© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|4954 |
| Gene name | |
| Location | scaffold_4:27426..29267 |
| Strand | + |
| Gene length (bp) | 1841 |
| Transcript length (bp) | 1530 |
| Coding sequence length (bp) | 1527 |
| Protein length (aa) | 509 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00515 | TPR_1 | Tetratricopeptide repeat | 1.8E-08 | 37 | 67 |
| PF07719 | TPR_2 | Tetratricopeptide repeat | 2.2E-06 | 37 | 66 |
| PF13424 | TPR_12 | Tetratricopeptide repeat | 2.3E-07 | 35 | 97 |
| PF13181 | TPR_8 | Tetratricopeptide repeat | 7.2E-06 | 37 | 67 |
| PF13174 | TPR_6 | Tetratricopeptide repeat | 9.4E-02 | 39 | 64 |
| PF13176 | TPR_7 | Tetratricopeptide repeat | 4.3E-06 | 39 | 68 |
| PF00564 | PB1 | PB1 domain | 8.2E-07 | 420 | 491 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O77775|NCF2_BOVIN | Neutrophil cytosol factor 2 OS=Bos taurus GN=NCF2 PE=2 SV=1 | 1 | 214 | 1.0E-35 |
| sp|P19878|NCF2_HUMAN | Neutrophil cytosol factor 2 OS=Homo sapiens GN=NCF2 PE=1 SV=2 | 1 | 214 | 4.0E-34 |
| sp|O70145|NCF2_MOUSE | Neutrophil cytosol factor 2 OS=Mus musculus GN=Ncf2 PE=1 SV=1 | 1 | 222 | 5.0E-32 |
| sp|Q86UR1|NOXA1_HUMAN | NADPH oxidase activator 1 OS=Homo sapiens GN=NOXA1 PE=1 SV=1 | 2 | 205 | 1.0E-26 |
| sp|A7E3N7|NOXA1_RAT | NADPH oxidase activator 1 OS=Rattus norvegicus GN=Noxa1 PE=2 SV=1 | 2 | 204 | 4.0E-25 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O77775|NCF2_BOVIN | Neutrophil cytosol factor 2 OS=Bos taurus GN=NCF2 PE=2 SV=1 | 1 | 214 | 1.0E-35 |
| sp|P19878|NCF2_HUMAN | Neutrophil cytosol factor 2 OS=Homo sapiens GN=NCF2 PE=1 SV=2 | 1 | 214 | 4.0E-34 |
| sp|O70145|NCF2_MOUSE | Neutrophil cytosol factor 2 OS=Mus musculus GN=Ncf2 PE=1 SV=1 | 1 | 222 | 5.0E-32 |
| sp|Q86UR1|NOXA1_HUMAN | NADPH oxidase activator 1 OS=Homo sapiens GN=NOXA1 PE=1 SV=1 | 2 | 205 | 1.0E-26 |
| sp|A7E3N7|NOXA1_RAT | NADPH oxidase activator 1 OS=Rattus norvegicus GN=Noxa1 PE=2 SV=1 | 2 | 204 | 4.0E-25 |
| sp|Q8CJ00|NOXA1_MOUSE | NADPH oxidase activator 1 OS=Mus musculus GN=Noxa1 PE=1 SV=1 | 2 | 204 | 7.0E-23 |
| sp|Q867T7|NCFA_DICDI | NADPH oxidase activator OS=Dictyostelium discoideum GN=ncfA PE=2 SV=1 | 3 | 128 | 3.0E-19 |
