© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|4693 |
| Gene name | |
| Location | scaffold_374:6681..7754 |
| Strand | - |
| Gene length (bp) | 1073 |
| Transcript length (bp) | 966 |
| Coding sequence length (bp) | 963 |
| Protein length (aa) | 321 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF05739 | SNARE | SNARE domain | 1.2E-13 | 265 | 317 |
| PF11416 | Syntaxin-5_N | Syntaxin-5 N-terminal, Sly1p-binding domain | 7.7E-10 | 2 | 23 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O13644|SED5_SCHPO | Integral membrane protein sed5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sed5 PE=3 SV=1 | 5 | 320 | 1.0E-86 |
| sp|Q01590|SED5_YEAST | Integral membrane protein SED5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SED5 PE=1 SV=1 | 5 | 320 | 9.0E-59 |
| sp|Q08DB5|STX5_BOVIN | Syntaxin-5 OS=Bos taurus GN=STX5 PE=2 SV=1 | 5 | 304 | 2.0E-57 |
| sp|Q8K1E0|STX5_MOUSE | Syntaxin-5 OS=Mus musculus GN=Stx5 PE=1 SV=3 | 5 | 304 | 3.0E-57 |
| sp|Q13190|STX5_HUMAN | Syntaxin-5 OS=Homo sapiens GN=STX5 PE=1 SV=2 | 5 | 304 | 7.0E-57 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O13644|SED5_SCHPO | Integral membrane protein sed5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sed5 PE=3 SV=1 | 5 | 320 | 1.0E-86 |
| sp|Q01590|SED5_YEAST | Integral membrane protein SED5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SED5 PE=1 SV=1 | 5 | 320 | 9.0E-59 |
| sp|Q08DB5|STX5_BOVIN | Syntaxin-5 OS=Bos taurus GN=STX5 PE=2 SV=1 | 5 | 304 | 2.0E-57 |
| sp|Q8K1E0|STX5_MOUSE | Syntaxin-5 OS=Mus musculus GN=Stx5 PE=1 SV=3 | 5 | 304 | 3.0E-57 |
| sp|Q13190|STX5_HUMAN | Syntaxin-5 OS=Homo sapiens GN=STX5 PE=1 SV=2 | 5 | 304 | 7.0E-57 |
| sp|Q08851|STX5_RAT | Syntaxin-5 OS=Rattus norvegicus GN=Stx5 PE=1 SV=2 | 5 | 304 | 1.0E-56 |
| sp|Q24509|STX5_DROME | Syntaxin-5 OS=Drosophila melanogaster GN=Syx5 PE=2 SV=2 | 1 | 305 | 4.0E-55 |
| sp|Q9LK09|SYP32_ARATH | Syntaxin-32 OS=Arabidopsis thaliana GN=SYP32 PE=2 SV=1 | 55 | 318 | 3.0E-48 |
| sp|Q9FFK1|SYP31_ARATH | Syntaxin-31 OS=Arabidopsis thaliana GN=SYP31 PE=1 SV=1 | 3 | 318 | 1.0E-43 |
| sp|Q20797|STX5_CAEEL | Putative syntaxin-5 OS=Caenorhabditis elegans GN=syx-5 PE=3 SV=1 | 7 | 304 | 4.0E-41 |
| sp|O14662|STX16_HUMAN | Syntaxin-16 OS=Homo sapiens GN=STX16 PE=1 SV=3 | 64 | 301 | 1.0E-05 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 46 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 300 | 319 | 19 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 34.23 | 16.10 | 52.36 |
| CcL | In ants, during behavior modification | 41.27 | 19.73 | 62.81 |
| CcD | In ants, recently dead | 32.73 | 15.27 | 50.18 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.512063 | no |
| SC16a | CcD | 0.893724 | no |
| CcL | CcD | 0.397403 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|4693 MAAASIQDRTAEFKSVLAQAQRRQPSNKVGSQRRSLLSDSQKAAAADGDAKTPRRSDFARKAAEIGRGISATMGK LEKLALLAKRRTLFDDRPVEINELTFVIKQDLSSLNQQIGALQTLSKQQHSKADQEGEHNKNVVYLLQGKLTDVS VNFKDVLEARTKNIQASRSRTENFISSVSQHAQPPLQPSASPLYGTPNRASPAPGSDTLSLNPVGDQQLLMMEEA QPTNTYTQQRGEAIEAIEKTISELGSIFGQLATMVSEQSDMIQRIDANTEDVVDNVEGAQRELLKYWTRVSSNRW LIAKMFGVLMIFFLLWVLVSG |
