Protein ID | Ophio5|4878 |
Gene name | |
Location | scaffold_391:13050..15209 |
Strand | + |
Gene length (bp) | 2159 |
Transcript length (bp) | 2091 |
Coding sequence length (bp) | 2088 |
Protein length (aa) | 696 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF07576 | BRAP2 | BRCA1-associated protein 2 | 4.0E-27 | 210 | 299 |
PF02148 | zf-UBP | Zn-finger in ubiquitin-hydrolases and other protein | 2.3E-18 | 411 | 469 |
PF13639 | zf-RING_2 | Ring finger domain | 1.3E-08 | 342 | 382 |
PF17123 | zf-RING_11 | RING-like zinc finger | 8.7E-07 | 343 | 370 |
PF00097 | zf-C3HC4 | Zinc finger, C3HC4 type (RING finger) | 7.6E-06 | 343 | 381 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|O13747|EPT1_SCHPO | RING finger protein ETP1 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC16E8.13 PE=3 SV=1 | 152 | 691 | 1.0E-98 |
sp|P38748|ETP1_YEAST | RING finger protein ETP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ETP1 PE=1 SV=1 | 181 | 665 | 9.0E-80 |
sp|Q7Z569|BRAP_HUMAN | BRCA1-associated protein OS=Homo sapiens GN=BRAP PE=1 SV=2 | 179 | 666 | 6.0E-66 |
sp|Q95QN6|BRAP2_CAEEL | BRCA1-associated protein homolog 2 OS=Caenorhabditis elegans GN=brap-2 PE=3 SV=1 | 179 | 696 | 1.0E-65 |
sp|Q99MP8|BRAP_MOUSE | BRCA1-associated protein OS=Mus musculus GN=Brap PE=1 SV=1 | 179 | 666 | 2.0E-64 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|O13747|EPT1_SCHPO | RING finger protein ETP1 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC16E8.13 PE=3 SV=1 | 152 | 691 | 1.0E-98 |
sp|P38748|ETP1_YEAST | RING finger protein ETP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ETP1 PE=1 SV=1 | 181 | 665 | 9.0E-80 |
sp|Q7Z569|BRAP_HUMAN | BRCA1-associated protein OS=Homo sapiens GN=BRAP PE=1 SV=2 | 179 | 666 | 6.0E-66 |
sp|Q95QN6|BRAP2_CAEEL | BRCA1-associated protein homolog 2 OS=Caenorhabditis elegans GN=brap-2 PE=3 SV=1 | 179 | 696 | 1.0E-65 |
sp|Q99MP8|BRAP_MOUSE | BRCA1-associated protein OS=Mus musculus GN=Brap PE=1 SV=1 | 179 | 666 | 2.0E-64 |
sp|D2HBJ8|UBP44_AILME | Ubiquitin carboxyl-terminal hydrolase 44 OS=Ailuropoda melanoleuca GN=USP44 PE=3 SV=1 | 411 | 496 | 1.0E-07 |
sp|Q7ZUM8|UBP44_DANRE | Ubiquitin carboxyl-terminal hydrolase 44 OS=Danio rerio GN=usp44 PE=2 SV=1 | 411 | 480 | 2.0E-07 |
