© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|4957 |
| Gene name | |
| Location | scaffold_4:34884..35667 |
| Strand | + |
| Gene length (bp) | 783 |
| Transcript length (bp) | 783 |
| Coding sequence length (bp) | 780 |
| Protein length (aa) | 260 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04157 | EAP30 | EAP30/Vps36 family | 4.5E-72 | 6 | 237 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q5RJU0|SNF8_XENTR | Vacuolar-sorting protein SNF8 OS=Xenopus tropicalis GN=snf8 PE=2 SV=1 | 1 | 251 | 2.0E-64 |
| sp|Q9CZ28|SNF8_MOUSE | Vacuolar-sorting protein SNF8 OS=Mus musculus GN=Snf8 PE=1 SV=1 | 1 | 251 | 9.0E-64 |
| sp|Q5RK19|SNF8_RAT | Vacuolar-sorting protein SNF8 OS=Rattus norvegicus GN=Snf8 PE=1 SV=1 | 1 | 251 | 1.0E-63 |
| sp|Q96H20|SNF8_HUMAN | Vacuolar-sorting protein SNF8 OS=Homo sapiens GN=SNF8 PE=1 SV=1 | 1 | 251 | 1.0E-63 |
| sp|Q5U3V9|SNF8_DANRE | Vacuolar-sorting protein SNF8 OS=Danio rerio GN=snf8 PE=2 SV=2 | 1 | 260 | 2.0E-62 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q5RJU0|SNF8_XENTR | Vacuolar-sorting protein SNF8 OS=Xenopus tropicalis GN=snf8 PE=2 SV=1 | 1 | 251 | 2.0E-64 |
| sp|Q9CZ28|SNF8_MOUSE | Vacuolar-sorting protein SNF8 OS=Mus musculus GN=Snf8 PE=1 SV=1 | 1 | 251 | 9.0E-64 |
| sp|Q5RK19|SNF8_RAT | Vacuolar-sorting protein SNF8 OS=Rattus norvegicus GN=Snf8 PE=1 SV=1 | 1 | 251 | 1.0E-63 |
| sp|Q96H20|SNF8_HUMAN | Vacuolar-sorting protein SNF8 OS=Homo sapiens GN=SNF8 PE=1 SV=1 | 1 | 251 | 1.0E-63 |
| sp|Q5U3V9|SNF8_DANRE | Vacuolar-sorting protein SNF8 OS=Danio rerio GN=snf8 PE=2 SV=2 | 1 | 260 | 2.0E-62 |
| sp|O94663|SNF8_SCHPO | Vacuolar-sorting protein dot2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dot2 PE=3 SV=1 | 3 | 258 | 5.0E-59 |
| sp|Q5M759|VP221_ARATH | Vacuolar protein sorting-associated protein 22 homolog 1 OS=Arabidopsis thaliana GN=VP22-1 PE=2 SV=2 | 3 | 248 | 1.0E-54 |
| sp|Q12483|SNF8_YEAST | Vacuolar-sorting protein SNF8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SNF8 PE=1 SV=1 | 4 | 251 | 7.0E-50 |
| sp|Q54RC4|SNF8_DICDI | Vacuolar-sorting protein SNF8 OS=Dictyostelium discoideum GN=snf8 PE=3 SV=1 | 3 | 250 | 6.0E-45 |
| sp|Q9LIJ4|VP222_ARATH | Putative vacuolar protein sorting-associated protein 22 homolog 2 OS=Arabidopsis thaliana GN=VP22-2 PE=5 SV=1 | 71 | 196 | 1.0E-28 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 56 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|4957 MSRKGVGIGAFDRSRLTSQHYASHGSSLRASNASALSSQLAVFRALLQQFAQTHAKDIRSDPAFRAQFARMCTAI GVDPLASGDSSSGGGSIWAQLLGKTVNDFYFGLAVRVVDVCGATRGENGGLIGLRELSDRLSRHRQEAAANGADI TEDDVRRAVETLKPLGGGYGIIRVGRKEYVRSVPRELSSDQAAVVEAVQVLGYVSVGMLRDNLAWETARCRTVID DLVAQGMLWVDKQTRGEWEFWSPSFMVHADDGAPE |
