© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|489 |
| Gene name | |
| Location | scaffold_111:38209..39985 |
| Strand | + |
| Gene length (bp) | 1776 |
| Transcript length (bp) | 1656 |
| Coding sequence length (bp) | 1653 |
| Protein length (aa) | 551 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00098 | zf-CCHC | Zinc knuckle | 9.6E-06 | 17 | 33 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003676 | nucleic acid binding | Yes |
| GO:0008270 | zinc ion binding | Yes |
| GO:0046914 | transition metal ion binding | No |
| GO:0046872 | metal ion binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:0003674 | molecular_function | No |
| GO:0043169 | cation binding | No |
| GO:0043167 | ion binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 33 | 0.45 |
| Transcription Factor Class (based on PFAM domains) |
|---|
| Zinc finger, CCHC-type |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 30.59 | 15.85 | 45.33 |
| CcL | In ants, during behavior modification | 64.18 | 33.31 | 95.05 |
| CcD | In ants, recently dead | 39.53 | 21.30 | 57.77 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.000535 | yes |
| SC16a | CcD | 0.287940 | no |
| CcL | CcD | 0.035861 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|489 MTESAHGRHCGQAQEPRCYNCGSHGHWAVACPEPTRETPAGLAAWRSASAANQGHGKNHGYSSGSKRSKGPIITK YSPPSFASPMGPYPPPPSLPPTGNQPPSGLYPAQPYPLLFPPSYPQPVLSYHASVQFAPPAPYCMPHYGQPAHPG FPGPLPPPPSPLAPNLEYMPPHPPYHALFPPLAPSHKIAHPKASPPHGRQAELAPSIGKPPTAILSHPLPPKPPP SHDQMKPQRDYKQKRKSDRHHYQEKNSKSFRSNGFKAPNSRAHGSPPADRSPPGYSPVHGRLGNGDAELSSFADA RHASRSPEKQADEVQASVVTKAEDKAGADVVEKCADGNELASTEEGYSPRPVDGTDGREKPLSPRSQEMGTSEVE LAAFDNAASATVEASDEQEDGEVSSNEDTLSPVLHHQAVADERGNSPAVEDRWRRKRRYSDEWDDDESYAKRARP NGTSRVHDRTSDDDLWDSLNVPRQADRKRRGSAASRGSRHSSVSSKSSDLNSLEAELLGRPVKQRQTEEASPPSR TRSERRPVSKPKRRQTNTNSAYSRRW |
| Coding | >Ophio5|489 ATGACAGAATCAGCGCATGGCCGCCACTGCGGCCAGGCCCAAGAACCCCGATGCTACAACTGCGGCTCTCATGGC CACTGGGCCGTCGCATGTCCCGAGCCGACGCGGGAGACGCCTGCTGGTCTGGCCGCCTGGAGGAGTGCATCGGCC GCCAACCAGGGTCATGGCAAGAACCATGGCTACAGTTCCGGCTCTAAGAGGTCCAAGGGGCCCATCATCACCAAG TACTCACCTCCTTCCTTCGCGTCGCCCATGGGACCATACCCGCCGCCGCCGTCTCTTCCACCTACCGGAAACCAG CCGCCCTCGGGGCTCTATCCCGCCCAGCCCTACCCTCTCCTGTTCCCGCCGAGCTACCCGCAGCCTGTCTTGTCC TATCACGCCTCCGTCCAGTTTGCGCCACCGGCTCCCTATTGTATGCCTCATTACGGTCAGCCCGCACATCCGGGC TTTCCAGGTCCGCTGCCACCGCCACCAAGCCCTCTTGCGCCGAACCTCGAATACATGCCACCTCACCCGCCTTAC