© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|4714 |
| Gene name | |
| Location | scaffold_377:2672..5052 |
| Strand | - |
| Gene length (bp) | 2380 |
| Transcript length (bp) | 2115 |
| Coding sequence length (bp) | 2112 |
| Protein length (aa) | 704 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF05024 | Gpi1 | N-acetylglucosaminyl transferase component (Gpi1) | 4.1E-111 | 299 | 574 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O14357|GPI1_SCHPO | N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein gpi1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gpi1 PE=2 SV=1 | 9 | 662 | 6.0E-125 |
| sp|P53306|GPI1_YEAST | Phosphatidylinositol N-acetylglucosaminyltransferase subunit GPI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GPI1 PE=1 SV=1 | 126 | 673 | 7.0E-73 |
| sp|Q9QYT7|PIGQ_MOUSE | Phosphatidylinositol N-acetylglucosaminyltransferase subunit Q OS=Mus musculus GN=Pigq PE=1 SV=3 | 363 | 614 | 9.0E-50 |
| sp|Q9BRB3|PIGQ_HUMAN | Phosphatidylinositol N-acetylglucosaminyltransferase subunit Q OS=Homo sapiens GN=PIGQ PE=1 SV=3 | 337 | 572 | 1.0E-40 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006506 | GPI anchor biosynthetic process | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0006497 | protein lipidation | No |
| GO:0006793 | phosphorus metabolic process | No |
| GO:0046474 | glycerophospholipid biosynthetic process | No |
| GO:0046488 | phosphatidylinositol metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0006650 | glycerophospholipid metabolic process | No |
| GO:0043412 | macromolecule modification | No |
| GO:1901576 | organic substance biosynthetic process | No |
| GO:0006664 | glycolipid metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0008654 | phospholipid biosynthetic process | No |
| GO:0006644 | phospholipid metabolic process | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0044238 | primary metabolic process | No |
| GO:0006796 | phosphate-containing compound metabolic process | No |
| GO:0009247 | glycolipid biosynthetic process | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0008610 | lipid biosynthetic process | No |
| GO:0044255 | cellular lipid metabolic process | No |
| GO:0009058 | biosynthetic process | No |
