Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophio5\|4918
Gene name
Location	scaffold_397:1909..3239
Strand	-
Gene length (bp)	1330
Transcript length (bp)	1143
Coding sequence length (bp)	1140
Protein length (aa)	380

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF04910	Tcf25	Transcriptional repressor TCF25	2.8E-28	29	247

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp\|O13796\|RCQ1_SCHPO	Ribosome quality control complex subunit 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rqc1 PE=1 SV=2	3	247	5.0E-17
sp\|Q05468\|RQC1_YEAST	Ribosome quality control complex subunit 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RQC1 PE=1 SV=1	28	288	4.0E-13
sp\|Q9BQ70\|TCF25_HUMAN	Transcription factor 25 OS=Homo sapiens GN=TCF25 PE=1 SV=1	3	247	7.0E-10
sp\|Q8R3L2\|TCF25_MOUSE	Transcription factor 25 OS=Mus musculus GN=Tcf25 PE=1 SV=2	3	247	2.0E-07

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 12	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophio5\|4918 MGDPMRLVYLLKQYPYHVSTLLQGNDGLNRQFWLAGYLYIKSLVRKGTFRTALEWARFLYSMDPDDPYAMRHLIH GLAVRAHESRWLVDFLDHVDERSDMQDVVYLRQTLVPALLQMGDVEGARNHLKQGVEQLPWLYCSLFQELNLDAP PSIWGISPDSDTKTLWTKLYILQTKDLWKNAQATCLLQEVTKDMGRVDLSAPPNQDPPVDRAVTRLCMLEGQGPL LALAPKALAESQPNYEFDPLPPPEAENIFTSRGTQLPWRDRRQQEEEQDAELLAQMNNLMARQAEFGAAPDDDDD DDDDEIMALRLADDEELQRDLEAHRRRADQPGMLAALMQVLGLGRDGDAASSATGTEEDETGSPPGAWPADEDGA GERSS
Coding	>Ophio5\|4918 ATGGGAGACCCGATGCGCCTGGTGTATCTGCTCAAGCAGTATCCGTATCACGTCTCGACACTGCTGCAGGGTAAC GACGGCCTCAACCGCCAGTTCTGGCTGGCAGGATATCTCTACATCAAGAGCCTCGTCCGAAAGGGAACCTTTCGG ACAGCGTTGGAGTGGGCCAGATTCCTCTACAGCATGGACCCTGACGACCCGTACGCCATGAGACATCTCATCCAC GGCCTGGCCGTGCGAGCTCATGAGTCGCGGTGGCTCGTCGACTTCTTGGATCATGTTGACGAGCGAAGCGACATG CAAGATGTCGTCTATCTCCGGCAGACGCTGGTCCCGGCGTTGCTACAAATGGGAGATGTTGAAGGAGCGCGGAAC CATCTCAAGCAAGGCGTCGAACAGCTTCCCTGGTTGTATTGCTCCCTGTTTCAGGAGCTCAACCTTGACGCGCCG CCGTCCATCTGGGGCATCAGCCCGGACTCGGATACGAAGACGCTCTGGACCAAGCTTTATATACTCCAAACCAAG GACTTGTGGAAAAACGCTCAGGCGACGTGTCTACTCCAGGAGGTGACCAAGGACATGGGCCGCGTGGACTTATCC GCGCCCCCCAACCAGGATCCCCCCGTCGACCGGGCGGTAACCAGACTATGCATGCTCGAGGGCCAGGGACCGCTG CTGGCCTTGGCGCCAAAGGCCCTGGCGGAGAGCCAGCCAAACTACGAGTTCGATCCGCTGCCGCCGCCCGAAGCG GAGAACATCTTCACATCACGGGGCACGCAACTCCCGTGGCGCGACCGACGGCAGCAGGAAGAGGAGCAGGACGCG GAGCTGCTGGCCCAGATGAACAATCTCATGGCACGCCAGGCAGAATTTGGCGCGGCTCCCGACGACGACGACGAC GACGACGATGACGAAATCATGGCGCTCAGGCTGGCCGACGACGAGGAGCTTCAGAGGGACCTGGAGGCGCACAGG AGGCGGGCAGACCAGCCGGGGATGCTGGCCGCGCTCATGCAGGTGCTGGGACTCGGCCGAGATGGAGACGCGGCG TCTAGCGCGACAGGAACGGAGGAGGATGAGACCGGTTCTCCACCGGGAGCGTGGCCCGCGGACGAAGACGGGGCC GGGGAGCGGTCGTCG
