Protein ID | Ophio5|467 |
Gene name | |
Location | scaffold_1103:1109..3440 |
Strand | + |
Gene length (bp) | 2331 |
Transcript length (bp) | 2331 |
Coding sequence length (bp) | 2328 |
Protein length (aa) | 776 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|A2VD00|EIF3A_XENLA | Eukaryotic translation initiation factor 3 subunit A OS=Xenopus laevis GN=eif3a PE=2 SV=1 | 581 | 750 | 5.0E-06 |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
Yes | 1 - 21 | 0.45 |
Expression values
Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
---|---|---|---|---|
SC16a | Pure fungal culture | 0.02 | 0.0 | 0.14 |
CcL | In ants, during behavior modification | 0.00 | 0.0 | 0.00 |
CcD | In ants, recently dead | 0.15 | 0.0 | 0.40 |
Differential expression
Label1 | Label2 | Q-value | Significant difference |
---|---|---|---|
SC16a | CcL | 1.0 | no |
SC16a | CcD | 1.0 | no |
CcL | CcD | 1.0 | no |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ophio5|467 MRRLLALGLATVSPVGLAEATAHTDAASAPSRYQADKFASHTAHLATPIRYDECQDAIEQRFPHRDERTKLCHQF LVTGVLPDLSDTTHTQAEQFPQRCDRNKLLHVCRSQQSSHTSSSSFCLERLEVGLAQDPSGTWEFCRRHIISHDF LAAENLNSLDSRSRALFDDCFQSQSEVTKACESIHAPESLELPDCHGVKDYEHVVRIFGASLQDACSSQDAASTE NEMRTLQVKTNNNGLAAFKSTCDCHKLHSAGNEANSASPSSSSLSPNPSSLTTLRATSSTQMSAPIESDSLPTTR LPAARRFDSPAFPQDTAPPASDEATAKSKMLYSRAKAKPQKSSAGAASFSGPYSSQSSHAVTQENHLTQSDINSL LEHSDKFKFEIRNGLCAIHSMPDEARHVSWRLIYDLDVNVESKHRFRFEICNPSEHGRVVTKIQGQYIYGYALEV NGGASVAGSVNPNGKNEILCDTGNLTYVTVHDKGIIDVRLAGEVVVENKGGIIFKCQSIHNCEESKCQADECNSN LIASITPEEIASLEDEIPGPDDLDFESDFDPDGQAQGSGNRTHPRPGYETGDHRNDTSNGPDYGPEYGPGNSPDY GPGNGPEYGPGTGPDYGPGNGPEYGPGTGPDYGPGNGPEYGPEYGPGTGPDYGPGNGSEYGAGNGPDYGPGNSPG TSPDYNPGNGPEYGPDHEPATGPEYGIGPGGSDTRPGGPGPDYGLEPGSGPDNGTDYDPVNNPDYEPGMGPGYGM GPGGSDTRXXXXXXXXXXXXXXXXWL |
Coding | >Ophio5|467 ATGAGACGCCTTCTCGCCCTTGGCCTCGCCACGGTCAGTCCCGTCGGCTTGGCTGAGGCTACCGCACATACGGAC GCTGCCTCGGCTCCCTCTCGATATCAAGCAGATAAGTTTGCTTCACATACGGCACACCTCGCCACACCCATTCGC TACGACGAGTGTCAAGATGCCATCGAGCAAAGGTTTCCCCATCGAGACGAGCGAACTAAACTCTGCCATCAGTTC CTCGTCACAGGAGTACTTCCCGACCTATCAGACACCACACACACACAGGCTGAGCAGTTTCCTCAAAGGTGTGAC AGAAACAAGCTACTACACGTCTGCCGTTCTCAACAAAGTTCCCACACCTCCTCCAGCTCATTCTGCCTAGAGAGG CTCGAGGTAGGGCTCGCTCAGGATCCCAGTGGCACTTGGGAGTTTTGCAGAAGACACATCATCAGTCATGACTTC