| GO:0044249 | cellular biosynthetic process | No |
| GO:0006661 | phosphatidylinositol biosynthetic process | No |
| GO:0090407 | organophosphate biosynthetic process | No |
| GO:0045017 | glycerolipid biosynthetic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0046467 | membrane lipid biosynthetic process | No |
| GO:1901135 | carbohydrate derivative metabolic process | No |
| GO:0006643 | membrane lipid metabolic process | No |
| GO:0006505 | GPI anchor metabolic process | No |
| GO:0019637 | organophosphate metabolic process | No |
| GO:1901137 | carbohydrate derivative biosynthetic process | No |
| GO:0036211 | protein modification process | No |
| GO:0006629 | lipid metabolic process | No |
| GO:0005575 | cellular_component | No |
| GO:0019538 | protein metabolic process | No |
| GO:1903509 | liposaccharide metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:0046486 | glycerolipid metabolic process | No |
| GO:0110165 | cellular anatomical entity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 47 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 247 | 269 | 22 |
| 2 | 339 | 361 | 22 |
| 3 | 403 | 425 | 22 |
| 4 | 432 | 452 | 20 |
| 5 | 472 | 489 | 17 |
| 6 | 509 | 531 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 76.80 | 40.92 | 112.69 |
| CcL | In ants, during behavior modification | 69.56 | 36.73 | 102.39 |
| CcD | In ants, recently dead | 62.50 | 33.90 | 91.10 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.710448 | no |
| SC16a | CcD | 0.404819 | no |
| CcL | CcD | 0.688308 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|4714 MVEHDGLMRVFWPTDACGSHRPGVVVGWRNSTLDVFVVAVLDDAHPQDVEFHLRLGSFFRGGPYNPCRIYDVCGH ASMHVLGVSNAPHSDTADPSWVRATTKPPLKLPTIACAKASSVQLILYDRPQPKRMQYISLEPIALALGDKSSRL EDTQVDDEIEQQELRAKAARRKLVEKLKLHTIAHRVPSARDRALPKIVNQVNWSWELERTLQSNVGRLGPRPRRS LSVSERVVESATTMRNYVLRRLWALFTIYLFPVLWRGFCLLLFGHRMAAEVLLLALEFRPKPGGAALKDISATAQ QIEIRLQQFCYWPMQYSTLRQRKMNWASVTTSHPDYIRFYNSLWLVANDVIIGMALGSYIIEHADWVAAQMGDIL RTYAVEALRRSISWLMGWPAGLKLNGELAAFLGDLFLWVIHYWSTCIEALQPVLPRLVWFIGFSSFAGASMPIAV FSDLLSALTMHIHSFYLASARIHHWQLTILLSLFHLFRGKKHNVLRNRIDSCDYDLDQLLVGTIFFTLLSFLLPT VVVFYLNFAVARMVIISIKAGFDTLLSCLNHFPLFALMLRVKDPRRLPGGIRFELRDGPEQKISDNEPPTSVIYL KSIPLSFSAMFHQYFQMAHRIRKHYLSPGVLLRLLTGQFVPPINRKNLYSLQYSMLPAKRATPWEMWRALNMEPQ KKSFPMPPMPSLASGGKRAAGSGRSRSHH |
