Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|4742
Gene name
Locationscaffold_38:15161..16053
Strand+
Gene length (bp)892
Transcript length (bp)765
Coding sequence length (bp)762
Protein length (aa) 254

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF08590 DUF1771 Domain of unknown function (DUF1771) 4.0E-25 27 89
PF01713 Smr Smr domain 6.3E-11 99 155

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|Q9UTP4|YLL3_SCHPO Smr domain-containing protein C11H11.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC11H11.03c PE=3 SV=1 24 254 4.0E-40
sp|Q08954|YP199_YEAST Smr domain-containing protein YPL199C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YPL199C PE=1 SV=1 19 175 1.0E-25
sp|Q86UW6|N4BP2_HUMAN NEDD4-binding protein 2 OS=Homo sapiens GN=N4BP2 PE=1 SV=2 26 149 3.0E-14
sp|O64843|CID7_ARATH Polyadenylate-binding protein-interacting protein 7 OS=Arabidopsis thaliana GN=CID7 PE=1 SV=1 20 171 2.0E-11

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 17 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|4742
MAAIPLTRLGGRALHAGNNEEVEQQFDNLRGLARAEAEKRNSCFDRSRQAYKSGDGAGAKELSNQGKMHDAKMDE
YNRQASDYIFRENNAPGRVEPDAIDLHGQFVEEAERILEQRIRADQARGQTHLHVIVGKGNHSAGHVQKLKPKVE
ELCRELGLRYQTEENAGRIFINLQGGEPVPPQHYGGHQQQQQHHPQPHHPQPHHPHHQQQQHQQQQQHQQQQQQQ
QQDEGMGQFVEKAIPRLIRKLEKACCAVM
Coding >Ophio5|4742
ATGGCCGCCATCCCCTTGACTCGATTAGGCGGTCGAGCGCTTCATGCCGGCAACAATGAAGAGGTCGAGCAGCAA
TTCGACAACCTTCGTGGCCTGGCGCGCGCCGAAGCCGAGAAGCGAAACTCGTGCTTTGATCGGTCTCGTCAGGCC
TACAAGTCGGGAGATGGCGCCGGTGCCAAAGAGCTCTCGAATCAGGGCAAGATGCACGACGCCAAGATGGACGAG
TACAATCGCCAGGCCTCCGACTACATCTTCCGCGAGAACAATGCCCCGGGCCGGGTCGAGCCGGACGCCATTGAC
CTTCACGGCCAGTTCGTCGAAGAGGCCGAGCGCATTCTCGAGCAGCGTATCCGCGCCGATCAAGCCCGTGGCCAG
ACGCATCTACATGTCATTGTCGGCAAGGGGAACCATTCGGCCGGCCATGTCCAGAAGCTGAAACCAAAGGTCGAG
GAACTGTGTCGCGAATTGGGGCTCAGGTATCAGACGGAGGAGAACGCGGGCAGGATATTCATCAATCTTCAAGGA
GGGGAACCGGTGCCTCCTCAACATTACGGAGGGCATCAGCAACAGCAGCAGCATCACCCACAACCGCATCACCCA
CAACCGCATCACCCACACCATCAACAGCAGCAACATCAGCAGCAGCAGCAACATCAGCAGCAGCAGCAGCAGCAG
CAGCAGGACGAGGGCATGGGGCAGTTCGTGGAAAAGGCGATCCCGCGCCTCATCCGCAAGCTGGAAAAGGCCTGC
TGCGCTGTCATG
Transcript >Ophio5|4742
ATGGCCGCCATCCCCTTGACTCGATTAGGCGGTCGAGCGCTTCATGCCGGCAACAATGAAGAGGTCGAGCAGCAA
TTCGACAACCTTCGTGGCCTGGCGCGCGCCGAAGCCGAGAAGCGAAACTCGTGCTTTGATCGGTCTCGTCAGGCC
TACAAGTCGGGAGATGGCGCCGGTGCCAAAGAGCTCTCGAATCAGGGCAAGATGCACGACGCCAAGATGGACGAG
TACAATCGCCAGGCCTCCGACTACATCTTCCGCGAGAACAATGCCCCGGGCCGGGTCGAGCCGGACGCCATTGAC
CTTCACGGCCAGTTCGTCGAAGAGGCCGAGCGCATTCTCGAGCAGCGTATCCGCGCCGATCAAGCCCGTGGCCAG
ACGCATCTACATGTCATTGTCGGCAAGGGGAACCATTCGGCCGGCCATGTCCAGAAGCTGAAACCAAAGGTCGAG
GAACTGTGTCGCGAATTGGGGCTCAGGTATCAGACGGAGGAGAACGCGGGCAGGATATTCATCAATCTTCAAGGA
GGGGAACCGGTGCCTCCTCAACATTACGGAGGGCATCAGCAACAGCAGCAGCATCACCCACAACCGCATCACCCA
CAACCGCATCACCCACACCATCAACAGCAGCAACATCAGCAGCAGCAGCAACATCAGCAGCAGCAGCAGCAGCAG
CAGCAGGACGAGGGCATGGGGCAGTTCGTGGAAAAGGCGATCCCGCGCCTCATCCGCAAGCTGGAAAAGGCCTGC
TGCGCTGTCATGTAG
Gene >Ophio5|4742
ATGGCCGCCATCCCCTTGACTCGATTAGGCGGTCGAGGTACGGCTATTTTGGTTATTGTCGTCGCGGCTCATGAC
TGACGCCATCCGCCGTCGCAAACCAGCGCTTCATGCCGGCAACAATGAAGAGGTCGAGCAGCAATTCGACAACCT
TCGTGGCCTGGCGCGCGCCGAAGCCGAGAAGCGAAACTCGTGCTTTGATCGGGTACGACGATGCCCTCGCCCAGC
ATGCCTACCGTCTCGTACCGACTGACCATGTCGCACTTAGTCTCGTCAGGCCTACAAGTCGGGAGATGGCGCCGG
TGCCAAAGAGCTCTCGAATCAGGGCAAGATGCACGACGCCAAGATGGACGAGTACAATCGCCAGGCCTCCGACTA
CATCTTCCGCGAGAACAATGCCCCGGGCCGGGTCGAGCCGGACGCCATTGACCTTCACGGCCAGTTCGTCGAAGA
GGCCGAGCGCATTCTCGAGCAGCGTATCCGCGCCGATCAAGCCCGTGGCCAGACGCATCTACATGTCATTGTCGG
CAAGGGGAACCATTCGGCCGGCCATGTCCAGAAGCTGAAACCAAAGGTCGAGGAACTGTGTCGCGAATTGGGGCT
CAGGTATCAGACGGAGGAGAACGCGGGCAGGATATTCATCAATCTTCAAGGAGGGGAACCGGTGCCTCCTCAACA
TTACGGAGGGCATCAGCAACAGCAGCAGCATCACCCACAACCGCATCACCCACAACCGCATCACCCACACCATCA
ACAGCAGCAACATCAGCAGCAGCAGCAACATCAGCAGCAGCAGCAGCAGCAGCAGCAGGACGAGGGCATGGGGCA
GTTCGTGGAAAAGGCGATCCCGCGCCTCATCCGCAAGCTGGAAAAGGCCTGCTGCGCTGTCATGTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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