| Coding | >Ophio5|4693 ATGGCCGCCGCATCCATCCAAGACCGAACGGCCGAGTTCAAGTCGGTCCTGGCGCAGGCTCAGCGTCGCCAGCCA TCCAACAAGGTCGGTTCACAGCGGAGATCGCTGCTGAGTGACTCGCAAAAGGCCGCGGCCGCGGATGGAGACGCA AAGACACCCCGGCGCTCCGACTTTGCCCGGAAGGCGGCTGAGATCGGTCGCGGCATCTCGGCCACCATGGGCAAG CTGGAGAAGCTAGCGCTGCTCGCTAAGCGCCGCACGCTCTTCGACGACCGGCCCGTCGAAATCAACGAGCTCACC TTCGTCATCAAGCAAGACCTCTCGTCGCTGAACCAGCAGATTGGCGCGCTTCAGACGCTCTCCAAGCAGCAGCAC TCCAAGGCCGACCAGGAGGGCGAGCACAACAAGAACGTCGTCTACCTGCTGCAGGGAAAGCTTACCGACGTCTCG GTCAACTTCAAGGACGTGCTCGAGGCCCGGACGAAGAATATCCAGGCCTCACGGTCACGGACGGAAAACTTTATA TCGTCGGTGTCGCAGCACGCCCAGCCGCCGCTGCAGCCGTCGGCCTCGCCCCTGTACGGCACGCCCAACCGCGCC TCACCCGCGCCGGGCTCCGACACGCTGTCGCTCAACCCCGTCGGCGACCAGCAGCTACTGATGATGGAGGAGGCC CAGCCGACAAACACGTACACACAGCAGAGGGGCGAGGCCATCGAGGCCATCGAAAAGACCATCAGCGAGCTGGGC AGCATCTTTGGCCAGCTGGCCACCATGGTCTCGGAGCAGAGCGACATGATCCAGCGCATCGACGCCAATACGGAA GACGTGGTCGACAACGTCGAGGGCGCCCAGCGCGAGCTGCTCAAGTACTGGACGCGCGTGTCGAGCAACCGGTGG CTTATTGCCAAGATGTTTGGCGTCTTGATGATATTCTTTTTACTCTGGGTTCTCGTGTCGGGT |
| Transcript | >Ophio5|4693 ATGGCCGCCGCATCCATCCAAGACCGAACGGCCGAGTTCAAGTCGGTCCTGGCGCAGGCTCAGCGTCGCCAGCCA TCCAACAAGGTCGGTTCACAGCGGAGATCGCTGCTGAGTGACTCGCAAAAGGCCGCGGCCGCGGATGGAGACGCA AAGACACCCCGGCGCTCCGACTTTGCCCGGAAGGCGGCTGAGATCGGTCGCGGCATCTCGGCCACCATGGGCAAG CTGGAGAAGCTAGCGCTGCTCGCTAAGCGCCGCACGCTCTTCGACGACCGGCCCGTCGAAATCAACGAGCTCACC TTCGTCATCAAGCAAGACCTCTCGTCGCTGAACCAGCAGATTGGCGCGCTTCAGACGCTCTCCAAGCAGCAGCAC TCCAAGGCCGACCAGGAGGGCGAGCACAACAAGAACGTCGTCTACCTGCTGCAGGGAAAGCTTACCGACGTCTCG GTCAACTTCAAGGACGTGCTCGAGGCCCGGACGAAGAATATCCAGGCCTCACGGTCACGGACGGAAAACTTTATA TCGTCGGTGTCGCAGCACGCCCAGCCGCCGCTGCAGCCGTCGGCCTCGCCCCTGTACGGCACGCCCAACCGCGCC TCACCCGCGCCGGGCTCCGACACGCTGTCGCTCAACCCCGTCGGCGACCAGCAGCTACTGATGATGGAGGAGGCC CAGCCGACAAACACGTACACACAGCAGAGGGGCGAGGCCATCGAGGCCATCGAAAAGACCATCAGCGAGCTGGGC AGCATCTTTGGCCAGCTGGCCACCATGGTCTCGGAGCAGAGCGACATGATCCAGCGCATCGACGCCAATACGGAA GACGTGGTCGACAACGTCGAGGGCGCCCAGCGCGAGCTGCTCAAGTACTGGACGCGCGTGTCGAGCAACCGGTGG CTTATTGCCAAGATGTTTGGCGTCTTGATGATATTCTTTTTACTCTGGGTTCTCGTGTCGGGTTAG |
| Gene | >Ophio5|4693 ATGGCCGCCGCATCCATCCAAGACCGAACGGCCGAGTTCAAGTCGGTCCTGGCGCAGGCTCAGCGTCGCCAGCCA TCCAACAAGGTCGGTTCACAGCGGAGATCGCTGCTGAGTGACTCGCAAAAGGCCGCGGCCGCGGATGGAGACGCA AAGACACCCCGGCGCTCCGACTTTGCCCGGAAGGCGGCTGAGATCGGTCGCGGCATCTCGGCCACCATGGGCAAG CTGGAGAAGCTAGCGCTGCGTGAGTTGGCCGAGCGAGACGAGAGATACAGCGCATTCTGATTATATTGCAGTCGC TAAGCGCCGCACGCTCTTCGACGACCGGCCCGTCGAAATCAACGAGCTCACCTTCGTCATCAAGCAAGACCTCTC GTCGCTGAACCAGCAGATTGGCGCGCTTCAGACGCTCTCCAAGCAGCAGCACTCCAAGGCCGACCAGGAGGGCGA GCACAACAAGAACGTCGTCTACCTGCTGCAGGGAAAGCTTACCGACGTCTCGGTCAACTTCAAGGACGTGCTCGA GGCCCGGACGAAGAATATCCAGGCCTCACGGTCACGGACGGAAAACTTTATATCGTCGGTGTCGCAGCACGCCCA GCCGCCGCTGCAGCCGTCGGCCTCGCCCCTGTACGGCACGCCCAACCGCGCCTCACCCGCGCCGGGCTCCGACAC GCTGTCGCTCAACCCCGTCGGCGACCAGCAGCTACTGATGATGGAGGAGGCCCAGCCGACAAACACGTACACACA GCAGAGGGGCGAGGCCATCGAGGCCATCGAAAAGACCATCAGCGAGCTGGGCAGCATCTTTGGCCAGCTGGCCAC CATGGTCTCGGAGCAGAGCGACATGATCCAGCGCATCGACGCCAATACGGAAGACGTGGTCGACAACGTCGAGGG CGCCCAGCGCGAGCTGCTCAAGTACTGGACGCGCGTGTCGAGCAACCGGTGGCTTATTGCCAAGATGTTTGGCGT CTTGATGATATTCTTTTTGTGAGTTGTTCGTCCTCAACTGCCGCTACGGACAAAGACTGACTCCGCGCGCCAGAC TCTGGGTTCTCGTGTCGGGTTAG |