Protein ID | Ophio5|4839 |
Gene name | |
Location | scaffold_39:567..2309 |
Strand | + |
Gene length (bp) | 1742 |
Transcript length (bp) | 1578 |
Coding sequence length (bp) | 1575 |
Protein length (aa) | 525 |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 11 | 0.45 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 151 | 173 | 22 |
2 | 234 | 256 | 22 |
3 | 278 | 300 | 22 |
4 | 321 | 343 | 22 |
5 | 348 | 367 | 19 |
Expression values
Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
---|---|---|---|---|
SC16a | Pure fungal culture | 42.65 | 23.04 | 62.27 |
CcL | In ants, during behavior modification | 31.12 | 15.39 | 46.86 |
CcD | In ants, recently dead | 27.20 | 13.65 | 40.74 |
Differential expression
Label1 | Label2 | Q-value | Significant difference |
---|---|---|---|
SC16a | CcL | 0.196913 | no |
SC16a | CcD | 0.054298 | no |
CcL | CcD | 0.630189 | no |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ophio5|4839 MRKSGVCISRPSLLVKKKQGPPARLGPHPAMTLQEQTCIHDDRCAPSTTSDDGGAVPSRDTAVVKEEDAVVAVVD DANKDEDEDGEGEEDDGGQDDKRCRVRLVRSSPSNSFRLAPASRLENNLPFAVGLLELANAGDFAANVWNQIPVP VYAMVLMALGGSLALIMSLVALFDVRRAWSNVQFLRRQRRRLRLRQQSRRRQQQQQQQQQQQRLDAALRAVSFRE LWSEIINRLAMDILMGAGALLIAAGTFMAMGGDDERVWNASNILSGYLGNTPLALFALVNSSWALFLAATAQSHV RATRRRGMAPAAELVKRRSRNVQVFCVINGTAAVVGGVGSMLTATKWWAYVLLAPVVVSSVFCNLWWRRRVGYTR ARGRVSAETLESDLEYAAWAEVTLREKPSPSTLTTKTYLSRLIASPTSLSDVLGWLQRHDLFPDMCVFALADASI REALVLSTPDELDVGIAELLALPPALHPRLLIAADACVARIGRKHFRHRERYLAELLGTYCTVKTRAEDEEVGEK |
Coding | >Ophio5|4839 ATGAGAAAGTCTGGCGTATGTATATCTCGTCCTTCTCTACTCGTAAAGAAGAAGCAGGGTCCCCCCGCCCGCCTC GGGCCCCATCCGGCCATGACGCTACAGGAGCAGACATGCATCCACGACGACCGCTGCGCCCCCTCGACGACCAGC GACGACGGGGGGGCTGTGCCGAGCCGAGACACAGCCGTTGTGAAGGAGGAGGATGCCGTTGTTGCCGTGGTCGAT GATGCCAATAAAGACGAAGACGAAGACGGAGAAGGAGAAGAAGATGACGGAGGCCAAGATGATAAAAGATGTCGC GTTCGACTTGTCCGGTCTTCCCCTTCCAATTCCTTCCGTCTCGCGCCCGCTTCCCGACTCGAAAACAACCTCCCC TTTGCCGTCGGTCTTCTCGAGCTCGCAAACGCAGGAGACTTCGCGGCGAACGTATGGAACCAAATCCCCGTCCCC GTCTACGCCATGGTCTTAATGGCCCTCGGCGGCAGCCTCGCCTTGATCATGAGTCTCGTCGCACTATTCGACGTA CGACGGGCATGGAGCAACGTACAATTCCTACGACGACAACGACGTCGACTCCGACTCCGCCAACAATCACGACGA CGACAACAACAACAACAACAACAACAACAACAACAGCGTCTCGACGCCGCGCTCCGAGCCGTATCGTTTCGCGAA