| Coding | >Ophio5|4714 ATGGTAGAACATGACGGGCTGATGCGAGTCTTCTGGCCGACGGACGCCTGCGGCTCCCATCGGCCGGGCGTCGTC GTGGGGTGGAGGAACTCGACGCTGGACGTGTTCGTCGTTGCCGTTCTCGACGACGCCCACCCTCAGGACGTCGAA TTTCATCTCAGACTCGGCTCTTTCTTCCGCGGTGGCCCCTATAACCCTTGTCGCATCTACGACGTCTGCGGCCAT GCCTCGATGCACGTCTTGGGCGTTTCCAACGCGCCGCACTCGGACACGGCCGACCCGTCCTGGGTCCGAGCGACG ACGAAGCCGCCGTTGAAGCTGCCGACCATCGCATGCGCCAAGGCGTCCAGCGTCCAGCTCATCCTCTACGACAGG CCGCAGCCCAAGCGCATGCAGTACATCTCGCTCGAGCCCATAGCCTTGGCCCTCGGCGACAAGAGCTCCCGTCTC GAGGATACTCAGGTCGACGACGAGATCGAGCAGCAGGAGCTAAGAGCCAAGGCGGCGCGGCGCAAGCTGGTGGAG AAGCTCAAGCTGCACACCATCGCTCATCGCGTGCCCTCTGCCCGGGACAGGGCCTTGCCCAAGATTGTCAATCAG GTCAATTGGTCGTGGGAGCTGGAGCGGACGCTGCAGAGCAACGTCGGCCGGCTCGGCCCGCGACCGAGGCGCAGC CTGAGCGTCTCGGAGAGGGTGGTCGAGTCCGCCACGACGATGCGCAACTATGTCTTGCGCCGGCTGTGGGCTCTC TTCACCATCTACCTGTTCCCGGTTCTGTGGCGCGGCTTCTGCCTGCTCCTCTTCGGCCACCGCATGGCCGCCGAG GTGCTGCTGCTGGCACTCGAGTTCCGCCCCAAGCCGGGGGGCGCCGCGCTCAAGGACATCTCGGCCACGGCCCAG CAGATTGAGATTCGGCTGCAGCAGTTTTGCTATTGGCCCATGCAATACTCGACACTGCGCCAGCGCAAGATGAAT TGGGCGAGTGTCACCACCAGCCATCCCGACTATATTCGTTTCTACAACAGCCTCTGGCTGGTGGCCAACGACGTC ATCATCGGCATGGCGCTCGGCTCGTACATCATCGAGCACGCCGATTGGGTGGCGGCGCAGATGGGAGATATCCTG AGGACCTACGCAGTCGAGGCTCTCCGACGAAGCATCTCGTGGCTCATGGGATGGCCCGCCGGCCTGAAGCTCAAC GGCGAGCTTGCGGCCTTTCTGGGCGACCTCTTTCTATGGGTGATTCACTATTGGTCCACCTGCATCGAGGCGCTA CAACCGGTGTTACCGCGTCTTGTATGGTTCATAGGCTTCTCCTCGTTCGCCGGCGCCAGCATGCCCATTGCCGTC TTCTCGGACCTGCTGTCGGCTCTGACGATGCACATCCACTCGTTTTACCTGGCGTCGGCTCGCATCCACCACTGG CAGCTCACCATCCTGCTGTCGCTGTTCCATCTCTTCCGCGGCAAGAAGCACAACGTGCTCCGCAACCGTATCGAT TCGTGCGACTACGACCTGGACCAGCTGCTCGTCGGCACCATCTTCTTCACCCTACTCTCCTTTTTGCTGCCGACG GTGGTTGTCTTCTACCTCAACTTTGCCGTGGCGAGGATGGTCATCATCTCCATCAAGGCTGGCTTCGACACATTG CTGTCGTGCCTCAATCACTTTCCGCTGTTTGCCCTGATGCTGCGTGTCAAAGATCCGAGACGGCTTCCTGGCGGC ATTCGGTTCGAGCTCCGGGATGGCCCCGAGCAGAAGATATCCGACAACGAGCCGCCCACGTCTGTCATCTACCTC AAGTCGATCCCGCTATCCTTCAGCGCCATGTTCCACCAATACTTCCAGATGGCTCACCGGATCCGCAAGCACTAC CTCTCGCCCGGAGTGCTCCTCCGACTGCTGACGGGCCAGTTCGTGCCACCCATCAACAGGAAGAACCTGTATAGC TTGCAGTACAGCATGCTTCCGGCCAAGAGGGCAACGCCGTGGGAGATGTGGCGCGCGCTCAACATGGAGCCGCAG AAGAAGTCGTTTCCGATGCCGCCGATGCCGTCGCTGGCGAGTGGGGGGAAGAGGGCTGCGGGGAGTGGGCGGTCG AGGTCGCACCAT |