| sp|A7E3N2|NCF2_RAT | Neutrophil cytosol factor 2 OS=Rattus norvegicus GN=Ncf2 PE=2 SV=1 | 1 | 222 | 7.0E-11 |
| sp|B0JVY3|YCF3_MICAN | Photosystem I assembly protein Ycf3 OS=Microcystis aeruginosa (strain NIES-843) GN=ycf3 PE=3 SV=1 | 22 | 77 | 5.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005515 | protein binding | Yes |
| GO:0005488 | binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 51 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 541.68 | 212.43 | 870.92 |
| CcL | In ants, during behavior modification | 240.87 | 108.70 | 373.05 |
| CcD | In ants, recently dead | 100.08 | 53.87 | 146.29 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.004639 | yes |
| SC16a | CcD | 0.000286 | yes |
| CcL | CcD | 0.001217 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|4954 MSLKQEIETWVAALSRYDNNEFEEALGEFEKIADTSKILFNMGVIHATLGEHEKAVECYQRAIRLDQYLAVAYFQ QGVSNFLLGDFEEALANFNDTLLYLRGNTQIDYAQLGLLFKLYSCEVLFNRGLCYIYLQQMDAGMQDLVYAVKEK VVEDHNVIDEAIGEEAEGYTVFSIPVGVVYRPNDAKVRNLKTKDYLGKARLVAASDRANAFTGFTGSEIKNAGKV EGKDDRPTDNISFAATNLVRPELLSRRQQSEPPRNSNVFPPTPPPENDRPSRGASVRSGGGRPPAKLSIPSDTTN RRYLKSASPQDGRPWPPRSASTSTASRGFSRKPSRQTVDEDDMYPDDLYDMYQGGGGYGQRGSRPNNRARQRYAE QDDDGSDYDDGSLDGAEFEMLSSNRRGPSYRSGSRAPSRRSDIRKVRVKVHAEDVRYIMVGVAIEFPDLVDCIRE KFNLRRRFKMKIPDEDAPDGELITLGDQDDLEMAIQSVTDAAKRQRQDVARMEIWVYEA |
| Coding | >Ophio5|4954 ATGTCGCTCAAGCAGGAAATCGAGACCTGGGTAGCGGCCCTCAGTCGCTATGATAACAATGAATTCGAAGAAGCC CTCGGCGAATTTGAAAAGATCGCAGACACTAGCAAGATTCTGTTCAACATGGGTGTCATTCACGCCACCCTCGGC GAACACGAAAAAGCTGTCGAATGTTACCAGCGGGCTATCCGACTCGATCAATACCTTGCCGTTGCCTACTTCCAA CAGGGAGTCTCAAACTTTCTGCTCGGTGACTTCGAAGAGGCGCTAGCCAACTTTAATGACACGCTCTTGTATCTG CGCGGCAACACCCAGATTGACTATGCTCAGCTGGGACTCCTCTTCAAGCTGTATTCGTGCGAGGTTCTTTTCAAT CGGGGCCTCTGCTACATCTATCTCCAACAGATGGATGCCGGCATGCAGGACCTAGTTTATGCTGTCAAGGAAAAG GTGGTCGAGGATCACAACGTCATAGATGAGGCCATTGGCGAAGAGGCCGAGGGCTACACCGTCTTCTCCATCCCG GTCGGTGTTGTTTACCGACCCAATGATGCCAAAGTACGAAACCTCAAGACCAAGGACTATCTGGGTAAGGCGAGG CTGGTTGCTGCCTCAGACCGGGCCAATGCCTTCACTGGATTCACTGGCTCTGAGATCAAGAACGCTGGAAAGGTG GAGGGCAAGGACGATCGGCCGACGGATAACATCTCCTTTGCCGCGACGAACCTCGTCAGGCCCGAGCTCCTGTCC