© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|4790 |
| Gene name | |
| Location | scaffold_382:19287..19953 |
| Strand | - |
| Gene length (bp) | 666 |
| Transcript length (bp) | 585 |
| Coding sequence length (bp) | 582 |
| Protein length (aa) | 194 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07452 | CHRD | CHRD domain | 3.2E-12 | 62 | 183 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 17 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 0.07 | 0.0 | 0.60 |
| CcL | In ants, during behavior modification | 0.22 | 0.0 | 0.75 |
| CcD | In ants, recently dead | 0.00 | 0.0 | 0.00 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 1.0 | no |
| SC16a | CcD | 1.0 | no |
| CcL | CcD | 1.0 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|4790 MKTVLFGLVATGVAAAAAPEPMMTDCMLKDAGSPFKFTSTFHVDAGPGEVVDAMNNFTGGLQGATGHFHFGINSD QNFICYNISVDGFRGNYSSPAKTATHIHEGAVGKSGPPRIVFPNPEGPEGQHRVTMGCIQGPFVTGVMTNGTDSG RGFHVRQIEENPDGFFADLHSTEAVPGAVRGQLQKQEVCTVTWM |
| Coding | >Ophio5|4790 ATGAAGACAGTTCTGTTCGGTCTCGTCGCTACTGGTGTTGCTGCTGCGGCGGCGCCGGAGCCGATGATGACCGAC TGCATGCTGAAAGACGCCGGGTCGCCCTTCAAGTTCACCTCGACCTTCCACGTTGACGCTGGACCGGGCGAGGTT GTCGACGCTATGAATAACTTTACCGGTGGGCTGCAGGGTGCCACGGGCCATTTTCACTTTGGCATCAACTCGGAT CAGAACTTCATCTGCTATAACATCAGTGTCGACGGCTTCCGGGGCAACTACTCGTCTCCGGCCAAGACGGCTACG CACATCCACGAGGGCGCCGTTGGGAAATCGGGTCCTCCTCGAATCGTCTTCCCTAACCCTGAAGGTCCCGAGGGC CAGCATCGGGTCACCATGGGCTGTATCCAAGGACCCTTCGTCACGGGCGTCATGACCAACGGAACCGATTCCGGA CGGGGCTTCCACGTCAGGCAGATCGAGGAGAACCCGGATGGGTTTTTCGCCGATTTGCATTCGACCGAGGCTGTT CCCGGTGCGGTTCGTGGTCAGCTTCAGAAGCAGGAGGTTTGCACTGTTACCTGGATG |
| Transcript | >Ophio5|4790 ATGAAGACAGTTCTGTTCGGTCTCGTCGCTACTGGTGTTGCTGCTGCGGCGGCGCCGGAGCCGATGATGACCGAC TGCATGCTGAAAGACGCCGGGTCGCCCTTCAAGTTCACCTCGACCTTCCACGTTGACGCTGGACCGGGCGAGGTT GTCGACGCTATGAATAACTTTACCGGTGGGCTGCAGGGTGCCACGGGCCATTTTCACTTTGGCATCAACTCGGAT CAGAACTTCATCTGCTATAACATCAGTGTCGACGGCTTCCGGGGCAACTACTCGTCTCCGGCCAAGACGGCTACG CACATCCACGAGGGCGCCGTTGGGAAATCGGGTCCTCCTCGAATCGTCTTCCCTAACCCTGAAGGTCCCGAGGGC CAGCATCGGGTCACCATGGGCTGTATCCAAGGACCCTTCGTCACGGGCGTCATGACCAACGGAACCGATTCCGGA CGGGGCTTCCACGTCAGGCAGATCGAGGAGAACCCGGATGGGTTTTTCGCCGATTTGCATTCGACCGAGGCTGTT CCCGGTGCGGTTCGTGGTCAGCTTCAGAAGCAGGAGGTTTGCACTGTTACCTGGATGTAA |
| Gene | >Ophio5|4790 ATGAAGACAGTTCTGTTCGGTCTCGTCGCTACTGGTGTTGCTGCTGCGGCGGCGCCGGAGCCGATGATGACCGAC TGCATGCTGAAAGACGCCGGGTCGCCCTTCAAGTTCACCTCGACCTTCCACGTTGACGCTGGACCGGGCGAGGTT GTCGACGCTATGAATAACTTTACCGGTGGGCTGCAGGGTGCCACGGGCCATTTTCACTTTGGCATCAACTCGGAT CAGAACTTCATCTGCTATAACATCAGTGTCGACGGCTTCCGGGGCAACTACTCGTCTCCGGCCAAGACGGCTACG CACATCCACGAGGGCGCCGTTGGGAAATCGGGTCCTCCTCGGTACGTGACAACATTCTTCCCCCCCAAGATGTGA TCATCCTGTTTGTTTCTAATCATGAAAAAAAAAAACGCATCATGTAGAATCGTCTTCCCTAACCCTGAAGGTCCC GAGGGCCAGCATCGGGTCACCATGGGCTGTATCCAAGGACCCTTCGTCACGGGCGTCATGACCAACGGAACCGAT TCCGGACGGGGCTTCCACGTCAGGCAGATCGAGGAGAACCCGGATGGGTTTTTCGCCGATTTGCATTCGACCGAG GCTGTTCCCGGTGCGGTTCGTGGTCAGCTTCAGAAGCAGGAGGTTTGCACTGTTACCTGGATGTAA |