CATGCCTTATTCCCTCCTCTGGCTCCCTCCCACAAGATTGCACATCCAAAGGCTTCTCCCCCTCACGGCCGGCAG GCGGAGTTGGCGCCCTCCATCGGCAAGCCGCCCACTGCCATACTCAGTCACCCCCTTCCGCCAAAACCTCCGCCA AGTCATGACCAGATGAAGCCGCAGCGCGACTACAAACAAAAACGGAAAAGCGACCGTCACCATTATCAGGAAAAG AACTCCAAGAGCTTCCGATCCAACGGTTTCAAGGCGCCCAACTCGAGAGCGCACGGCTCGCCTCCTGCCGATCGC TCCCCGCCGGGTTACTCGCCGGTCCACGGGCGGCTAGGGAACGGAGATGCCGAGCTCAGCAGCTTCGCAGACGCA CGTCACGCGTCTCGGTCGCCCGAGAAACAAGCCGATGAGGTGCAAGCCTCAGTCGTGACAAAAGCAGAGGATAAG GCCGGTGCTGACGTCGTCGAAAAGTGCGCCGATGGCAACGAGTTGGCGAGTACTGAAGAAGGATATTCGCCTCGA CCCGTTGACGGAACGGATGGCCGAGAGAAGCCGCTTTCGCCGCGCAGTCAGGAAATGGGGACCAGTGAAGTGGAG TTGGCCGCCTTCGACAATGCAGCTTCCGCCACCGTGGAAGCTAGTGACGAGCAGGAAGACGGCGAAGTCTCCAGC AATGAAGACACCCTGAGCCCTGTTCTTCATCACCAAGCCGTAGCCGACGAGAGGGGCAACTCGCCGGCCGTCGAG GACCGCTGGAGACGGAAACGCCGCTATAGCGACGAATGGGACGACGACGAATCGTATGCGAAGAGGGCGAGGCCA AACGGCACGTCGCGTGTTCACGACAGGACCAGCGACGACGACCTCTGGGACTCGCTCAACGTGCCGAGACAGGCC GACCGGAAGAGACGCGGGTCGGCAGCCTCGCGCGGGTCGCGGCACTCGTCCGTCTCTAGCAAGTCATCGGACCTC AACTCGCTCGAGGCCGAGCTGCTGGGCCGGCCGGTGAAGCAGAGACAGACAGAGGAAGCCAGTCCGCCTTCACGG ACGCGGTCGGAGCGCAGGCCCGTCTCCAAGCCCAAGCGGAGGCAGACAAATACCAACTCGGCTTATAGTCGCCGA TGG |
| Transcript | >Ophio5|489 ATGACAGAATCAGCGCATGGCCGCCACTGCGGCCAGGCCCAAGAACCCCGATGCTACAACTGCGGCTCTCATGGC CACTGGGCCGTCGCATGTCCCGAGCCGACGCGGGAGACGCCTGCTGGTCTGGCCGCCTGGAGGAGTGCATCGGCC GCCAACCAGGGTCATGGCAAGAACCATGGCTACAGTTCCGGCTCTAAGAGGTCCAAGGGGCCCATCATCACCAAG TACTCACCTCCTTCCTTCGCGTCGCCCATGGGACCATACCCGCCGCCGCCGTCTCTTCCACCTACCGGAAACCAG CCGCCCTCGGGGCTCTATCCCGCCCAGCCCTACCCTCTCCTGTTCCCGCCGAGCTACCCGCAGCCTGTCTTGTCC TATCACGCCTCCGTCCAGTTTGCGCCACCGGCTCCCTATTGTATGCCTCATTACGGTCAGCCCGCACATCCGGGC TTTCCAGGTCCGCTGCCACCGCCACCAAGCCCTCTTGCGCCGAACCTCGAATACATGCCACCTCACCCGCCTTAC CATGCCTTATTCCCTCCTCTGGCTCCCTCCCACAAGATTGCACATCCAAAGGCTTCTCCCCCTCACGGCCGGCAG GCGGAGTTGGCGCCCTCCATCGGCAAGCCGCCCACTGCCATACTCAGTCACCCCCTTCCGCCAAAACCTCCGCCA AGTCATGACCAGATGAAGCCGCAGCGCGACTACAAACAAAAACGGAAAAGCGACCGTCACCATTATCAGGAAAAG AACTCCAAGAGCTTCCGATCCAACGGTTTCAAGGCGCCCAACTCGAGAGCGCACGGCTCGCCTCCTGCCGATCGC TCCCCGCCGGGTTACTCGCCGGTCCACGGGCGGCTAGGGAACGGAGATGCCGAGCTCAGCAGCTTCGCAGACGCA CGTCACGCGTCTCGGTCGCCCGAGAAACAAGCCGATGAGGTGCAAGCCTCAGTCGTGACAAAAGCAGAGGATAAG GCCGGTGCTGACGTCGTCGAAAAGTGCGCCGATGGCAACGAGTTGGCGAGTACTGAAGAAGGATATTCGCCTCGA CCCGTTGACGGAACGGATGGCCGAGAGAAGCCGCTTTCGCCGCGCAGTCAGGAAATGGGGACCAGTGAAGTGGAG