Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|4674
Gene name
Locationscaffold_372:7844..9221
Strand+
Gene length (bp)1377
Transcript length (bp)1377
Coding sequence length (bp)1374
Protein length (aa) 458

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF13668 Ferritin_2 Ferritin-like domain 9.1E-20 112 242

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|P53693|RDS1_SCHPO Protein rds1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rds1 PE=2 SV=2 74 458 1.0E-116

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 19 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|4674
MAYLASGLALTLLNLASAIPLEPPSQAPPAVVVPHANVTSHGPYNGPPATTTGALSAPVVSPSIPSLPPPENSYD
YPADGQLHEHQPAPFTPAGGIGTNGTAPVYRVQSDFDYQSLALALYQEWIELDLFHWGLATFSVDEFESYGINAE
DRFLIQHMADQEIGHATVLTNMLGPQAPKQCTYNYPVSNVPEFVDFNQKLTRWGEAGVYGFLPHLNSGPAAQLLL
QSITVEARQQMIFRQLGGQFPMPEWHTPSIPQSWSWTLLAPYISSCPYNQTRLVWQNFPALRILNQPNPARIRGS
DAWNETTGGWSNTLSTANVPRSELCINATDKAQDCAPAVSQNRSIPLSYPGRKVYLQWDGPGQLVGPNNSYVTTT
NVVEPKFAAWVSQLNVTYSPLLKVSAQDRTAQTIQPDVSTWAGDPAINGTMFLALTDLDLYVTPYNLSLINPHVA
ALAVYQAG
Coding >Ophio5|4674
ATGGCCTATCTCGCTTCTGGGCTTGCCCTCACGCTACTGAACCTTGCTTCTGCCATTCCGTTGGAGCCTCCTTCT
CAGGCTCCGCCAGCAGTTGTTGTCCCTCATGCCAACGTCACGTCTCACGGTCCCTACAACGGCCCCCCTGCCACC
ACCACAGGCGCGCTCTCAGCCCCGGTCGTGAGCCCCTCGATTCCGTCTCTGCCTCCGCCGGAAAACTCGTACGAC
TATCCAGCCGACGGTCAACTCCACGAACATCAGCCGGCGCCCTTCACCCCGGCCGGCGGCATCGGGACCAATGGA
ACGGCACCTGTTTACCGCGTACAGAGCGATTTTGACTATCAGTCGTTGGCGCTTGCTCTCTATCAGGAATGGATC
GAGTTAGACCTCTTCCATTGGGGTTTGGCCACGTTCAGCGTTGACGAATTCGAGTCGTACGGTATCAATGCCGAG
GACCGCTTCCTGATACAGCACATGGCGGACCAAGAGATCGGTCACGCAACCGTCTTGACAAATATGCTCGGGCCC
CAGGCGCCGAAGCAATGTACTTACAACTATCCCGTGTCCAACGTGCCCGAGTTTGTCGACTTCAACCAGAAGCTC
ACGCGATGGGGCGAGGCGGGCGTTTATGGCTTTTTGCCCCATCTCAACTCGGGCCCTGCCGCGCAGCTGCTTCTG
CAGAGCATCACCGTCGAGGCTCGCCAGCAGATGATATTCCGACAATTAGGAGGCCAGTTCCCCATGCCGGAATGG
CACACCCCCAGCATCCCCCAGAGCTGGTCCTGGACTCTCCTGGCGCCTTACATCTCGAGCTGTCCCTACAACCAG
ACGCGTCTTGTGTGGCAGAACTTTCCCGCGCTGCGTATACTCAACCAGCCCAACCCAGCCCGGATTCGTGGCTCC
GACGCCTGGAACGAGACGACGGGGGGATGGAGTAATACGCTCTCTACCGCCAACGTCCCTCGCTCCGAGCTTTGC
ATCAACGCAACCGACAAGGCGCAGGACTGTGCCCCGGCCGTCAGCCAGAACAGAAGCATCCCGCTGTCGTACCCT
GGCCGAAAGGTCTATCTACAATGGGATGGCCCAGGGCAGTTGGTCGGCCCCAACAACAGCTACGTCACCACGACA
AACGTGGTTGAGCCCAAGTTCGCTGCATGGGTCTCGCAGCTCAACGTCACCTACTCGCCACTCCTAAAGGTCAGT
GCGCAAGACAGAACTGCGCAGACGATTCAGCCGGATGTGTCGACCTGGGCTGGTGATCCAGCCATCAATGGGACC
ATGTTTTTGGCCCTCACGGATCTGGACTTGTATGTGACGCCGTATAACTTGTCGTTGATCAACCCGCATGTTGCA
GCTCTTGCCGTCTATCAGGCCGGT
Transcript >Ophio5|4674
ATGGCCTATCTCGCTTCTGGGCTTGCCCTCACGCTACTGAACCTTGCTTCTGCCATTCCGTTGGAGCCTCCTTCT
CAGGCTCCGCCAGCAGTTGTTGTCCCTCATGCCAACGTCACGTCTCACGGTCCCTACAACGGCCCCCCTGCCACC
ACCACAGGCGCGCTCTCAGCCCCGGTCGTGAGCCCCTCGATTCCGTCTCTGCCTCCGCCGGAAAACTCGTACGAC