CTTGCTGCGGAAAACCTGAACAGTCTAGACTCTCGTTCTCGAGCGCTCTTCGATGACTGCTTTCAGAGCCAGTCC GAGGTGACCAAGGCCTGCGAATCCATCCATGCTCCGGAAAGTCTCGAGCTGCCTGACTGCCACGGCGTCAAGGAC TACGAGCACGTCGTCCGCATATTCGGCGCCTCTCTCCAAGATGCCTGCAGCAGTCAGGATGCCGCCTCGACTGAG AACGAGATGCGAACTCTACAAGTCAAAACGAACAACAACGGCCTTGCCGCTTTCAAGTCCACCTGTGACTGCCAT AAGCTTCATTCAGCAGGCAACGAAGCTAACTCCGCCTCCCCCTCGTCTTCTTCTTTGTCACCCAACCCATCTTCC CTCACCACTCTCAGGGCCACCTCTTCTACGCAGATGTCTGCCCCGATCGAGTCCGACTCCCTGCCTACTACCCGC TTACCTGCCGCTCGTCGCTTCGACAGCCCGGCTTTCCCTCAGGACACAGCCCCTCCCGCTTCAGACGAGGCCACT GCAAAGAGCAAGATGCTCTATTCCCGCGCCAAGGCCAAGCCGCAGAAGTCATCTGCCGGCGCCGCTTCCTTCTCC GGGCCCTACAGTTCTCAGTCCTCACATGCGGTAACCCAAGAAAATCACCTCACGCAATCCGATATCAACTCTCTG CTTGAGCACTCGGATAAGTTCAAGTTCGAGATCCGCAATGGCCTCTGTGCCATTCACAGCATGCCTGACGAGGCC CGCCACGTCAGCTGGCGACTGATTTACGATCTGGACGTCAACGTCGAGTCCAAGCACAGGTTCCGCTTCGAGATC TGCAATCCGTCGGAGCATGGCCGTGTCGTGACCAAGATCCAAGGACAATACATCTATGGTTACGCTCTCGAGGTC AACGGCGGCGCCTCTGTCGCAGGCTCCGTCAACCCCAACGGTAAGAATGAGATTCTCTGCGACACTGGCAACCTG ACGTACGTCACCGTTCACGACAAAGGCATCATCGACGTCAGGCTGGCCGGCGAAGTCGTTGTCGAGAACAAGGGA GGCATCATCTTCAAATGCCAAAGCATCCACAACTGCGAGGAATCAAAGTGCCAAGCCGATGAATGCAATTCCAAC CTCATCGCCTCCATCACGCCTGAAGAGATTGCCTCATTAGAGGACGAAATTCCGGGTCCTGATGACCTTGATTTT GAGTCCGATTTTGATCCCGATGGCCAAGCTCAAGGTTCAGGCAACCGCACTCATCCTCGCCCAGGGTACGAGACT GGAGACCACCGAAATGATACCAGCAACGGTCCAGACTACGGTCCCGAGTACGGTCCTGGCAACAGCCCGGACTAC GGTCCCGGCAACGGTCCCGAGTACGGCCCCGGCACCGGCCCTGACTACGGTCCCGGCAACGGTCCCGAGTACGGC CCCGGCACCGGCCCTGACTATGGTCCCGGAAACGGTCCCGAGTACGGTCCCGAGTACGGTCCCGGCACCGGCCCT GACTATGGTCCCGGTAACGGTTCCGAGTACGGTGCCGGCAACGGTCCTGACTACGGTCCCGGCAACAGCCCTGGC ACTAGTCCCGACTACAATCCCGGCAACGGTCCCGAGTACGGCCCTGACCACGAGCCGGCGACCGGCCCTGAATAT GGTATAGGCCCTGGTGGCTCAGACACCCGCCCTGGAGGTCCTGGACCGGACTACGGTCTCGAGCCTGGGTCCGGG CCTGACAATGGCACCGACTACGATCCCGTTAATAATCCTGACTATGAGCCCGGAATGGGTCCTGGATACGGCATG GGCCCTGGTGGCTCTGATACCCGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGG CTC |