TTGGCCGCCTTCGACAATGCAGCTTCCGCCACCGTGGAAGCTAGTGACGAGCAGGAAGACGGCGAAGTCTCCAGC AATGAAGACACCCTGAGCCCTGTTCTTCATCACCAAGCCGTAGCCGACGAGAGGGGCAACTCGCCGGCCGTCGAG GACCGCTGGAGACGGAAACGCCGCTATAGCGACGAATGGGACGACGACGAATCGTATGCGAAGAGGGCGAGGCCA AACGGCACGTCGCGTGTTCACGACAGGACCAGCGACGACGACCTCTGGGACTCGCTCAACGTGCCGAGACAGGCC GACCGGAAGAGACGCGGGTCGGCAGCCTCGCGCGGGTCGCGGCACTCGTCCGTCTCTAGCAAGTCATCGGACCTC AACTCGCTCGAGGCCGAGCTGCTGGGCCGGCCGGTGAAGCAGAGACAGACAGAGGAAGCCAGTCCGCCTTCACGG ACGCGGTCGGAGCGCAGGCCCGTCTCCAAGCCCAAGCGGAGGCAGACAAATACCAACTCGGCTTATAGTCGCCGA TGGTAG |
| Gene | >Ophio5|489 ATGACAGAATCAGCGCATGGCCGCCACTGCGGCCAGGCCCAAGAACCCCGATGCTACAACTGCGGCTCTCATGGC CACTGGGCCGTCGCATGTCCCGAGCCGACGCGGGAGACGCCTGCGTGAGCCTCTCCTTGTCTCCCCTCATGGGCT CATGTCTGCTAACTCGAACCTTGTTGCTTCCAGTGGTCTGGCCGCCTGGAGGAGTGCATCGGCCGCCAACCAGGG TCATGGCAAGAACCATGGCTACAGTTCCGGCTCTAAGAGGTCCAAGGGGCCCATCATCACCAAGTACTCACCTCC TTCCTTCGCGTCGCCCATGGGACCATACCCGCCGCCGCCGTCTCTTCCACCTACCGGAAACCAGCCGCCCTCGGG GCTCTATCCCGCCCAGCCCTACCCTCTCCTGTTCCCGCCGAGCTACCCGCAGCCTGTCTTGTCCTATCACGCCTC CGTCCAGTTTGCGCCACCGGCTCCCTATTGTATGCCTCATTACGGTCAGCCCGCACATCCGGGCTTTCCAGGTCC GCTGCCACCGCCACCAAGCCCTCTTGCGCCGAACCTCGAATACATGCCACCTCACCCGCCTTACCATGCCTTATT CCCTCCTCTGGCTCCCTCCCACAAGATTGCACATCCAAAGGCTTCTCCCCCTCACGGCCGGCAGGCGGAGTTGGC GCCCTCCATCGGCAAGCCGCCCACTGCCATACTCAGTCACCCCCTTCCGCCAAAACCTCCGCCAAGTCATGACCA GATGAAGCCGCAGCGCGACTACAAACAAAAACGGAAAAGCGACCGTCACCATTATCAGGAAAAGAACTCCAAGAG CTTCCGATCCAACGGTTTCAAGGCGCCCAACTCGAGAGCGCACGGCTCGCCTCCTGCCGATCGCTCCCCGCCGGG TTACTCGCCGGTCCACGGGCGGCTAGGGAACGGAGATGCCGAGCTCAGCAGCTTCGCAGACGCACGTCACGCGTC TCGGTCGCCCGAGAAACAAGCCGATGAGGTGCAAGCCTCAGTCGTGACAAAAGCAGAGGATAAGGCCGGTGCTGA CGTCGTCGAAAAGTGCGCCGATGGCAACGAGTTGGCGAGTACTGAAGAAGGATATTCGCCTCGACCCGTTGACGG AACGGATGGCCGAGAGAAGCCGCTTTCGCCGCGCAGTCAGGAAATGGGGACCAGTGAAGTGGAGTTGGCCGCCTT CGACAATGCAGCTTCCGCCACCGTGGAAGCTAGTGACGAGCAGGAAGACGGCGAAGTCTCCAGCAATGAAGACAC CCTGAGCCCTGTTCTTCATCACCAAGCCGTAGCCGACGAGAGGGGCAACTCGCCGGCCGTCGAGGACCGCTGGAG ACGGAAACGCCGCTATAGCGACGAATGGGACGACGACGAATCGTATGCGAAGAGGGCGAGGCCAAACGGCACGTC GCGTGTTCACGACAGGACCAGCGACGACGACCTCTGGGACTCGCTCAACGTGCCGAGACAGGCCGACCGGAAGAG ACGCGGGTCGGCAGCCTCGCGCGGGTCGCGGCACTCGTCCGTCTCTAGCAAGTCATCGGACCTCAACTCGCTCGA GGCCGAGCTGCTGGGCCGGCCGGTGAAGCAGAGACAGACAGAGGAAGCCAGTCCGCCTTCACGGACGCGGTCGGA GCGCAGGCCCGTCTCCAAGCCCAAGCGGAGGCAGACAAATACCAACTCGGCTTATAGGTATACTGCTGTCCTGTT TCCGAGAGAGACGTGAACAAGTTCTGACGAGATGACAGTCGCCGATGGTAG |