| Transcript | >Ophio5|4714 ATGGTAGAACATGACGGGCTGATGCGAGTCTTCTGGCCGACGGACGCCTGCGGCTCCCATCGGCCGGGCGTCGTC GTGGGGTGGAGGAACTCGACGCTGGACGTGTTCGTCGTTGCCGTTCTCGACGACGCCCACCCTCAGGACGTCGAA TTTCATCTCAGACTCGGCTCTTTCTTCCGCGGTGGCCCCTATAACCCTTGTCGCATCTACGACGTCTGCGGCCAT GCCTCGATGCACGTCTTGGGCGTTTCCAACGCGCCGCACTCGGACACGGCCGACCCGTCCTGGGTCCGAGCGACG ACGAAGCCGCCGTTGAAGCTGCCGACCATCGCATGCGCCAAGGCGTCCAGCGTCCAGCTCATCCTCTACGACAGG CCGCAGCCCAAGCGCATGCAGTACATCTCGCTCGAGCCCATAGCCTTGGCCCTCGGCGACAAGAGCTCCCGTCTC GAGGATACTCAGGTCGACGACGAGATCGAGCAGCAGGAGCTAAGAGCCAAGGCGGCGCGGCGCAAGCTGGTGGAG AAGCTCAAGCTGCACACCATCGCTCATCGCGTGCCCTCTGCCCGGGACAGGGCCTTGCCCAAGATTGTCAATCAG GTCAATTGGTCGTGGGAGCTGGAGCGGACGCTGCAGAGCAACGTCGGCCGGCTCGGCCCGCGACCGAGGCGCAGC CTGAGCGTCTCGGAGAGGGTGGTCGAGTCCGCCACGACGATGCGCAACTATGTCTTGCGCCGGCTGTGGGCTCTC TTCACCATCTACCTGTTCCCGGTTCTGTGGCGCGGCTTCTGCCTGCTCCTCTTCGGCCACCGCATGGCCGCCGAG GTGCTGCTGCTGGCACTCGAGTTCCGCCCCAAGCCGGGGGGCGCCGCGCTCAAGGACATCTCGGCCACGGCCCAG CAGATTGAGATTCGGCTGCAGCAGTTTTGCTATTGGCCCATGCAATACTCGACACTGCGCCAGCGCAAGATGAAT TGGGCGAGTGTCACCACCAGCCATCCCGACTATATTCGTTTCTACAACAGCCTCTGGCTGGTGGCCAACGACGTC ATCATCGGCATGGCGCTCGGCTCGTACATCATCGAGCACGCCGATTGGGTGGCGGCGCAGATGGGAGATATCCTG AGGACCTACGCAGTCGAGGCTCTCCGACGAAGCATCTCGTGGCTCATGGGATGGCCCGCCGGCCTGAAGCTCAAC GGCGAGCTTGCGGCCTTTCTGGGCGACCTCTTTCTATGGGTGATTCACTATTGGTCCACCTGCATCGAGGCGCTA CAACCGGTGTTACCGCGTCTTGTATGGTTCATAGGCTTCTCCTCGTTCGCCGGCGCCAGCATGCCCATTGCCGTC TTCTCGGACCTGCTGTCGGCTCTGACGATGCACATCCACTCGTTTTACCTGGCGTCGGCTCGCATCCACCACTGG CAGCTCACCATCCTGCTGTCGCTGTTCCATCTCTTCCGCGGCAAGAAGCACAACGTGCTCCGCAACCGTATCGAT TCGTGCGACTACGACCTGGACCAGCTGCTCGTCGGCACCATCTTCTTCACCCTACTCTCCTTTTTGCTGCCGACG GTGGTTGTCTTCTACCTCAACTTTGCCGTGGCGAGGATGGTCATCATCTCCATCAAGGCTGGCTTCGACACATTG CTGTCGTGCCTCAATCACTTTCCGCTGTTTGCCCTGATGCTGCGTGTCAAAGATCCGAGACGGCTTCCTGGCGGC ATTCGGTTCGAGCTCCGGGATGGCCCCGAGCAGAAGATATCCGACAACGAGCCGCCCACGTCTGTCATCTACCTC AAGTCGATCCCGCTATCCTTCAGCGCCATGTTCCACCAATACTTCCAGATGGCTCACCGGATCCGCAAGCACTAC CTCTCGCCCGGAGTGCTCCTCCGACTGCTGACGGGCCAGTTCGTGCCACCCATCAACAGGAAGAACCTGTATAGC TTGCAGTACAGCATGCTTCCGGCCAAGAGGGCAACGCCGTGGGAGATGTGGCGCGCGCTCAACATGGAGCCGCAG AAGAAGTCGTTTCCGATGCCGCCGATGCCGTCGCTGGCGAGTGGGGGGAAGAGGGCTGCGGGGAGTGGGCGGTCG AGGTCGCACCATTAG |