sp|Q9H0E7|UBP44_HUMAN | Ubiquitin carboxyl-terminal hydrolase 44 OS=Homo sapiens GN=USP44 PE=1 SV=2 | 411 | 468 | 3.0E-07 |
sp|Q70CQ1|UBP49_HUMAN | Ubiquitin carboxyl-terminal hydrolase 49 OS=Homo sapiens GN=USP49 PE=1 SV=1 | 402 | 497 | 6.0E-07 |
sp|Q8C2S0|UBP44_MOUSE | Ubiquitin carboxyl-terminal hydrolase 44 OS=Mus musculus GN=Usp44 PE=2 SV=3 | 406 | 483 | 1.0E-06 |
sp|Q0V9G5|UBP44_XENTR | Ubiquitin carboxyl-terminal hydrolase 44 OS=Xenopus tropicalis GN=usp44 PE=2 SV=1 | 411 | 468 | 1.0E-06 |
sp|Q6P9L4|UBP49_MOUSE | Ubiquitin carboxyl-terminal hydrolase 49 OS=Mus musculus GN=Usp49 PE=2 SV=1 | 402 | 497 | 1.0E-06 |
sp|Q5XGZ2|UP44B_XENLA | Ubiquitin carboxyl-terminal hydrolase 44-B OS=Xenopus laevis GN=usp44-b PE=2 SV=1 | 411 | 468 | 2.0E-06 |
sp|Q6NTR6|UP44A_XENLA | Ubiquitin carboxyl-terminal hydrolase 44-A OS=Xenopus laevis GN=usp44-a PE=2 SV=1 | 411 | 468 | 2.0E-06 |
sp|Q54QE6|SIR2A_DICDI | NAD-dependent deacetylase sir2A OS=Dictyostelium discoideum GN=sir2A PE=2 SV=1 | 411 | 470 | 4.0E-06 |
GO Term | Description | Terminal node |
---|---|---|
GO:0046872 | metal ion binding | Yes |
GO:0008270 | zinc ion binding | Yes |
GO:0046914 | transition metal ion binding | No |
GO:0005488 | binding | No |
GO:0003674 | molecular_function | No |
GO:0043169 | cation binding | No |
GO:0043167 | ion binding | No |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Cytoplasm|Nucleus | Nuclear localization signal | 0.7703 | 0.5642 | 0.0729 | 0.0468 | 0.2846 | 0.0051 | 0.1091 | 0.0616 | 0.2684 | 0.0252 |
Orthofinder run ID | 4 |
Orthogroup | 4971 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ophio5|4878 MVTPHYFYHLKFELYPTPNPESEESSTELVAGIWLPPPEASAFDRLPSHPRRERVVRDDRREAREGTARGDSDVV YGSHFKLSVIDCGSGSGPRIEEERHRRQRTSSSAAAPAPHKAVRDWRFGRVSIETSDPTTAADEMPPSEASKPGP SAAPTLGPSFGGAGTATKAECLPLDTKHTELGWGVVRFYREGNETPAAALDDSETPAEEACCVLCIPAVPAYMSP GDFMGFVGDRWMGDISHCRMVMTSSMNRYLVLLRFREAERAKLWKREFDGKVFNSIESRVCHVVMVKSITFETPT RPRRNDHPVATATAPSSSSSVVVSASLKPFPPPTPNLIELPTCPVCLERMDETNGLMTIPCSHVFHCTCLQNWRG AGCPVCRFTNASSQAGADDTDDPNSRSFGAPVSNLCSVCDCADDLWICLICGHVGCGRYKGGHAKDHWKETAHCF ALELETQHVWDYAGDMWVHRLIRDKGDGKVVELPGRGSPHGGQGQQQAREDDGDVVPRAKLENIGLEYTHLITSQ LESQRAYYEDMISKAADKAATAAAAAESSTARTAELAERLARLEEQYKTVSTETVPQLERDLERQRCKAERAEKL ARSLSQSVQEEKRINEGLMQRIAHLDSSAEAARGELETLRKDKAELEEVNHDLTMYISGQEKLKEMEREGMLGEG EAVDGTVGVPESRSRRRQRKR |