Transcript	>Ophio5\|4918 ATGGGAGACCCGATGCGCCTGGTGTATCTGCTCAAGCAGTATCCGTATCACGTCTCGACACTGCTGCAGGGTAAC GACGGCCTCAACCGCCAGTTCTGGCTGGCAGGATATCTCTACATCAAGAGCCTCGTCCGAAAGGGAACCTTTCGG ACAGCGTTGGAGTGGGCCAGATTCCTCTACAGCATGGACCCTGACGACCCGTACGCCATGAGACATCTCATCCAC GGCCTGGCCGTGCGAGCTCATGAGTCGCGGTGGCTCGTCGACTTCTTGGATCATGTTGACGAGCGAAGCGACATG CAAGATGTCGTCTATCTCCGGCAGACGCTGGTCCCGGCGTTGCTACAAATGGGAGATGTTGAAGGAGCGCGGAAC CATCTCAAGCAAGGCGTCGAACAGCTTCCCTGGTTGTATTGCTCCCTGTTTCAGGAGCTCAACCTTGACGCGCCG CCGTCCATCTGGGGCATCAGCCCGGACTCGGATACGAAGACGCTCTGGACCAAGCTTTATATACTCCAAACCAAG GACTTGTGGAAAAACGCTCAGGCGACGTGTCTACTCCAGGAGGTGACCAAGGACATGGGCCGCGTGGACTTATCC GCGCCCCCCAACCAGGATCCCCCCGTCGACCGGGCGGTAACCAGACTATGCATGCTCGAGGGCCAGGGACCGCTG CTGGCCTTGGCGCCAAAGGCCCTGGCGGAGAGCCAGCCAAACTACGAGTTCGATCCGCTGCCGCCGCCCGAAGCG GAGAACATCTTCACATCACGGGGCACGCAACTCCCGTGGCGCGACCGACGGCAGCAGGAAGAGGAGCAGGACGCG GAGCTGCTGGCCCAGATGAACAATCTCATGGCACGCCAGGCAGAATTTGGCGCGGCTCCCGACGACGACGACGAC GACGACGATGACGAAATCATGGCGCTCAGGCTGGCCGACGACGAGGAGCTTCAGAGGGACCTGGAGGCGCACAGG AGGCGGGCAGACCAGCCGGGGATGCTGGCCGCGCTCATGCAGGTGCTGGGACTCGGCCGAGATGGAGACGCGGCG TCTAGCGCGACAGGAACGGAGGAGGATGAGACCGGTTCTCCACCGGGAGCGTGGCCCGCGGACGAAGACGGGGCC GGGGAGCGGTCGTCGTGA
Gene	>Ophio5\|4918 ATGGGAGACCCGATGCGCCTGGTGTATCTGCTCAAGCAGTATCGTAAGTCGGTCGGTCCCCCGCGAGTGATGAGT TGGAGGCTGACTTCTCAAAGCGTATCACGTCTCGACACTGCTGCAGGTGAGCCTGGTAGCCCAGGTCGACCAGAA CATGGCCCTGGCCGCTGAGCTCTGCGAGAGAGCCCTGTTCACGTTTGGCAGGGTAACGACGGCCTCGTTCAGACG GGACTTGGAACGCGGCTGTGCCCGTCTGGACTTTCGCAGGCCCGAGAACCGCCAGTTCTGGCTGGCAGGATATCT CTACATCAAGAGCCTCGTCCGAAAGGGAACCTTTCGGACAGCGTTGGAGTGGGCCAGATTCCTCTACAGCATGGA CCCTGACGACCCGTACGCCATGAGACATCTCATCCACGGCCTGGCCGTGCGAGCTCATGAGTCGCGGTGGCTCGT CGACTTCTTGGATCATGTTGACGAGCGAAGCGACATGCAAGATGTCGTCTATCTCCGGCAGACGCTGGTCCCGGC GTTGCTACAAATGGGAGATGTTGAAGGAGCGCGGAACCATCTCAAGCAAGGCGTCGAACAGCTTCCCTGGTTGTA TTGCTCCCTGTTTCAGGAGCTCAACCTTGACGCGCCGCCGTCCATCTGGGGCATCAGCCCGGACTCGGATACGAA GACGCTCTGGACCAAGCTTTATATACTCCAAACCAAGGACTTGTGGAAAAACGCTCAGGCGACGTGTCTACTCCA GGAGGTGACCAAGGACATGGGCCGCGTGGACTTATCCGCGCCCCCCAACCAGGATCCCCCCGTCGACCGGGCGGT AACCAGACTATGCATGCTCGAGGGCCAGGGACCGCTGCTGGCCTTGGCGCCAAAGGCCCTGGCGGAGAGCCAGCC AAACTACGAGTTCGATCCGCTGCCGCCGCCCGAAGCGGAGAACATCTTCACATCACGGGGCACGCAACTCCCGTG GCGCGACCGACGGCAGCAGGAAGAGGAGCAGGACGCGGAGCTGCTGGCCCAGATGAACAATCTCATGGCACGCCA GGCAGAATTTGGCGCGGCTCCCGACGACGACGACGACGACGACGATGACGAAATCATGGCGCTCAGGCTGGCCGA CGACGAGGAGCTTCAGAGGGACCTGGAGGCGCACAGGAGGCGGGCAGACCAGCCGGGGATGCTGGCCGCGCTCAT GCAGGTGCTGGGACTCGGCCGAGATGGAGACGCGGCGTCTAGCGCGACAGGAACGGAGGAGGATGAGACCGGTTC TCCACCGGGAGCGTGGCCCGCGGACGAAGACGGGGCCGGGGAGCGGTCGTCGTGA

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