| Coding | >Ophio5|4957 ATGTCCCGCAAGGGCGTCGGCATCGGCGCCTTCGACCGGTCCCGCCTCACATCGCAGCACTACGCTTCTCACGGC TCCTCGCTACGGGCGAGCAACGCCTCAGCGCTGTCCAGCCAGCTAGCCGTCTTCCGCGCCCTGTTGCAACAGTTT GCGCAAACGCACGCCAAGGACATACGTTCCGACCCTGCGTTCCGAGCGCAATTCGCGCGCATGTGCACCGCCATC GGTGTCGATCCCCTCGCCAGCGGTGACAGCAGCTCCGGCGGTGGGAGTATCTGGGCTCAGCTACTCGGCAAGACG GTCAATGATTTTTACTTTGGTCTTGCCGTACGCGTCGTCGATGTCTGTGGCGCCACCAGAGGGGAGAATGGTGGC TTGATTGGGCTTCGTGAGTTGAGCGATCGCCTCTCCCGTCATAGGCAGGAGGCTGCTGCCAACGGTGCCGATATT ACCGAGGACGACGTCCGCCGCGCTGTTGAGACGCTCAAGCCCCTCGGAGGCGGATACGGTATCATCCGCGTCGGA CGCAAGGAATACGTTCGCAGCGTGCCGCGCGAGCTGAGCAGCGACCAGGCCGCCGTTGTCGAGGCCGTCCAGGTC TTGGGCTACGTCAGCGTCGGCATGCTGCGCGACAATCTGGCCTGGGAGACGGCCCGCTGTCGTACCGTCATTGAC GACCTCGTTGCTCAGGGCATGCTCTGGGTCGATAAGCAGACGCGAGGCGAGTGGGAGTTTTGGAGCCCCAGCTTC ATGGTCCACGCCGACGACGGCGCTCCCGAG |
| Transcript | >Ophio5|4957 ATGTCCCGCAAGGGCGTCGGCATCGGCGCCTTCGACCGGTCCCGCCTCACATCGCAGCACTACGCTTCTCACGGC TCCTCGCTACGGGCGAGCAACGCCTCAGCGCTGTCCAGCCAGCTAGCCGTCTTCCGCGCCCTGTTGCAACAGTTT GCGCAAACGCACGCCAAGGACATACGTTCCGACCCTGCGTTCCGAGCGCAATTCGCGCGCATGTGCACCGCCATC GGTGTCGATCCCCTCGCCAGCGGTGACAGCAGCTCCGGCGGTGGGAGTATCTGGGCTCAGCTACTCGGCAAGACG GTCAATGATTTTTACTTTGGTCTTGCCGTACGCGTCGTCGATGTCTGTGGCGCCACCAGAGGGGAGAATGGTGGC TTGATTGGGCTTCGTGAGTTGAGCGATCGCCTCTCCCGTCATAGGCAGGAGGCTGCTGCCAACGGTGCCGATATT ACCGAGGACGACGTCCGCCGCGCTGTTGAGACGCTCAAGCCCCTCGGAGGCGGATACGGTATCATCCGCGTCGGA CGCAAGGAATACGTTCGCAGCGTGCCGCGCGAGCTGAGCAGCGACCAGGCCGCCGTTGTCGAGGCCGTCCAGGTC TTGGGCTACGTCAGCGTCGGCATGCTGCGCGACAATCTGGCCTGGGAGACGGCCCGCTGTCGTACCGTCATTGAC GACCTCGTTGCTCAGGGCATGCTCTGGGTCGATAAGCAGACGCGAGGCGAGTGGGAGTTTTGGAGCCCCAGCTTC ATGGTCCACGCCGACGACGGCGCTCCCGAGTGA |
| Gene | >Ophio5|4957 ATGTCCCGCAAGGGCGTCGGCATCGGCGCCTTCGACCGGTCCCGCCTCACATCGCAGCACTACGCTTCTCACGGC TCCTCGCTACGGGCGAGCAACGCCTCAGCGCTGTCCAGCCAGCTAGCCGTCTTCCGCGCCCTGTTGCAACAGTTT GCGCAAACGCACGCCAAGGACATACGTTCCGACCCTGCGTTCCGAGCGCAATTCGCGCGCATGTGCACCGCCATC GGTGTCGATCCCCTCGCCAGCGGTGACAGCAGCTCCGGCGGTGGGAGTATCTGGGCTCAGCTACTCGGCAAGACG GTCAATGATTTTTACTTTGGTCTTGCCGTACGCGTCGTCGATGTCTGTGGCGCCACCAGAGGGGAGAATGGTGGC TTGATTGGGCTTCGTGAGTTGAGCGATCGCCTCTCCCGTCATAGGCAGGAGGCTGCTGCCAACGGTGCCGATATT ACCGAGGACGACGTCCGCCGCGCTGTTGAGACGCTCAAGCCCCTCGGAGGCGGATACGGTATCATCCGCGTCGGA CGCAAGGAATACGTTCGCAGCGTGCCGCGCGAGCTGAGCAGCGACCAGGCCGCCGTTGTCGAGGCCGTCCAGGTC TTGGGCTACGTCAGCGTCGGCATGCTGCGCGACAATCTGGCCTGGGAGACGGCCCGCTGTCGTACCGTCATTGAC GACCTCGTTGCTCAGGGCATGCTCTGGGTCGATAAGCAGACGCGAGGCGAGTGGGAGTTTTGGAGCCCCAGCTTC ATGGTCCACGCCGACGACGGCGCTCCCGAGTGA |