Transcript | >Ophio5|467 ATGAGACGCCTTCTCGCCCTTGGCCTCGCCACGGTCAGTCCCGTCGGCTTGGCTGAGGCTACCGCACATACGGAC GCTGCCTCGGCTCCCTCTCGATATCAAGCAGATAAGTTTGCTTCACATACGGCACACCTCGCCACACCCATTCGC TACGACGAGTGTCAAGATGCCATCGAGCAAAGGTTTCCCCATCGAGACGAGCGAACTAAACTCTGCCATCAGTTC CTCGTCACAGGAGTACTTCCCGACCTATCAGACACCACACACACACAGGCTGAGCAGTTTCCTCAAAGGTGTGAC AGAAACAAGCTACTACACGTCTGCCGTTCTCAACAAAGTTCCCACACCTCCTCCAGCTCATTCTGCCTAGAGAGG CTCGAGGTAGGGCTCGCTCAGGATCCCAGTGGCACTTGGGAGTTTTGCAGAAGACACATCATCAGTCATGACTTC CTTGCTGCGGAAAACCTGAACAGTCTAGACTCTCGTTCTCGAGCGCTCTTCGATGACTGCTTTCAGAGCCAGTCC GAGGTGACCAAGGCCTGCGAATCCATCCATGCTCCGGAAAGTCTCGAGCTGCCTGACTGCCACGGCGTCAAGGAC TACGAGCACGTCGTCCGCATATTCGGCGCCTCTCTCCAAGATGCCTGCAGCAGTCAGGATGCCGCCTCGACTGAG AACGAGATGCGAACTCTACAAGTCAAAACGAACAACAACGGCCTTGCCGCTTTCAAGTCCACCTGTGACTGCCAT AAGCTTCATTCAGCAGGCAACGAAGCTAACTCCGCCTCCCCCTCGTCTTCTTCTTTGTCACCCAACCCATCTTCC CTCACCACTCTCAGGGCCACCTCTTCTACGCAGATGTCTGCCCCGATCGAGTCCGACTCCCTGCCTACTACCCGC TTACCTGCCGCTCGTCGCTTCGACAGCCCGGCTTTCCCTCAGGACACAGCCCCTCCCGCTTCAGACGAGGCCACT GCAAAGAGCAAGATGCTCTATTCCCGCGCCAAGGCCAAGCCGCAGAAGTCATCTGCCGGCGCCGCTTCCTTCTCC GGGCCCTACAGTTCTCAGTCCTCACATGCGGTAACCCAAGAAAATCACCTCACGCAATCCGATATCAACTCTCTG CTTGAGCACTCGGATAAGTTCAAGTTCGAGATCCGCAATGGCCTCTGTGCCATTCACAGCATGCCTGACGAGGCC CGCCACGTCAGCTGGCGACTGATTTACGATCTGGACGTCAACGTCGAGTCCAAGCACAGGTTCCGCTTCGAGATC TGCAATCCGTCGGAGCATGGCCGTGTCGTGACCAAGATCCAAGGACAATACATCTATGGTTACGCTCTCGAGGTC AACGGCGGCGCCTCTGTCGCAGGCTCCGTCAACCCCAACGGTAAGAATGAGATTCTCTGCGACACTGGCAACCTG ACGTACGTCACCGTTCACGACAAAGGCATCATCGACGTCAGGCTGGCCGGCGAAGTCGTTGTCGAGAACAAGGGA GGCATCATCTTCAAATGCCAAAGCATCCACAACTGCGAGGAATCAAAGTGCCAAGCCGATGAATGCAATTCCAAC CTCATCGCCTCCATCACGCCTGAAGAGATTGCCTCATTAGAGGACGAAATTCCGGGTCCTGATGACCTTGATTTT GAGTCCGATTTTGATCCCGATGGCCAAGCTCAAGGTTCAGGCAACCGCACTCATCCTCGCCCAGGGTACGAGACT GGAGACCACCGAAATGATACCAGCAACGGTCCAGACTACGGTCCCGAGTACGGTCCTGGCAACAGCCCGGACTAC GGTCCCGGCAACGGTCCCGAGTACGGCCCCGGCACCGGCCCTGACTACGGTCCCGGCAACGGTCCCGAGTACGGC CCCGGCACCGGCCCTGACTATGGTCCCGGAAACGGTCCCGAGTACGGTCCCGAGTACGGTCCCGGCACCGGCCCT GACTATGGTCCCGGTAACGGTTCCGAGTACGGTGCCGGCAACGGTCCTGACTACGGTCCCGGCAACAGCCCTGGC ACTAGTCCCGACTACAATCCCGGCAACGGTCCCGAGTACGGCCCTGACCACGAGCCGGCGACCGGCCCTGAATAT GGTATAGGCCCTGGTGGCTCAGACACCCGCCCTGGAGGTCCTGGACCGGACTACGGTCTCGAGCCTGGGTCCGGG CCTGACAATGGCACCGACTACGATCCCGTTAATAATCCTGACTATGAGCCCGGAATGGGTCCTGGATACGGCATG GGCCCTGGTGGCTCTGATACCCGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGG CTCTGA |
