Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophio5\|4742
Gene name
Location	scaffold_38:15161..16053
Strand	+
Gene length (bp)	892
Transcript length (bp)	765
Coding sequence length (bp)	762
Protein length (aa)	254

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF08590	DUF1771	Domain of unknown function (DUF1771)	4.0E-25	27	89
PF01713	Smr	Smr domain	6.3E-11	99	155

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q9UTP4\|YLL3_SCHPO	Smr domain-containing protein C11H11.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC11H11.03c PE=3 SV=1	24	254	4.0E-40
sp\|Q08954\|YP199_YEAST	Smr domain-containing protein YPL199C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YPL199C PE=1 SV=1	19	175	1.0E-25
sp\|Q86UW6\|N4BP2_HUMAN	NEDD4-binding protein 2 OS=Homo sapiens GN=N4BP2 PE=1 SV=2	26	149	3.0E-14
sp\|O64843\|CID7_ARATH	Polyadenylate-binding protein-interacting protein 7 OS=Arabidopsis thaliana GN=CID7 PE=1 SV=1	20	171	2.0E-11

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 17	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophio5\|4742 MAAIPLTRLGGRALHAGNNEEVEQQFDNLRGLARAEAEKRNSCFDRSRQAYKSGDGAGAKELSNQGKMHDAKMDE YNRQASDYIFRENNAPGRVEPDAIDLHGQFVEEAERILEQRIRADQARGQTHLHVIVGKGNHSAGHVQKLKPKVE ELCRELGLRYQTEENAGRIFINLQGGEPVPPQHYGGHQQQQQHHPQPHHPQPHHPHHQQQQHQQQQQHQQQQQQQ QQDEGMGQFVEKAIPRLIRKLEKACCAVM
Coding	>Ophio5\|4742 ATGGCCGCCATCCCCTTGACTCGATTAGGCGGTCGAGCGCTTCATGCCGGCAACAATGAAGAGGTCGAGCAGCAA TTCGACAACCTTCGTGGCCTGGCGCGCGCCGAAGCCGAGAAGCGAAACTCGTGCTTTGATCGGTCTCGTCAGGCC TACAAGTCGGGAGATGGCGCCGGTGCCAAAGAGCTCTCGAATCAGGGCAAGATGCACGACGCCAAGATGGACGAG TACAATCGCCAGGCCTCCGACTACATCTTCCGCGAGAACAATGCCCCGGGCCGGGTCGAGCCGGACGCCATTGAC CTTCACGGCCAGTTCGTCGAAGAGGCCGAGCGCATTCTCGAGCAGCGTATCCGCGCCGATCAAGCCCGTGGCCAG ACGCATCTACATGTCATTGTCGGCAAGGGGAACCATTCGGCCGGCCATGTCCAGAAGCTGAAACCAAAGGTCGAG GAACTGTGTCGCGAATTGGGGCTCAGGTATCAGACGGAGGAGAACGCGGGCAGGATATTCATCAATCTTCAAGGA GGGGAACCGGTGCCTCCTCAACATTACGGAGGGCATCAGCAACAGCAGCAGCATCACCCACAACCGCATCACCCA CAACCGCATCACCCACACCATCAACAGCAGCAACATCAGCAGCAGCAGCAACATCAGCAGCAGCAGCAGCAGCAG CAGCAGGACGAGGGCATGGGGCAGTTCGTGGAAAAGGCGATCCCGCGCCTCATCCGCAAGCTGGAAAAGGCCTGC TGCGCTGTCATG
Transcript	>Ophio5\|4742 ATGGCCGCCATCCCCTTGACTCGATTAGGCGGTCGAGCGCTTCATGCCGGCAACAATGAAGAGGTCGAGCAGCAA TTCGACAACCTTCGTGGCCTGGCGCGCGCCGAAGCCGAGAAGCGAAACTCGTGCTTTGATCGGTCTCGTCAGGCC TACAAGTCGGGAGATGGCGCCGGTGCCAAAGAGCTCTCGAATCAGGGCAAGATGCACGACGCCAAGATGGACGAG TACAATCGCCAGGCCTCCGACTACATCTTCCGCGAGAACAATGCCCCGGGCCGGGTCGAGCCGGACGCCATTGAC CTTCACGGCCAGTTCGTCGAAGAGGCCGAGCGCATTCTCGAGCAGCGTATCCGCGCCGATCAAGCCCGTGGCCAG ACGCATCTACATGTCATTGTCGGCAAGGGGAACCATTCGGCCGGCCATGTCCAGAAGCTGAAACCAAAGGTCGAG GAACTGTGTCGCGAATTGGGGCTCAGGTATCAGACGGAGGAGAACGCGGGCAGGATATTCATCAATCTTCAAGGA GGGGAACCGGTGCCTCCTCAACATTACGGAGGGCATCAGCAACAGCAGCAGCATCACCCACAACCGCATCACCCA CAACCGCATCACCCACACCATCAACAGCAGCAACATCAGCAGCAGCAGCAACATCAGCAGCAGCAGCAGCAGCAG CAGCAGGACGAGGGCATGGGGCAGTTCGTGGAAAAGGCGATCCCGCGCCTCATCCGCAAGCTGGAAAAGGCCTGC TGCGCTGTCATGTAG
Gene	>Ophio5\|4742 ATGGCCGCCATCCCCTTGACTCGATTAGGCGGTCGAGGTACGGCTATTTTGGTTATTGTCGTCGCGGCTCATGAC TGACGCCATCCGCCGTCGCAAACCAGCGCTTCATGCCGGCAACAATGAAGAGGTCGAGCAGCAATTCGACAACCT TCGTGGCCTGGCGCGCGCCGAAGCCGAGAAGCGAAACTCGTGCTTTGATCGGGTACGACGATGCCCTCGCCCAGC ATGCCTACCGTCTCGTACCGACTGACCATGTCGCACTTAGTCTCGTCAGGCCTACAAGTCGGGAGATGGCGCCGG TGCCAAAGAGCTCTCGAATCAGGGCAAGATGCACGACGCCAAGATGGACGAGTACAATCGCCAGGCCTCCGACTA CATCTTCCGCGAGAACAATGCCCCGGGCCGGGTCGAGCCGGACGCCATTGACCTTCACGGCCAGTTCGTCGAAGA GGCCGAGCGCATTCTCGAGCAGCGTATCCGCGCCGATCAAGCCCGTGGCCAGACGCATCTACATGTCATTGTCGG CAAGGGGAACCATTCGGCCGGCCATGTCCAGAAGCTGAAACCAAAGGTCGAGGAACTGTGTCGCGAATTGGGGCT CAGGTATCAGACGGAGGAGAACGCGGGCAGGATATTCATCAATCTTCAAGGAGGGGAACCGGTGCCTCCTCAACA TTACGGAGGGCATCAGCAACAGCAGCAGCATCACCCACAACCGCATCACCCACAACCGCATCACCCACACCATCA ACAGCAGCAACATCAGCAGCAGCAGCAACATCAGCAGCAGCAGCAGCAGCAGCAGCAGGACGAGGGCATGGGGCA GTTCGTGGAAAAGGCGATCCCGCGCCTCATCCGCAAGCTGGAAAAGGCCTGCTGCGCTGTCATGTAG

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