CTGTGGAGCGAAATCATCAACCGACTCGCCATGGATATCCTCATGGGTGCCGGCGCGCTACTCATCGCGGCCGGA ACATTCATGGCCATGGGCGGCGATGACGAACGCGTCTGGAACGCCAGTAATATCCTATCCGGCTATTTGGGAAAC ACACCTCTTGCCCTCTTCGCCCTCGTCAACTCGTCCTGGGCGCTATTCCTGGCCGCTACCGCGCAGAGTCATGTT CGGGCCACGAGACGGAGGGGAATGGCGCCGGCGGCTGAGCTGGTCAAGAGGAGGAGTCGGAATGTGCAGGTTTTT TGCGTCATCAATGGCACCGCTGCTGTTGTCGGTGGCGTCGGTTCCATGTTGACGGCGACCAAGTGGTGGGCCTAT GTTCTTCTCGCCCCCGTCGTCGTCTCATCCGTCTTTTGCAATCTTTGGTGGAGGAGACGAGTCGGTTATACCCGA GCCCGAGGTCGCGTCTCAGCCGAAACACTCGAATCCGATCTCGAATACGCCGCCTGGGCAGAAGTTACCCTCCGC GAGAAACCATCACCATCAACATTAACAACAAAAACATATCTATCCCGCCTCATCGCGTCACCAACTTCCCTCTCC GACGTCCTTGGTTGGCTTCAACGCCACGACCTCTTTCCAGACATGTGCGTCTTCGCCCTCGCCGACGCCTCCATC AGAGAAGCCCTCGTCCTTTCAACACCGGATGAGCTCGACGTCGGTATCGCCGAGTTGTTGGCTCTGCCTCCTGCG CTGCATCCGCGTTTGCTGATAGCAGCCGACGCGTGTGTTGCGCGTATAGGCCGGAAGCATTTTCGTCATCGGGAG AGATATCTTGCTGAGTTACTTGGCACCTATTGCACTGTCAAGACGAGGGCGGAGGATGAGGAGGTTGGAGAGAAA |
Transcript | >Ophio5|4839 ATGAGAAAGTCTGGCGTATGTATATCTCGTCCTTCTCTACTCGTAAAGAAGAAGCAGGGTCCCCCCGCCCGCCTC GGGCCCCATCCGGCCATGACGCTACAGGAGCAGACATGCATCCACGACGACCGCTGCGCCCCCTCGACGACCAGC GACGACGGGGGGGCTGTGCCGAGCCGAGACACAGCCGTTGTGAAGGAGGAGGATGCCGTTGTTGCCGTGGTCGAT GATGCCAATAAAGACGAAGACGAAGACGGAGAAGGAGAAGAAGATGACGGAGGCCAAGATGATAAAAGATGTCGC GTTCGACTTGTCCGGTCTTCCCCTTCCAATTCCTTCCGTCTCGCGCCCGCTTCCCGACTCGAAAACAACCTCCCC TTTGCCGTCGGTCTTCTCGAGCTCGCAAACGCAGGAGACTTCGCGGCGAACGTATGGAACCAAATCCCCGTCCCC GTCTACGCCATGGTCTTAATGGCCCTCGGCGGCAGCCTCGCCTTGATCATGAGTCTCGTCGCACTATTCGACGTA CGACGGGCATGGAGCAACGTACAATTCCTACGACGACAACGACGTCGACTCCGACTCCGCCAACAATCACGACGA CGACAACAACAACAACAACAACAACAACAACAACAGCGTCTCGACGCCGCGCTCCGAGCCGTATCGTTTCGCGAA CTGTGGAGCGAAATCATCAACCGACTCGCCATGGATATCCTCATGGGTGCCGGCGCGCTACTCATCGCGGCCGGA ACATTCATGGCCATGGGCGGCGATGACGAACGCGTCTGGAACGCCAGTAATATCCTATCCGGCTATTTGGGAAAC ACACCTCTTGCCCTCTTCGCCCTCGTCAACTCGTCCTGGGCGCTATTCCTGGCCGCTACCGCGCAGAGTCATGTT CGGGCCACGAGACGGAGGGGAATGGCGCCGGCGGCTGAGCTGGTCAAGAGGAGGAGTCGGAATGTGCAGGTTTTT TGCGTCATCAATGGCACCGCTGCTGTTGTCGGTGGCGTCGGTTCCATGTTGACGGCGACCAAGTGGTGGGCCTAT GTTCTTCTCGCCCCCGTCGTCGTCTCATCCGTCTTTTGCAATCTTTGGTGGAGGAGACGAGTCGGTTATACCCGA GCCCGAGGTCGCGTCTCAGCCGAAACACTCGAATCCGATCTCGAATACGCCGCCTGGGCAGAAGTTACCCTCCGC