Coding | >Ophio5|4878 ATGGTGACGCCTCATTACTTTTACCATCTGAAGTTCGAGCTCTATCCCACCCCGAACCCCGAGAGCGAGGAATCG TCGACGGAGCTGGTGGCAGGCATCTGGCTCCCGCCGCCAGAGGCCAGCGCCTTTGATCGTCTGCCGTCACATCCG AGGCGCGAGCGGGTGGTGCGCGACGATAGGAGGGAAGCTCGCGAGGGGACAGCGAGGGGCGACAGCGACGTCGTT TACGGGAGCCATTTCAAATTGAGCGTCATCGACTGCGGCAGCGGAAGCGGTCCTCGCATCGAGGAGGAGCGACAC AGACGGCAGAGGACGTCATCGAGCGCAGCAGCCCCAGCGCCGCACAAGGCCGTACGTGACTGGCGATTCGGGCGC GTGAGCATCGAGACGTCCGATCCGACGACGGCGGCGGACGAGATGCCGCCGAGCGAGGCCAGCAAACCGGGCCCT TCGGCAGCGCCGACGCTGGGCCCGTCCTTCGGCGGCGCCGGCACCGCGACCAAAGCCGAATGCCTGCCGCTGGAC ACGAAGCACACGGAGCTGGGCTGGGGCGTCGTCCGTTTCTACCGCGAAGGCAACGAGACGCCGGCGGCGGCCCTC GACGACAGCGAGACGCCGGCCGAAGAGGCCTGTTGCGTGCTGTGCATCCCTGCCGTGCCGGCGTATATGTCGCCG GGCGACTTCATGGGCTTCGTCGGGGACCGCTGGATGGGCGACATCAGCCATTGCCGCATGGTCATGACGTCTAGC ATGAATCGCTATCTCGTTCTGCTCCGGTTTCGGGAGGCGGAGAGGGCCAAGCTGTGGAAGCGTGAGTTTGACGGC AAGGTCTTTAATTCGATAGAGTCCCGAGTTTGCCACGTCGTCATGGTCAAGTCCATCACGTTCGAGACGCCGACG AGGCCACGGCGGAACGATCACCCGGTGGCGACGGCGACGGCGCCGTCGTCTTCGTCGTCGGTCGTCGTCTCGGCT AGCCTCAAGCCTTTTCCGCCCCCGACGCCCAACCTCATCGAGCTGCCGACCTGTCCCGTCTGCCTGGAGAGGATG GACGAGACCAACGGGCTGATGACGATACCGTGCTCTCACGTCTTTCACTGCACCTGTCTACAGAACTGGAGAGGA GCCGGCTGCCCGGTCTGCCGCTTCACAAATGCCTCGTCTCAGGCGGGCGCCGACGACACCGACGACCCCAACTCG CGGTCTTTCGGGGCGCCAGTCTCGAACCTCTGCAGCGTATGCGACTGCGCCGACGACCTCTGGATCTGCCTGATC TGCGGCCACGTCGGCTGCGGTCGATACAAGGGCGGCCACGCCAAGGACCATTGGAAAGAGACAGCACACTGCTTC GCGCTAGAGTTAGAGACCCAACACGTCTGGGACTACGCGGGAGACATGTGGGTGCATCGCCTGATCCGCGACAAG GGTGACGGCAAGGTTGTCGAGCTGCCGGGTCGAGGGAGCCCCCATGGCGGGCAGGGACAGCAGCAGGCACGCGAG GACGACGGAGACGTAGTGCCGCGAGCCAAGCTGGAAAACATCGGGCTCGAGTACACACACCTGATTACGAGTCAG CTGGAGTCGCAGCGAGCCTACTACGAAGACATGATCAGCAAGGCAGCCGACAAGGCGGCTACGGCGGCGGCGGCG GCAGAAAGCAGCACGGCGCGAACGGCCGAGCTGGCGGAACGACTGGCTCGTCTGGAAGAGCAATACAAGACGGTC AGCACCGAGACGGTACCGCAGCTGGAGCGCGACCTGGAACGGCAGCGATGCAAGGCCGAGCGGGCGGAGAAGCTG GCACGCAGTCTAAGCCAGTCGGTACAGGAGGAGAAGCGAATCAACGAGGGGCTGATGCAGCGCATCGCTCACCTC GACTCCTCGGCCGAGGCGGCTCGCGGGGAGCTGGAGACGCTGCGCAAGGACAAGGCCGAGCTCGAGGAGGTGAAC CATGATCTGACCATGTACATCTCCGGCCAGGAGAAGCTCAAGGAGATGGAGCGTGAGGGCATGCTGGGTGAGGGG GAAGCGGTTGATGGGACCGTGGGCGTGCCTGAGAGTCGAAGCCGGCGGAGACAGCGCAAGCGG |
