Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|467
Gene name
Locationscaffold_1103:1109..3440
Strand+
Gene length (bp)2331
Transcript length (bp)2331
Coding sequence length (bp)2328
Protein length (aa) 776

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PFAM Domains

(None)

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|A2VD00|EIF3A_XENLA Eukaryotic translation initiation factor 3 subunit A OS=Xenopus laevis GN=eif3a PE=2 SV=1 581 750 5.0E-06

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 21 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|467
MRRLLALGLATVSPVGLAEATAHTDAASAPSRYQADKFASHTAHLATPIRYDECQDAIEQRFPHRDERTKLCHQF
LVTGVLPDLSDTTHTQAEQFPQRCDRNKLLHVCRSQQSSHTSSSSFCLERLEVGLAQDPSGTWEFCRRHIISHDF
LAAENLNSLDSRSRALFDDCFQSQSEVTKACESIHAPESLELPDCHGVKDYEHVVRIFGASLQDACSSQDAASTE
NEMRTLQVKTNNNGLAAFKSTCDCHKLHSAGNEANSASPSSSSLSPNPSSLTTLRATSSTQMSAPIESDSLPTTR
LPAARRFDSPAFPQDTAPPASDEATAKSKMLYSRAKAKPQKSSAGAASFSGPYSSQSSHAVTQENHLTQSDINSL
LEHSDKFKFEIRNGLCAIHSMPDEARHVSWRLIYDLDVNVESKHRFRFEICNPSEHGRVVTKIQGQYIYGYALEV
NGGASVAGSVNPNGKNEILCDTGNLTYVTVHDKGIIDVRLAGEVVVENKGGIIFKCQSIHNCEESKCQADECNSN
LIASITPEEIASLEDEIPGPDDLDFESDFDPDGQAQGSGNRTHPRPGYETGDHRNDTSNGPDYGPEYGPGNSPDY
GPGNGPEYGPGTGPDYGPGNGPEYGPGTGPDYGPGNGPEYGPEYGPGTGPDYGPGNGSEYGAGNGPDYGPGNSPG
TSPDYNPGNGPEYGPDHEPATGPEYGIGPGGSDTRPGGPGPDYGLEPGSGPDNGTDYDPVNNPDYEPGMGPGYGM
GPGGSDTRXXXXXXXXXXXXXXXXWL
Coding >Ophio5|467
ATGAGACGCCTTCTCGCCCTTGGCCTCGCCACGGTCAGTCCCGTCGGCTTGGCTGAGGCTACCGCACATACGGAC
GCTGCCTCGGCTCCCTCTCGATATCAAGCAGATAAGTTTGCTTCACATACGGCACACCTCGCCACACCCATTCGC
TACGACGAGTGTCAAGATGCCATCGAGCAAAGGTTTCCCCATCGAGACGAGCGAACTAAACTCTGCCATCAGTTC
CTCGTCACAGGAGTACTTCCCGACCTATCAGACACCACACACACACAGGCTGAGCAGTTTCCTCAAAGGTGTGAC
AGAAACAAGCTACTACACGTCTGCCGTTCTCAACAAAGTTCCCACACCTCCTCCAGCTCATTCTGCCTAGAGAGG
CTCGAGGTAGGGCTCGCTCAGGATCCCAGTGGCACTTGGGAGTTTTGCAGAAGACACATCATCAGTCATGACTTC
CTTGCTGCGGAAAACCTGAACAGTCTAGACTCTCGTTCTCGAGCGCTCTTCGATGACTGCTTTCAGAGCCAGTCC
GAGGTGACCAAGGCCTGCGAATCCATCCATGCTCCGGAAAGTCTCGAGCTGCCTGACTGCCACGGCGTCAAGGAC
TACGAGCACGTCGTCCGCATATTCGGCGCCTCTCTCCAAGATGCCTGCAGCAGTCAGGATGCCGCCTCGACTGAG
AACGAGATGCGAACTCTACAAGTCAAAACGAACAACAACGGCCTTGCCGCTTTCAAGTCCACCTGTGACTGCCAT
AAGCTTCATTCAGCAGGCAACGAAGCTAACTCCGCCTCCCCCTCGTCTTCTTCTTTGTCACCCAACCCATCTTCC