AGAAGACAGCAGTCCGAGCCGCCCAGAAACAGCAATGTTTTCCCCCCGACTCCCCCCCCCGAGAACGATCGCCCA AGTCGCGGCGCTTCTGTTCGAAGCGGGGGGGGAAGGCCGCCTGCAAAGCTAAGCATTCCTTCGGACACCACCAAC CGGAGATATCTCAAGTCGGCGTCACCGCAGGACGGTCGGCCGTGGCCTCCAAGGTCAGCCTCTACGTCTACCGCC AGCCGAGGTTTCTCGCGAAAGCCTTCGAGGCAGACAGTCGACGAGGACGACATGTACCCGGATGACTTATACGAC ATGTACCAGGGTGGTGGAGGCTACGGGCAGAGGGGCAGTCGACCCAACAATCGCGCGAGACAACGATACGCCGAA CAGGATGACGACGGCTCCGATTATGACGACGGGTCGCTGGATGGGGCCGAGTTCGAGATGTTGTCCAGCAATCGG CGTGGCCCGTCGTATAGGTCTGGCTCTCGCGCGCCTTCACGACGGTCAGACATTCGCAAGGTCAGGGTCAAGGTA CACGCCGAAGACGTCCGCTACATCATGGTCGGCGTTGCGATTGAGTTTCCGGACCTCGTTGACTGCATACGGGAA AAGTTCAACTTGCGGCGCAGATTCAAGATGAAGATCCCAGACGAGGATGCGCCGGACGGGGAGTTGATCACTCTG GGAGATCAGGACGACCTGGAAATGGCCATTCAGTCCGTCACGGACGCCGCCAAAAGACAGAGACAGGATGTGGCC AGGATGGAGATCTGGGTTTATGAGGCT |
| Transcript | >Ophio5|4954 ATGTCGCTCAAGCAGGAAATCGAGACCTGGGTAGCGGCCCTCAGTCGCTATGATAACAATGAATTCGAAGAAGCC CTCGGCGAATTTGAAAAGATCGCAGACACTAGCAAGATTCTGTTCAACATGGGTGTCATTCACGCCACCCTCGGC GAACACGAAAAAGCTGTCGAATGTTACCAGCGGGCTATCCGACTCGATCAATACCTTGCCGTTGCCTACTTCCAA CAGGGAGTCTCAAACTTTCTGCTCGGTGACTTCGAAGAGGCGCTAGCCAACTTTAATGACACGCTCTTGTATCTG CGCGGCAACACCCAGATTGACTATGCTCAGCTGGGACTCCTCTTCAAGCTGTATTCGTGCGAGGTTCTTTTCAAT CGGGGCCTCTGCTACATCTATCTCCAACAGATGGATGCCGGCATGCAGGACCTAGTTTATGCTGTCAAGGAAAAG GTGGTCGAGGATCACAACGTCATAGATGAGGCCATTGGCGAAGAGGCCGAGGGCTACACCGTCTTCTCCATCCCG GTCGGTGTTGTTTACCGACCCAATGATGCCAAAGTACGAAACCTCAAGACCAAGGACTATCTGGGTAAGGCGAGG CTGGTTGCTGCCTCAGACCGGGCCAATGCCTTCACTGGATTCACTGGCTCTGAGATCAAGAACGCTGGAAAGGTG GAGGGCAAGGACGATCGGCCGACGGATAACATCTCCTTTGCCGCGACGAACCTCGTCAGGCCCGAGCTCCTGTCC AGAAGACAGCAGTCCGAGCCGCCCAGAAACAGCAATGTTTTCCCCCCGACTCCCCCCCCCGAGAACGATCGCCCA AGTCGCGGCGCTTCTGTTCGAAGCGGGGGGGGAAGGCCGCCTGCAAAGCTAAGCATTCCTTCGGACACCACCAAC CGGAGATATCTCAAGTCGGCGTCACCGCAGGACGGTCGGCCGTGGCCTCCAAGGTCAGCCTCTACGTCTACCGCC AGCCGAGGTTTCTCGCGAAAGCCTTCGAGGCAGACAGTCGACGAGGACGACATGTACCCGGATGACTTATACGAC ATGTACCAGGGTGGTGGAGGCTACGGGCAGAGGGGCAGTCGACCCAACAATCGCGCGAGACAACGATACGCCGAA CAGGATGACGACGGCTCCGATTATGACGACGGGTCGCTGGATGGGGCCGAGTTCGAGATGTTGTCCAGCAATCGG CGTGGCCCGTCGTATAGGTCTGGCTCTCGCGCGCCTTCACGACGGTCAGACATTCGCAAGGTCAGGGTCAAGGTA CACGCCGAAGACGTCCGCTACATCATGGTCGGCGTTGCGATTGAGTTTCCGGACCTCGTTGACTGCATACGGGAA AAGTTCAACTTGCGGCGCAGATTCAAGATGAAGATCCCAGACGAGGATGCGCCGGACGGGGAGTTGATCACTCTG GGAGATCAGGACGACCTGGAAATGGCCATTCAGTCCGTCACGGACGCCGCCAAAAGACAGAGACAGGATGTGGCC AGGATGGAGATCTGGGTTTATGAGGCTTGA |