Transcript | >Ophio5|4878 ATGGTGACGCCTCATTACTTTTACCATCTGAAGTTCGAGCTCTATCCCACCCCGAACCCCGAGAGCGAGGAATCG TCGACGGAGCTGGTGGCAGGCATCTGGCTCCCGCCGCCAGAGGCCAGCGCCTTTGATCGTCTGCCGTCACATCCG AGGCGCGAGCGGGTGGTGCGCGACGATAGGAGGGAAGCTCGCGAGGGGACAGCGAGGGGCGACAGCGACGTCGTT TACGGGAGCCATTTCAAATTGAGCGTCATCGACTGCGGCAGCGGAAGCGGTCCTCGCATCGAGGAGGAGCGACAC AGACGGCAGAGGACGTCATCGAGCGCAGCAGCCCCAGCGCCGCACAAGGCCGTACGTGACTGGCGATTCGGGCGC GTGAGCATCGAGACGTCCGATCCGACGACGGCGGCGGACGAGATGCCGCCGAGCGAGGCCAGCAAACCGGGCCCT TCGGCAGCGCCGACGCTGGGCCCGTCCTTCGGCGGCGCCGGCACCGCGACCAAAGCCGAATGCCTGCCGCTGGAC ACGAAGCACACGGAGCTGGGCTGGGGCGTCGTCCGTTTCTACCGCGAAGGCAACGAGACGCCGGCGGCGGCCCTC GACGACAGCGAGACGCCGGCCGAAGAGGCCTGTTGCGTGCTGTGCATCCCTGCCGTGCCGGCGTATATGTCGCCG GGCGACTTCATGGGCTTCGTCGGGGACCGCTGGATGGGCGACATCAGCCATTGCCGCATGGTCATGACGTCTAGC ATGAATCGCTATCTCGTTCTGCTCCGGTTTCGGGAGGCGGAGAGGGCCAAGCTGTGGAAGCGTGAGTTTGACGGC AAGGTCTTTAATTCGATAGAGTCCCGAGTTTGCCACGTCGTCATGGTCAAGTCCATCACGTTCGAGACGCCGACG AGGCCACGGCGGAACGATCACCCGGTGGCGACGGCGACGGCGCCGTCGTCTTCGTCGTCGGTCGTCGTCTCGGCT AGCCTCAAGCCTTTTCCGCCCCCGACGCCCAACCTCATCGAGCTGCCGACCTGTCCCGTCTGCCTGGAGAGGATG GACGAGACCAACGGGCTGATGACGATACCGTGCTCTCACGTCTTTCACTGCACCTGTCTACAGAACTGGAGAGGA GCCGGCTGCCCGGTCTGCCGCTTCACAAATGCCTCGTCTCAGGCGGGCGCCGACGACACCGACGACCCCAACTCG CGGTCTTTCGGGGCGCCAGTCTCGAACCTCTGCAGCGTATGCGACTGCGCCGACGACCTCTGGATCTGCCTGATC TGCGGCCACGTCGGCTGCGGTCGATACAAGGGCGGCCACGCCAAGGACCATTGGAAAGAGACAGCACACTGCTTC GCGCTAGAGTTAGAGACCCAACACGTCTGGGACTACGCGGGAGACATGTGGGTGCATCGCCTGATCCGCGACAAG GGTGACGGCAAGGTTGTCGAGCTGCCGGGTCGAGGGAGCCCCCATGGCGGGCAGGGACAGCAGCAGGCACGCGAG GACGACGGAGACGTAGTGCCGCGAGCCAAGCTGGAAAACATCGGGCTCGAGTACACACACCTGATTACGAGTCAG CTGGAGTCGCAGCGAGCCTACTACGAAGACATGATCAGCAAGGCAGCCGACAAGGCGGCTACGGCGGCGGCGGCG GCAGAAAGCAGCACGGCGCGAACGGCCGAGCTGGCGGAACGACTGGCTCGTCTGGAAGAGCAATACAAGACGGTC AGCACCGAGACGGTACCGCAGCTGGAGCGCGACCTGGAACGGCAGCGATGCAAGGCCGAGCGGGCGGAGAAGCTG GCACGCAGTCTAAGCCAGTCGGTACAGGAGGAGAAGCGAATCAACGAGGGGCTGATGCAGCGCATCGCTCACCTC GACTCCTCGGCCGAGGCGGCTCGCGGGGAGCTGGAGACGCTGCGCAAGGACAAGGCCGAGCTCGAGGAGGTGAAC CATGATCTGACCATGTACATCTCCGGCCAGGAGAAGCTCAAGGAGATGGAGCGTGAGGGCATGCTGGGTGAGGGG GAAGCGGTTGATGGGACCGTGGGCGTGCCTGAGAGTCGAAGCCGGCGGAGACAGCGCAAGCGGTGA |