CTCACCACTCTCAGGGCCACCTCTTCTACGCAGATGTCTGCCCCGATCGAGTCCGACTCCCTGCCTACTACCCGC
TTACCTGCCGCTCGTCGCTTCGACAGCCCGGCTTTCCCTCAGGACACAGCCCCTCCCGCTTCAGACGAGGCCACT
GCAAAGAGCAAGATGCTCTATTCCCGCGCCAAGGCCAAGCCGCAGAAGTCATCTGCCGGCGCCGCTTCCTTCTCC
GGGCCCTACAGTTCTCAGTCCTCACATGCGGTAACCCAAGAAAATCACCTCACGCAATCCGATATCAACTCTCTG
CTTGAGCACTCGGATAAGTTCAAGTTCGAGATCCGCAATGGCCTCTGTGCCATTCACAGCATGCCTGACGAGGCC
CGCCACGTCAGCTGGCGACTGATTTACGATCTGGACGTCAACGTCGAGTCCAAGCACAGGTTCCGCTTCGAGATC
TGCAATCCGTCGGAGCATGGCCGTGTCGTGACCAAGATCCAAGGACAATACATCTATGGTTACGCTCTCGAGGTC
AACGGCGGCGCCTCTGTCGCAGGCTCCGTCAACCCCAACGGTAAGAATGAGATTCTCTGCGACACTGGCAACCTG
ACGTACGTCACCGTTCACGACAAAGGCATCATCGACGTCAGGCTGGCCGGCGAAGTCGTTGTCGAGAACAAGGGA
GGCATCATCTTCAAATGCCAAAGCATCCACAACTGCGAGGAATCAAAGTGCCAAGCCGATGAATGCAATTCCAAC
CTCATCGCCTCCATCACGCCTGAAGAGATTGCCTCATTAGAGGACGAAATTCCGGGTCCTGATGACCTTGATTTT
GAGTCCGATTTTGATCCCGATGGCCAAGCTCAAGGTTCAGGCAACCGCACTCATCCTCGCCCAGGGTACGAGACT
GGAGACCACCGAAATGATACCAGCAACGGTCCAGACTACGGTCCCGAGTACGGTCCTGGCAACAGCCCGGACTAC
GGTCCCGGCAACGGTCCCGAGTACGGCCCCGGCACCGGCCCTGACTACGGTCCCGGCAACGGTCCCGAGTACGGC
CCCGGCACCGGCCCTGACTATGGTCCCGGAAACGGTCCCGAGTACGGTCCCGAGTACGGTCCCGGCACCGGCCCT
GACTATGGTCCCGGTAACGGTTCCGAGTACGGTGCCGGCAACGGTCCTGACTACGGTCCCGGCAACAGCCCTGGC
ACTAGTCCCGACTACAATCCCGGCAACGGTCCCGAGTACGGCCCTGACCACGAGCCGGCGACCGGCCCTGAATAT
GGTATAGGCCCTGGTGGCTCAGACACCCGCCCTGGAGGTCCTGGACCGGACTACGGTCTCGAGCCTGGGTCCGGG
CCTGACAATGGCACCGACTACGATCCCGTTAATAATCCTGACTATGAGCCCGGAATGGGTCCTGGATACGGCATG
GGCCCTGGTGGCTCTGATACCCGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGG
CTC
Transcript >Ophio5|467
ATGAGACGCCTTCTCGCCCTTGGCCTCGCCACGGTCAGTCCCGTCGGCTTGGCTGAGGCTACCGCACATACGGAC
GCTGCCTCGGCTCCCTCTCGATATCAAGCAGATAAGTTTGCTTCACATACGGCACACCTCGCCACACCCATTCGC
TACGACGAGTGTCAAGATGCCATCGAGCAAAGGTTTCCCCATCGAGACGAGCGAACTAAACTCTGCCATCAGTTC
CTCGTCACAGGAGTACTTCCCGACCTATCAGACACCACACACACACAGGCTGAGCAGTTTCCTCAAAGGTGTGAC
AGAAACAAGCTACTACACGTCTGCCGTTCTCAACAAAGTTCCCACACCTCCTCCAGCTCATTCTGCCTAGAGAGG
CTCGAGGTAGGGCTCGCTCAGGATCCCAGTGGCACTTGGGAGTTTTGCAGAAGACACATCATCAGTCATGACTTC
CTTGCTGCGGAAAACCTGAACAGTCTAGACTCTCGTTCTCGAGCGCTCTTCGATGACTGCTTTCAGAGCCAGTCC
GAGGTGACCAAGGCCTGCGAATCCATCCATGCTCCGGAAAGTCTCGAGCTGCCTGACTGCCACGGCGTCAAGGAC
TACGAGCACGTCGTCCGCATATTCGGCGCCTCTCTCCAAGATGCCTGCAGCAGTCAGGATGCCGCCTCGACTGAG
AACGAGATGCGAACTCTACAAGTCAAAACGAACAACAACGGCCTTGCCGCTTTCAAGTCCACCTGTGACTGCCAT
