Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|4693
Gene name
Locationscaffold_374:6681..7754
Strand-
Gene length (bp)1073
Transcript length (bp)966
Coding sequence length (bp)963
Protein length (aa) 321

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF05739 SNARE SNARE domain 1.2E-13 265 317
PF11416 Syntaxin-5_N Syntaxin-5 N-terminal, Sly1p-binding domain 7.7E-10 2 23

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|O13644|SED5_SCHPO Integral membrane protein sed5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sed5 PE=3 SV=1 5 320 1.0E-86
sp|Q01590|SED5_YEAST Integral membrane protein SED5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SED5 PE=1 SV=1 5 320 9.0E-59
sp|Q08DB5|STX5_BOVIN Syntaxin-5 OS=Bos taurus GN=STX5 PE=2 SV=1 5 304 2.0E-57
sp|Q8K1E0|STX5_MOUSE Syntaxin-5 OS=Mus musculus GN=Stx5 PE=1 SV=3 5 304 3.0E-57
sp|Q13190|STX5_HUMAN Syntaxin-5 OS=Homo sapiens GN=STX5 PE=1 SV=2 5 304 7.0E-57
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Swissprot ID Swissprot Description Start End E-value
sp|O13644|SED5_SCHPO Integral membrane protein sed5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sed5 PE=3 SV=1 5 320 1.0E-86
sp|Q01590|SED5_YEAST Integral membrane protein SED5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SED5 PE=1 SV=1 5 320 9.0E-59
sp|Q08DB5|STX5_BOVIN Syntaxin-5 OS=Bos taurus GN=STX5 PE=2 SV=1 5 304 2.0E-57
sp|Q8K1E0|STX5_MOUSE Syntaxin-5 OS=Mus musculus GN=Stx5 PE=1 SV=3 5 304 3.0E-57
sp|Q13190|STX5_HUMAN Syntaxin-5 OS=Homo sapiens GN=STX5 PE=1 SV=2 5 304 7.0E-57
sp|Q08851|STX5_RAT Syntaxin-5 OS=Rattus norvegicus GN=Stx5 PE=1 SV=2 5 304 1.0E-56
sp|Q24509|STX5_DROME Syntaxin-5 OS=Drosophila melanogaster GN=Syx5 PE=2 SV=2 1 305 4.0E-55
sp|Q9LK09|SYP32_ARATH Syntaxin-32 OS=Arabidopsis thaliana GN=SYP32 PE=2 SV=1 55 318 3.0E-48
sp|Q9FFK1|SYP31_ARATH Syntaxin-31 OS=Arabidopsis thaliana GN=SYP31 PE=1 SV=1 3 318 1.0E-43
sp|Q20797|STX5_CAEEL Putative syntaxin-5 OS=Caenorhabditis elegans GN=syx-5 PE=3 SV=1 7 304 4.0E-41
sp|O14662|STX16_HUMAN Syntaxin-16 OS=Homo sapiens GN=STX16 PE=1 SV=3 64 301 1.0E-05
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 46 0.45