Gene | >Ophio5|4878 ATGGTGACGCCTCATTACTTTTACCATCTGAAGTTCGAGCTCTATCCCACCCCGAACCCCGAGAGCGAGGAATCG TCGACGGAGCTGGTGGCAGGCATCTGGCTCCCGCCGCCAGAGGCCAGCGCCTTTGATCGTCTGCCGTCACATCCG AGGCGCGAGCGGGTGGTGCGCGACGATAGGAGGGAAGCTCGCGAGGGGACAGCGAGGGGCGACAGCGACGTCGTT TACGGGAGCCATTTCAAATTGAGCGTCATCGACTGCGGCAGCGGAAGCGGTCCTCGCATCGAGGAGGAGCGACAC AGACGGCAGAGGACGTCATCGAGCGCAGCAGCCCCAGCGCCGCACAAGGCCGTACGTGACTGGCGATTCGGGCGC GTGAGCATCGAGACGTCCGATCCGACGACGGCGGCGGACGAGATGCCGCCGAGCGAGGCCAGCAAACCGGGCCCT TCGGCAGCGCCGACGCTGGGCCCGTCCTTCGGCGGCGCCGGCACCGCGACCAAAGCCGAATGCCTGCCGCTGGAC ACGAAGCACACGGAGCTGGGCTGGGGCGTCGTCCGTTTCTACCGCGAAGGCAACGAGACGCCGGCGGCGGCCCTC GACGACAGCGAGACGCCGGCCGAAGAGGCCTGTTGCGTGCTGTGCATCCCTGCCGTGCCGGCGTATATGTCGCCG GGCGACTTCATGGGCTTCGTCGGGGACCGCTGGATGGGCGACATCAGCCATTGCCGCATGGTCATGACGTCTAGC ATGAATCGCTATCTCGTTCTGCTCCGGTTTCGGGAGGCGGAGAGGGCCAAGCTGTGGAAGCGTGAGTTTGACGGC AAGGTCTTTAATTCGATAGAGGTGAGTCTATCAAGGTGCAATGCCTTTCATTCAATCCATGCTTTGCGTCGCGCT GACGAGCTTCGCAGTCCCGAGTTTGCCACGTCGTCATGGTCAAGTCCATCACGTTCGAGACGCCGACGAGGCCAC GGCGGAACGATCACCCGGTGGCGACGGCGACGGCGCCGTCGTCTTCGTCGTCGGTCGTCGTCTCGGCTAGCCTCA AGCCTTTTCCGCCCCCGACGCCCAACCTCATCGAGCTGCCGACCTGTCCCGTCTGCCTGGAGAGGATGGACGAGA CCAACGGGCTGATGACGATACCGTGCTCTCACGTCTTTCACTGCACCTGTCTACAGAACTGGAGAGGAGCCGGCT GCCCGGTCTGCCGCTTCACAAATGCCTCGTCTCAGGCGGGCGCCGACGACACCGACGACCCCAACTCGCGGTCTT TCGGGGCGCCAGTCTCGAACCTCTGCAGCGTATGCGACTGCGCCGACGACCTCTGGATCTGCCTGATCTGCGGCC ACGTCGGCTGCGGTCGATACAAGGGCGGCCACGCCAAGGACCATTGGAAAGAGACAGCACACTGCTTCGCGCTAG AGTTAGAGACCCAACACGTCTGGGACTACGCGGGAGACATGTGGGTGCATCGCCTGATCCGCGACAAGGGTGACG GCAAGGTTGTCGAGCTGCCGGGTCGAGGGAGCCCCCATGGCGGGCAGGGACAGCAGCAGGCACGCGAGGACGACG GAGACGTAGTGCCGCGAGCCAAGCTGGAAAACATCGGGCTCGAGTACACACACCTGATTACGAGTCAGCTGGAGT CGCAGCGAGCCTACTACGAAGACATGATCAGCAAGGCAGCCGACAAGGCGGCTACGGCGGCGGCGGCGGCAGAAA GCAGCACGGCGCGAACGGCCGAGCTGGCGGAACGACTGGCTCGTCTGGAAGAGCAATACAAGACGGTCAGCACCG AGACGGTACCGCAGCTGGAGCGCGACCTGGAACGGCAGCGATGCAAGGCCGAGCGGGCGGAGAAGCTGGCACGCA GTCTAAGCCAGTCGGTACAGGAGGAGAAGCGAATCAACGAGGGGCTGATGCAGCGCATCGCTCACCTCGACTCCT CGGCCGAGGCGGCTCGCGGGGAGCTGGAGACGCTGCGCAAGGACAAGGCCGAGCTCGAGGAGGTGAACCATGATC TGACCATGTACATCTCCGGCCAGGAGAAGCTCAAGGAGATGGAGCGTGAGGGCATGCTGGGTGAGGGGGAAGCGG TTGATGGGACCGTGGGCGTGCCTGAGAGTCGAAGCCGGCGGAGACAGCGCAAGCGGTGA |