TATCCAGCCGACGGTCAACTCCACGAACATCAGCCGGCGCCCTTCACCCCGGCCGGCGGCATCGGGACCAATGGA
ACGGCACCTGTTTACCGCGTACAGAGCGATTTTGACTATCAGTCGTTGGCGCTTGCTCTCTATCAGGAATGGATC
GAGTTAGACCTCTTCCATTGGGGTTTGGCCACGTTCAGCGTTGACGAATTCGAGTCGTACGGTATCAATGCCGAG
GACCGCTTCCTGATACAGCACATGGCGGACCAAGAGATCGGTCACGCAACCGTCTTGACAAATATGCTCGGGCCC
CAGGCGCCGAAGCAATGTACTTACAACTATCCCGTGTCCAACGTGCCCGAGTTTGTCGACTTCAACCAGAAGCTC
ACGCGATGGGGCGAGGCGGGCGTTTATGGCTTTTTGCCCCATCTCAACTCGGGCCCTGCCGCGCAGCTGCTTCTG
CAGAGCATCACCGTCGAGGCTCGCCAGCAGATGATATTCCGACAATTAGGAGGCCAGTTCCCCATGCCGGAATGG
CACACCCCCAGCATCCCCCAGAGCTGGTCCTGGACTCTCCTGGCGCCTTACATCTCGAGCTGTCCCTACAACCAG
ACGCGTCTTGTGTGGCAGAACTTTCCCGCGCTGCGTATACTCAACCAGCCCAACCCAGCCCGGATTCGTGGCTCC
GACGCCTGGAACGAGACGACGGGGGGATGGAGTAATACGCTCTCTACCGCCAACGTCCCTCGCTCCGAGCTTTGC
ATCAACGCAACCGACAAGGCGCAGGACTGTGCCCCGGCCGTCAGCCAGAACAGAAGCATCCCGCTGTCGTACCCT
GGCCGAAAGGTCTATCTACAATGGGATGGCCCAGGGCAGTTGGTCGGCCCCAACAACAGCTACGTCACCACGACA
AACGTGGTTGAGCCCAAGTTCGCTGCATGGGTCTCGCAGCTCAACGTCACCTACTCGCCACTCCTAAAGGTCAGT
GCGCAAGACAGAACTGCGCAGACGATTCAGCCGGATGTGTCGACCTGGGCTGGTGATCCAGCCATCAATGGGACC
ATGTTTTTGGCCCTCACGGATCTGGACTTGTATGTGACGCCGTATAACTTGTCGTTGATCAACCCGCATGTTGCA
GCTCTTGCCGTCTATCAGGCCGGTTAG
Gene >Ophio5|4674
ATGGCCTATCTCGCTTCTGGGCTTGCCCTCACGCTACTGAACCTTGCTTCTGCCATTCCGTTGGAGCCTCCTTCT
CAGGCTCCGCCAGCAGTTGTTGTCCCTCATGCCAACGTCACGTCTCACGGTCCCTACAACGGCCCCCCTGCCACC
ACCACAGGCGCGCTCTCAGCCCCGGTCGTGAGCCCCTCGATTCCGTCTCTGCCTCCGCCGGAAAACTCGTACGAC
TATCCAGCCGACGGTCAACTCCACGAACATCAGCCGGCGCCCTTCACCCCGGCCGGCGGCATCGGGACCAATGGA
ACGGCACCTGTTTACCGCGTACAGAGCGATTTTGACTATCAGTCGTTGGCGCTTGCTCTCTATCAGGAATGGATC
GAGTTAGACCTCTTCCATTGGGGTTTGGCCACGTTCAGCGTTGACGAATTCGAGTCGTACGGTATCAATGCCGAG
GACCGCTTCCTGATACAGCACATGGCGGACCAAGAGATCGGTCACGCAACCGTCTTGACAAATATGCTCGGGCCC
CAGGCGCCGAAGCAATGTACTTACAACTATCCCGTGTCCAACGTGCCCGAGTTTGTCGACTTCAACCAGAAGCTC
ACGCGATGGGGCGAGGCGGGCGTTTATGGCTTTTTGCCCCATCTCAACTCGGGCCCTGCCGCGCAGCTGCTTCTG
CAGAGCATCACCGTCGAGGCTCGCCAGCAGATGATATTCCGACAATTAGGAGGCCAGTTCCCCATGCCGGAATGG
CACACCCCCAGCATCCCCCAGAGCTGGTCCTGGACTCTCCTGGCGCCTTACATCTCGAGCTGTCCCTACAACCAG
ACGCGTCTTGTGTGGCAGAACTTTCCCGCGCTGCGTATACTCAACCAGCCCAACCCAGCCCGGATTCGTGGCTCC
GACGCCTGGAACGAGACGACGGGGGGATGGAGTAATACGCTCTCTACCGCCAACGTCCCTCGCTCCGAGCTTTGC
ATCAACGCAACCGACAAGGCGCAGGACTGTGCCCCGGCCGTCAGCCAGAACAGAAGCATCCCGCTGTCGTACCCT
GGCCGAAAGGTCTATCTACAATGGGATGGCCCAGGGCAGTTGGTCGGCCCCAACAACAGCTACGTCACCACGACA
AACGTGGTTGAGCCCAAGTTCGCTGCATGGGTCTCGCAGCTCAACGTCACCTACTCGCCACTCCTAAAGGTCAGT
GCGCAAGACAGAACTGCGCAGACGATTCAGCCGGATGTGTCGACCTGGGCTGGTGATCCAGCCATCAATGGGACC
ATGTTTTTGGCCCTCACGGATCTGGACTTGTATGTGACGCCGTATAACTTGTCGTTGATCAACCCGCATGTTGCA
GCTCTTGCCGTCTATCAGGCCGGTTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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