| Gene | >Ophio5|4954 ATGTCGCTCAAGCAGGTGAGTATCCTACTGCCGCGCCCTATCAGCAAAGACGACGGCGAACTAACCGGTTCGGGC GCAGGAAATCGAGACCTGGGTAGCGGCCCTCAGTCGCTATGATAACAATGAATTCGAAGAAGCCCTCGGCGAATT TGAAAAGATCGCAGACACTAGCAAGATTCTGTTCAACATGGGTGTCATTCACGCCACCCTCGGCGAACACGAAAA AGCTGTGAGAGCATATTGCCTCTGCCTACGCAGAGCGTATTGCTGACGCTAGCGTCCAGGTCGAATGTTACCAGC GGGCTATCCGACTCGATCAATACCTTGCCGTTGCCTACTTCCAACAGGGAGTCTCAAACTTTCTGCTCGGTGACT TCGAAGAGGCGCTAGCCAACTTTAATGACACGCTCTTGTATCTGCGCGGCAACACCCAGATTGACTATGCTCAGC TGGGACTCCTCTTCAAGCTGTATTCGTGCGAGGTTCTTTTCAATCGGGGCCTCTGCTACATCTATCTCCAACAGA TGGATGCCGGCATGCAGGACCTAGTTTATGCTGTCAAGGAAAAGGTGGTCGAGGATCACAACGTCATAGATGAGG CCATTGGCGAAGAGGCCGAGGTGAGTGAACCTGTCCTCTTCCCCGCTGGCCGACGTTGGTTACTCACAGCTGCAT CGCAGGGCTACACCGTCTTCTCCATCCCGGTCGGTGTTGTTTACCGACCCAATGATGCCAAAGTACGAAACCTCA AGACCAAGGACTATCTGGGTAAGGCGAGGCTGGTTGCTGCCTCAGACCGGGCCAATGCCTTCACTGGATTCACTG GCTCTGAGATCAAGAACGTGAGTTGTTTACGTCTTATCTTCCAGTCTAAGGACCTCATTACTTATCATTCTTGAC AGGCTGGAAAGGTGGAGGGCAAGGACGATCGGCCGACGGATAACATCTCCTTTGCCGCGACGAACCTCGTCAGGC CCGAGCTCCTGTCCAGAAGACAGCAGTCCGAGCCGCCCAGAAACAGCAATGTTTTCCCCCCGACTCCCCCCCCCG AGAACGATCGCCCAAGTCGCGGCGCTTCTGTTCGAAGCGGGGGGGGAAGGCCGCCTGCAAAGCTAAGCATTCCTT CGGACACCACCAACCGGAGATATCTCAAGTCGGCGTCACCGCAGGACGGTCGGCCGTGGCCTCCAAGGTCAGCCT CTACGTCTACCGCCAGCCGAGGTTTCTCGCGAAAGCCTTCGAGGCAGACAGTCGACGAGGACGACATGTACCCGG ATGACTTATACGACATGTACCAGGGTGGTGGAGGCTACGGGCAGAGGGGCAGTCGACCCAACAATCGCGCGAGAC AACGATACGCCGAACAGGATGACGACGGCTCCGATTATGACGACGGGTCGCTGGATGGGGCCGAGTTCGAGATGT TGTCCAGCAATCGGCGTGGCCCGTCGTATAGGTCTGGCTCTCGCGCGCCTTCACGACGGTCAGACATTCGCAAGG TCAGGGTCAAGGTACACGCCGAAGACGTCCGCTACATCATGGTCGGCGTTGCGATTGAGTTTCCGGACCTCGTTG ACTGCATACGGGAAAAGTTCAACTTGCGGCGCAGATTCAAGATGAAGATCCCAGACGAGGATGCGCCGGACGGGG AGTTGATCACTCTGGGAGATCAGGACGACCTGGAAATGGCCATTCAGTCCGTCACGGACGCCGCCAAAAGACAGA GACAGGATGTGGCCAGGATGGAGGTGAGCATGCCCCTCTTCTCTTTTTTAGCCCTGCTTCCTGCTTCGGTGAGTT TCGGCTGACGGCAGTGGCAGATCTGGGTTTATGAGGCTTGA |