Transmembrane Domains

Domain # Start End Length
1 300 319 19

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|4693
MAAASIQDRTAEFKSVLAQAQRRQPSNKVGSQRRSLLSDSQKAAAADGDAKTPRRSDFARKAAEIGRGISATMGK
LEKLALLAKRRTLFDDRPVEINELTFVIKQDLSSLNQQIGALQTLSKQQHSKADQEGEHNKNVVYLLQGKLTDVS
VNFKDVLEARTKNIQASRSRTENFISSVSQHAQPPLQPSASPLYGTPNRASPAPGSDTLSLNPVGDQQLLMMEEA
QPTNTYTQQRGEAIEAIEKTISELGSIFGQLATMVSEQSDMIQRIDANTEDVVDNVEGAQRELLKYWTRVSSNRW
LIAKMFGVLMIFFLLWVLVSG
Coding >Ophio5|4693
ATGGCCGCCGCATCCATCCAAGACCGAACGGCCGAGTTCAAGTCGGTCCTGGCGCAGGCTCAGCGTCGCCAGCCA
TCCAACAAGGTCGGTTCACAGCGGAGATCGCTGCTGAGTGACTCGCAAAAGGCCGCGGCCGCGGATGGAGACGCA
AAGACACCCCGGCGCTCCGACTTTGCCCGGAAGGCGGCTGAGATCGGTCGCGGCATCTCGGCCACCATGGGCAAG
CTGGAGAAGCTAGCGCTGCTCGCTAAGCGCCGCACGCTCTTCGACGACCGGCCCGTCGAAATCAACGAGCTCACC
TTCGTCATCAAGCAAGACCTCTCGTCGCTGAACCAGCAGATTGGCGCGCTTCAGACGCTCTCCAAGCAGCAGCAC
TCCAAGGCCGACCAGGAGGGCGAGCACAACAAGAACGTCGTCTACCTGCTGCAGGGAAAGCTTACCGACGTCTCG
GTCAACTTCAAGGACGTGCTCGAGGCCCGGACGAAGAATATCCAGGCCTCACGGTCACGGACGGAAAACTTTATA
TCGTCGGTGTCGCAGCACGCCCAGCCGCCGCTGCAGCCGTCGGCCTCGCCCCTGTACGGCACGCCCAACCGCGCC
TCACCCGCGCCGGGCTCCGACACGCTGTCGCTCAACCCCGTCGGCGACCAGCAGCTACTGATGATGGAGGAGGCC
CAGCCGACAAACACGTACACACAGCAGAGGGGCGAGGCCATCGAGGCCATCGAAAAGACCATCAGCGAGCTGGGC
AGCATCTTTGGCCAGCTGGCCACCATGGTCTCGGAGCAGAGCGACATGATCCAGCGCATCGACGCCAATACGGAA
GACGTGGTCGACAACGTCGAGGGCGCCCAGCGCGAGCTGCTCAAGTACTGGACGCGCGTGTCGAGCAACCGGTGG
CTTATTGCCAAGATGTTTGGCGTCTTGATGATATTCTTTTTACTCTGGGTTCTCGTGTCGGGT
Transcript >Ophio5|4693
ATGGCCGCCGCATCCATCCAAGACCGAACGGCCGAGTTCAAGTCGGTCCTGGCGCAGGCTCAGCGTCGCCAGCCA
TCCAACAAGGTCGGTTCACAGCGGAGATCGCTGCTGAGTGACTCGCAAAAGGCCGCGGCCGCGGATGGAGACGCA
AAGACACCCCGGCGCTCCGACTTTGCCCGGAAGGCGGCTGAGATCGGTCGCGGCATCTCGGCCACCATGGGCAAG
CTGGAGAAGCTAGCGCTGCTCGCTAAGCGCCGCACGCTCTTCGACGACCGGCCCGTCGAAATCAACGAGCTCACC
TTCGTCATCAAGCAAGACCTCTCGTCGCTGAACCAGCAGATTGGCGCGCTTCAGACGCTCTCCAAGCAGCAGCAC
TCCAAGGCCGACCAGGAGGGCGAGCACAACAAGAACGTCGTCTACCTGCTGCAGGGAAAGCTTACCGACGTCTCG
GTCAACTTCAAGGACGTGCTCGAGGCCCGGACGAAGAATATCCAGGCCTCACGGTCACGGACGGAAAACTTTATA
TCGTCGGTGTCGCAGCACGCCCAGCCGCCGCTGCAGCCGTCGGCCTCGCCCCTGTACGGCACGCCCAACCGCGCC
TCACCCGCGCCGGGCTCCGACACGCTGTCGCTCAACCCCGTCGGCGACCAGCAGCTACTGATGATGGAGGAGGCC
CAGCCGACAAACACGTACACACAGCAGAGGGGCGAGGCCATCGAGGCCATCGAAAAGACCATCAGCGAGCTGGGC
AGCATCTTTGGCCAGCTGGCCACCATGGTCTCGGAGCAGAGCGACATGATCCAGCGCATCGACGCCAATACGGAA
GACGTGGTCGACAACGTCGAGGGCGCCCAGCGCGAGCTGCTCAAGTACTGGACGCGCGTGTCGAGCAACCGGTGG
CTTATTGCCAAGATGTTTGGCGTCTTGATGATATTCTTTTTACTCTGGGTTCTCGTGTCGGGTTAG
Gene >Ophio5|4693
ATGGCCGCCGCATCCATCCAAGACCGAACGGCCGAGTTCAAGTCGGTCCTGGCGCAGGCTCAGCGTCGCCAGCCA
TCCAACAAGGTCGGTTCACAGCGGAGATCGCTGCTGAGTGACTCGCAAAAGGCCGCGGCCGCGGATGGAGACGCA
AAGACACCCCGGCGCTCCGACTTTGCCCGGAAGGCGGCTGAGATCGGTCGCGGCATCTCGGCCACCATGGGCAAG
CTGGAGAAGCTAGCGCTGCGTGAGTTGGCCGAGCGAGACGAGAGATACAGCGCATTCTGATTATATTGCAGTCGC
TAAGCGCCGCACGCTCTTCGACGACCGGCCCGTCGAAATCAACGAGCTCACCTTCGTCATCAAGCAAGACCTCTC
GTCGCTGAACCAGCAGATTGGCGCGCTTCAGACGCTCTCCAAGCAGCAGCACTCCAAGGCCGACCAGGAGGGCGA
GCACAACAAGAACGTCGTCTACCTGCTGCAGGGAAAGCTTACCGACGTCTCGGTCAACTTCAAGGACGTGCTCGA
GGCCCGGACGAAGAATATCCAGGCCTCACGGTCACGGACGGAAAACTTTATATCGTCGGTGTCGCAGCACGCCCA
GCCGCCGCTGCAGCCGTCGGCCTCGCCCCTGTACGGCACGCCCAACCGCGCCTCACCCGCGCCGGGCTCCGACAC
GCTGTCGCTCAACCCCGTCGGCGACCAGCAGCTACTGATGATGGAGGAGGCCCAGCCGACAAACACGTACACACA
GCAGAGGGGCGAGGCCATCGAGGCCATCGAAAAGACCATCAGCGAGCTGGGCAGCATCTTTGGCCAGCTGGCCAC
CATGGTCTCGGAGCAGAGCGACATGATCCAGCGCATCGACGCCAATACGGAAGACGTGGTCGACAACGTCGAGGG
CGCCCAGCGCGAGCTGCTCAAGTACTGGACGCGCGTGTCGAGCAACCGGTGGCTTATTGCCAAGATGTTTGGCGT
CTTGATGATATTCTTTTTGTGAGTTGTTCGTCCTCAACTGCCGCTACGGACAAAGACTGACTCCGCGCGCCAGAC
TCTGGGTTCTCGTGTCGGGTTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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