGCTGGTGCGCGCACCTATCACCAG GTCCGCGCCACCGTCAAGGTTGGCTTCTGGAGAGTTATGCGCGTCTCGTGGATCACGTCGCCCATTTGCCTCGCC TTTGCTCAAAAGTTCCTGCCCGACGAGCTCTGGGTGCCGTTCTTCAACCTCGTATCCTTCGTCATCGGTACCTAC ATCAACACCGTCACCAAGAAGAAGCGCCTCGCCGCCCTTCGCAGAAAGCACTTTGGCGACGGCCGCAACAACAGC GGCATGGGCCGATCCGACGATTATCCTCCTCAACCCATGGGCCCGAACCCGCCTTAC |
| Transcript | >Ophio5|4958 ATGTCGGTCAAGTTCGAGCGCGAGACAGTCAAGCAGACGGCCCAAAGCGTCCTCTCCAGTGCCGTTCCTGAGCAT GGCTCTATCCCCGGCACAAGCGGCCGGCATCCCATCGCCGAGCGTGTCGGCACCGCCCTCACCGGCGGCATGAAG AACGCCGGCACCGAGGGTTACTTGGCCGCATACATCAAGCAGCTCGAGTCCAACCCGCTGCGCACCAAGATGTTC ACTGCCGGGTCCCTCGCCGGTGCACAGGAGCTCATCGCCTCGTGGCTGGCCAAGGATCGCAACAAACACGGCCAT TACTTCACCTCGCGCGTCCCCAAGATGGCCGCATATGGCGCCATCGTCAGCGCGCCCCTGGGCCACTTCCTCATC TGGCTCCTGCAAAGCTTCTTCCGCGGCCGCACCAGTCTCAAGGCCAAGGTCATGCAAATCATCGTCAGCAACTTG GTCATTGCGCCCATTCAGAACAGTATCTACTTGGTCGCCATGGCCCTGATTGCTGGTGCGCGCACCTATCACCAG GTCCGCGCCACCGTCAAGGTTGGCTTCTGGAGAGTTATGCGCGTCTCGTGGATCACGTCGCCCATTTGCCTCGCC TTTGCTCAAAAGTTCCTGCCCGACGAGCTCTGGGTGCCGTTCTTCAACCTCGTATCCTTCGTCATCGGTACCTAC ATCAACACCGTCACCAAGAAGAAGCGCCTCGCCGCCCTTCGCAGAAAGCACTTTGGCGACGGCCGCAACAACAGC GGCATGGGCCGATCCGACGATTATCCTCCTCAACCCATGGGCCCGAACCCGCCTTACTAG |
| Gene | >Ophio5|4958 ATGTCGGTCAAGTTCGAGCGCGAGACAGTCAAGCAGACGGCCCAAAGCGTCCTCTCCAGTGCCGTTCCTGAGCAT GGCTCTATCCCCGGCACAAGCGGCCGGCATCCCATCGCCGAGCGTGTCGGCACCGCCCTCACCGGCGGCATGAAG AACGCCGGCACCGAGGGTTACTTGGCCGTATGTCGCCACGGCCTCGTCTGCCCGTAACGAGCTGACGTTTCCTCC CCTTCCACCCCCAGGCATACATCAAGCAGCTCGAGTCCAACCCGCTGCGCACCAAGATGTTCACTGCCGGGTCCC TCGCCGGTGCACAGGAGCTCATCGCCTCGTGGCTGGCCAAGGATCGCAACAAACACGGCCATTACTTCACCTCGC GCGTCCCCAAGATGGCCGCATATGGCGCCATCGTCAGCGCGCCCCTGGGCCACTTCCTCATCTGGCTCCTGCAAA GCTTCTTCCGCGGCCGCACCAGTCTCAAGGCCAAGGTCATGCAAATCATCGTCAGCAACTTGGTCGTGCGTGGAC CCCTGACTCGAGAGCTTTGCCCTCGTCCTTCAAGCGACTGACTAATTGACGGCATCCAGATTGCGCCCATTCAGA ACAGTATCTACTTGGTCGCCATGGCCCTGATTGCTGGTGCGCGCACCTATCACCAGGTCCGCGCCACCGTCAAGG TTGGCTTCTGGAGAGTTATGCGCGTCTCGTGGATCACGTCGCCCATTTGCCTCGCCTTTGCTCAAAAGTTCCTGC CCGACGAGCTCTGGGTGCCGTTCTTCAACCTCGTATCCTTCGTCATCGGTACCTACATCAACACCGTCACCAAGA AGAAGCGCCTCGCCGCCCTTCGCAGAAAGCACTTTGGCGACGGCCGCAACAACAGCGGCATGGGCCGATCCGACG ATTATCCTCCTCAACCCATGGGCCCGAACCCGCCTTACTAG |