Gene | >Ophio5|467 ATGAGACGCCTTCTCGCCCTTGGCCTCGCCACGGTCAGTCCCGTCGGCTTGGCTGAGGCTACCGCACATACGGAC GCTGCCTCGGCTCCCTCTCGATATCAAGCAGATAAGTTTGCTTCACATACGGCACACCTCGCCACACCCATTCGC TACGACGAGTGTCAAGATGCCATCGAGCAAAGGTTTCCCCATCGAGACGAGCGAACTAAACTCTGCCATCAGTTC CTCGTCACAGGAGTACTTCCCGACCTATCAGACACCACACACACACAGGCTGAGCAGTTTCCTCAAAGGTGTGAC AGAAACAAGCTACTACACGTCTGCCGTTCTCAACAAAGTTCCCACACCTCCTCCAGCTCATTCTGCCTAGAGAGG CTCGAGGTAGGGCTCGCTCAGGATCCCAGTGGCACTTGGGAGTTTTGCAGAAGACACATCATCAGTCATGACTTC CTTGCTGCGGAAAACCTGAACAGTCTAGACTCTCGTTCTCGAGCGCTCTTCGATGACTGCTTTCAGAGCCAGTCC GAGGTGACCAAGGCCTGCGAATCCATCCATGCTCCGGAAAGTCTCGAGCTGCCTGACTGCCACGGCGTCAAGGAC TACGAGCACGTCGTCCGCATATTCGGCGCCTCTCTCCAAGATGCCTGCAGCAGTCAGGATGCCGCCTCGACTGAG AACGAGATGCGAACTCTACAAGTCAAAACGAACAACAACGGCCTTGCCGCTTTCAAGTCCACCTGTGACTGCCAT AAGCTTCATTCAGCAGGCAACGAAGCTAACTCCGCCTCCCCCTCGTCTTCTTCTTTGTCACCCAACCCATCTTCC CTCACCACTCTCAGGGCCACCTCTTCTACGCAGATGTCTGCCCCGATCGAGTCCGACTCCCTGCCTACTACCCGC TTACCTGCCGCTCGTCGCTTCGACAGCCCGGCTTTCCCTCAGGACACAGCCCCTCCCGCTTCAGACGAGGCCACT GCAAAGAGCAAGATGCTCTATTCCCGCGCCAAGGCCAAGCCGCAGAAGTCATCTGCCGGCGCCGCTTCCTTCTCC GGGCCCTACAGTTCTCAGTCCTCACATGCGGTAACCCAAGAAAATCACCTCACGCAATCCGATATCAACTCTCTG CTTGAGCACTCGGATAAGTTCAAGTTCGAGATCCGCAATGGCCTCTGTGCCATTCACAGCATGCCTGACGAGGCC CGCCACGTCAGCTGGCGACTGATTTACGATCTGGACGTCAACGTCGAGTCCAAGCACAGGTTCCGCTTCGAGATC TGCAATCCGTCGGAGCATGGCCGTGTCGTGACCAAGATCCAAGGACAATACATCTATGGTTACGCTCTCGAGGTC AACGGCGGCGCCTCTGTCGCAGGCTCCGTCAACCCCAACGGTAAGAATGAGATTCTCTGCGACACTGGCAACCTG ACGTACGTCACCGTTCACGACAAAGGCATCATCGACGTCAGGCTGGCCGGCGAAGTCGTTGTCGAGAACAAGGGA GGCATCATCTTCAAATGCCAAAGCATCCACAACTGCGAGGAATCAAAGTGCCAAGCCGATGAATGCAATTCCAAC CTCATCGCCTCCATCACGCCTGAAGAGATTGCCTCATTAGAGGACGAAATTCCGGGTCCTGATGACCTTGATTTT GAGTCCGATTTTGATCCCGATGGCCAAGCTCAAGGTTCAGGCAACCGCACTCATCCTCGCCCAGGGTACGAGACT GGAGACCACCGAAATGATACCAGCAACGGTCCAGACTACGGTCCCGAGTACGGTCCTGGCAACAGCCCGGACTAC GGTCCCGGCAACGGTCCCGAGTACGGCCCCGGCACCGGCCCTGACTACGGTCCCGGCAACGGTCCCGAGTACGGC CCCGGCACCGGCCCTGACTATGGTCCCGGAAACGGTCCCGAGTACGGTCCCGAGTACGGTCCCGGCACCGGCCCT GACTATGGTCCCGGTAACGGTTCCGAGTACGGTGCCGGCAACGGTCCTGACTACGGTCCCGGCAACAGCCCTGGC ACTAGTCCCGACTACAATCCCGGCAACGGTCCCGAGTACGGCCCTGACCACGAGCCGGCGACCGGCCCTGAATAT GGTATAGGCCCTGGTGGCTCAGACACCCGCCCTGGAGGTCCTGGACCGGACTACGGTCTCGAGCCTGGGTCCGGG CCTGACAATGGCACCGACTACGATCCCGTTAATAATCCTGACTATGAGCCCGGAATGGGTCCTGGATACGGCATG GGCCCTGGTGGCTCTGATACCCGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGG CTCTGA |