| Gene | >Ophio5|4714 ATGGTAGAACATGACGGGCTGATGCGAGTCTTCTGGCCGACGGACGCCTGCGGCTCCCATCGGCCGGGCGTCGTC GTGGGGTGGAGGAACTCGACGCTGGACGTGTTCGTCGTTGCCGTTCTCGACGACGCCCACGTACGTTGGCCACTT GCTTGACTCCATCTTCGCTTCTCGACTCTGGCTGACCAGGCTTCAGCCTCAGGACGTCGAATTTCATCTCAGACT CGGCTCTTTCTTCCGCGGTGGCCCCTATAACCCTTGTCGCATCTACGACGTCTGCGGCCATGCCTCGATGCACGT CTTGGGCGTTTCCAACGCGCCGCACTCGGACACGGCCGACCCGTCCTGGGTCCGAGCGACGACGAAGCCGCCGTT GAAGCTGCCGACCATCGCATGCGCCAAGGCGTCCAGCGTCCAGCTCATCCTCTACGACAGGCCGCAGCCCAAGCG CATGCAGTACATCTCGCTCGAGCCCATAGCCTTGGCCCTCGGCGACAAGAGCTCCCGTCTCGAGGATACTCAGGT CGACGACGAGATCGAGCAGCAGGAGCTAAGAGCCAAGGCGGCGCGGCGCAAGCTGGTGGAGAAGCTCAAGCTGCA CACCATCGCTCATCGCGTGCCCTCTGCCCGGGACAGGGCCTTGCCCAAGATTGTCAATCAGGTCAATTGGTCGTG GGAGCTGGAGCGGACGCTGCAGAGCAACGTCGGCCGGCTCGGCCCGCGACCGAGGCGCAGCCTGAGCGTCTCGGA GAGGGTGGTCGAGTCCGCCACGACGATGCGCAACTATGTCTTGCGCCGGCTGTGGGCTCTCTTCACCATCTACCT GTTCCCGGTTCTGTGGCGCGGCTTCTGCCTGCTCCTCTTCGGCCACCGCATGGCCGCCGAGGTGCTGCTGCTGGC ACTCGAGTTCCGCCCCAAGCCGGGGGGCGCCGCGCTCAAGGACATCTCGGCCACGGCCCAGCAGATTGAGATTCG GCTGCAGCAGTTTTGCTATTGGCCCATGCAATACTCGACACTGCGCCAGCGCAAGATGAATTGGGCGAGTGTCAC CACCAGCCATCCCGACTATATTCGTTTCTACAACAGCCTCTGGCTGGTGGCCAACGACGTCATCATCGGCATGGC GCTCGGCTCGTACATCATCGAGCACGCCGATTGGGTGGCGGCGCAGATGGGAGATATCCTGAGGACCTACGCAGT CGAGGCTCTCCGACGAAGCATCTCGTGGCTCATGGGATGGCCCGCCGGCCTGAAGCTCAACGGCGAGCTTGCGGC CTTTCTGGGCGACCTCTTTCTATGGGTGATTCACTATTGGTCCAGTAAGTCTCGTGCCGCCCGGTGCCGTGCGAG AGCTAACAGGGAGCTTTTGCGACAGCCTGCATCGAGGCGCTACAACCGGTGTTACCGCGTCTTGTATGGTTCATA GGCTTCTCCTCGTTCGCCGGCGCCAGCATGCCCATTGCCGTCTTCTCGGACCTGCTGTCGGCTCTGACGATGCAC ATCCACTCGTTTTACCTGGCGTCGGCTCGCATCCACCACTGGCAGCTCACCATCCTGCTGTCGCTGTTCCATCTC TTCCGCGGCAAGAAGCACAACGTGCTCCGCAACCGTATCGATTCGTGCGACTACGACCTGGACCAGCTGCTCGTC GGCACCATCTTCTTCACCCTACTCTCCTTTTTGCTGCCGACGGTGGTTGTCTTCTACCTCAACTTTGCCGTGGCG AGGATGGTCATCATCTCCATCAAGGCTGGCTTCGACACATTGCTGTCGTGCCTCAATCACTTTCCGCTGTTTGCC CTGATGCTGCGTGTCAAAGATCCGAGACGGCTTCCTGGTGAGTTGAAGTCGAAGTGATGAGATGAAAAGGGGAAA AAAAAGGGGGGGGNNGGGGGGGGGGGGACTTTGAGTCGGGCTGACTCGATGCAAGGCGGCATTCGGTTCGAGCTC CGGGATGGCCCCGAGCAGAAGATATCCGACAACGAGCCGCCCACGTCTGTCATCTACCTCAAGGTCAGTCGCCCC AGTCACGCCGTGGCCAGCTGGGCCTTTGGCTGACACGACACAGTCGATCCCGCTATCCTTCAGCGCCATGTTCCA CCAATACTTCCAGATGGCTCACCGGATCCGCAAGCACTACCTCTCGCCCGGAGTGCTCCTCCGACTGCTGACGGG CCAGTTCGTGCCACCCATCAACAGGAAGAACCTGTATAGCTTGCAGTACAGCATGCTTCCGGCCAAGAGGGCAAC GCCGTGGGAGATGTGGCGCGCGCTCAACATGGAGCCGCAGAAGAAGTCGTTTCCGATGCCGCCGATGCCGTCGCT GGCGAGTGGGGGGAAGAGGGCTGCGGGGAGTGGGCGGTCGAGGTCGCACCATTAG |