GAGAAACCATCACCATCAACATTAACAACAAAAACATATCTATCCCGCCTCATCGCGTCACCAACTTCCCTCTCC GACGTCCTTGGTTGGCTTCAACGCCACGACCTCTTTCCAGACATGTGCGTCTTCGCCCTCGCCGACGCCTCCATC AGAGAAGCCCTCGTCCTTTCAACACCGGATGAGCTCGACGTCGGTATCGCCGAGTTGTTGGCTCTGCCTCCTGCG CTGCATCCGCGTTTGCTGATAGCAGCCGACGCGTGTGTTGCGCGTATAGGCCGGAAGCATTTTCGTCATCGGGAG AGATATCTTGCTGAGTTACTTGGCACCTATTGCACTGTCAAGACGAGGGCGGAGGATGAGGAGGTTGGAGAGAAA TAG |
Gene | >Ophio5|4839 ATGAGAAAGTCTGGCGTATGTATATCTCGTCCTTCTCTACTCGTAGTACGTATCTCGCCCATTCTTCTCGTCGTC ATCTCTGCCAAGAAAATTCAAGACTTGGCGAAAAGAAAAAATAAAATAAAAATCCTTCTTTAATTGGGCCAAAAC CCTAAACAAAAAGGGCTTCAATATCGATAATCGAGAACCAGCAACTGATTCCGACATAGAAGAAGAAGCAGGGTC CCCCCGCCCGCCTCGGGCCCCATCCGGCCATGACGCTACAGGAGCAGACATGCATCCACGACGACCGCTGCGCCC CCTCGACGACCAGCGACGACGGGGGGGCTGTGCCGAGCCGAGACACAGCCGTTGTGAAGGAGGAGGATGCCGTTG TTGCCGTGGTCGATGATGCCAATAAAGACGAAGACGAAGACGGAGAAGGAGAAGAAGATGACGGAGGCCAAGATG ATAAAAGATGTCGCGTTCGACTTGTCCGGTCTTCCCCTTCCAATTCCTTCCGTCTCGCGCCCGCTTCCCGACTCG AAAACAACCTCCCCTTTGCCGTCGGTCTTCTCGAGCTCGCAAACGCAGGAGACTTCGCGGCGAACGTATGGAACC AAATCCCCGTCCCCGTCTACGCCATGGTCTTAATGGCCCTCGGCGGCAGCCTCGCCTTGATCATGAGTCTCGTCG CACTATTCGACGTACGACGGGCATGGAGCAACGTACAATTCCTACGACGACAACGACGTCGACTCCGACTCCGCC AACAATCACGACGACGACAACAACAACAACAACAACAACAACAACAACAGCGTCTCGACGCCGCGCTCCGAGCCG TATCGTTTCGCGAACTGTGGAGCGAAATCATCAACCGACTCGCCATGGATATCCTCATGGGTGCCGGCGCGCTAC TCATCGCGGCCGGAACATTCATGGCCATGGGCGGCGATGACGAACGCGTCTGGAACGCCAGTAATATCCTATCCG GCTATTTGGGAAACACACCTCTTGCCCTCTTCGCCCTCGTCAACTCGTCCTGGGCGCTATTCCTGGCCGCTACCG CGCAGAGTCATGTTCGGGCCACGAGACGGAGGGGAATGGCGCCGGCGGCTGAGCTGGTCAAGAGGAGGAGTCGGA ATGTGCAGGTTTTTTGCGTCATCAATGGCACCGCTGCTGTTGTCGGTGGCGTCGGTTCCATGTTGACGGCGACCA AGTGGTGGGCCTATGTTCTTCTCGCCCCCGTCGTCGTCTCATCCGTCTTTTGCAATCTTTGGTGGAGGAGACGAG TCGGTTATACCCGAGCCCGAGGTCGCGTCTCAGCCGAAACACTCGAATCCGATCTCGAATACGCCGCCTGGGCAG AAGTTACCCTCCGCGAGAAACCATCACCATCAACATTAACAACAAAAACATATCTATCCCGCCTCATCGCGTCAC CAACTTCCCTCTCCGACGTCCTTGGTTGGCTTCAACGCCACGACCTCTTTCCAGACATGTGCGTCTTCGCCCTCG CCGACGCCTCCATCAGAGAAGCCCTCGTCCTTTCAACACCGGATGAGCTCGACGTCGGTATCGCCGAGTTGTTGG CTCTGCCTCCTGCGCTGCATCCGCGTTTGCTGATAGCAGCCGACGCGTGTGTTGCGCGTATAGGCCGGAAGCATT TTCGTCATCGGGAGAGATATCTTGCTGAGTTACTTGGCACCTATTGCACTGTCAAGACGAGGGCGGAGGATGAGG AGGTTGGAGAGAAATAG |