AAGCTTCATTCAGCAGGCAACGAAGCTAACTCCGCCTCCCCCTCGTCTTCTTCTTTGTCACCCAACCCATCTTCC
CTCACCACTCTCAGGGCCACCTCTTCTACGCAGATGTCTGCCCCGATCGAGTCCGACTCCCTGCCTACTACCCGC
TTACCTGCCGCTCGTCGCTTCGACAGCCCGGCTTTCCCTCAGGACACAGCCCCTCCCGCTTCAGACGAGGCCACT
GCAAAGAGCAAGATGCTCTATTCCCGCGCCAAGGCCAAGCCGCAGAAGTCATCTGCCGGCGCCGCTTCCTTCTCC
GGGCCCTACAGTTCTCAGTCCTCACATGCGGTAACCCAAGAAAATCACCTCACGCAATCCGATATCAACTCTCTG
CTTGAGCACTCGGATAAGTTCAAGTTCGAGATCCGCAATGGCCTCTGTGCCATTCACAGCATGCCTGACGAGGCC
CGCCACGTCAGCTGGCGACTGATTTACGATCTGGACGTCAACGTCGAGTCCAAGCACAGGTTCCGCTTCGAGATC
TGCAATCCGTCGGAGCATGGCCGTGTCGTGACCAAGATCCAAGGACAATACATCTATGGTTACGCTCTCGAGGTC
AACGGCGGCGCCTCTGTCGCAGGCTCCGTCAACCCCAACGGTAAGAATGAGATTCTCTGCGACACTGGCAACCTG
ACGTACGTCACCGTTCACGACAAAGGCATCATCGACGTCAGGCTGGCCGGCGAAGTCGTTGTCGAGAACAAGGGA
GGCATCATCTTCAAATGCCAAAGCATCCACAACTGCGAGGAATCAAAGTGCCAAGCCGATGAATGCAATTCCAAC
CTCATCGCCTCCATCACGCCTGAAGAGATTGCCTCATTAGAGGACGAAATTCCGGGTCCTGATGACCTTGATTTT
GAGTCCGATTTTGATCCCGATGGCCAAGCTCAAGGTTCAGGCAACCGCACTCATCCTCGCCCAGGGTACGAGACT
GGAGACCACCGAAATGATACCAGCAACGGTCCAGACTACGGTCCCGAGTACGGTCCTGGCAACAGCCCGGACTAC
GGTCCCGGCAACGGTCCCGAGTACGGCCCCGGCACCGGCCCTGACTACGGTCCCGGCAACGGTCCCGAGTACGGC
CCCGGCACCGGCCCTGACTATGGTCCCGGAAACGGTCCCGAGTACGGTCCCGAGTACGGTCCCGGCACCGGCCCT
GACTATGGTCCCGGTAACGGTTCCGAGTACGGTGCCGGCAACGGTCCTGACTACGGTCCCGGCAACAGCCCTGGC
ACTAGTCCCGACTACAATCCCGGCAACGGTCCCGAGTACGGCCCTGACCACGAGCCGGCGACCGGCCCTGAATAT
GGTATAGGCCCTGGTGGCTCAGACACCCGCCCTGGAGGTCCTGGACCGGACTACGGTCTCGAGCCTGGGTCCGGG
CCTGACAATGGCACCGACTACGATCCCGTTAATAATCCTGACTATGAGCCCGGAATGGGTCCTGGATACGGCATG
GGCCCTGGTGGCTCTGATACCCGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGG
CTCTGA
Gene >Ophio5|467
ATGAGACGCCTTCTCGCCCTTGGCCTCGCCACGGTCAGTCCCGTCGGCTTGGCTGAGGCTACCGCACATACGGAC
GCTGCCTCGGCTCCCTCTCGATATCAAGCAGATAAGTTTGCTTCACATACGGCACACCTCGCCACACCCATTCGC
TACGACGAGTGTCAAGATGCCATCGAGCAAAGGTTTCCCCATCGAGACGAGCGAACTAAACTCTGCCATCAGTTC
CTCGTCACAGGAGTACTTCCCGACCTATCAGACACCACACACACACAGGCTGAGCAGTTTCCTCAAAGGTGTGAC
AGAAACAAGCTACTACACGTCTGCCGTTCTCAACAAAGTTCCCACACCTCCTCCAGCTCATTCTGCCTAGAGAGG
CTCGAGGTAGGGCTCGCTCAGGATCCCAGTGGCACTTGGGAGTTTTGCAGAAGACACATCATCAGTCATGACTTC
CTTGCTGCGGAAAACCTGAACAGTCTAGACTCTCGTTCTCGAGCGCTCTTCGATGACTGCTTTCAGAGCCAGTCC
GAGGTGACCAAGGCCTGCGAATCCATCCATGCTCCGGAAAGTCTCGAGCTGCCTGACTGCCACGGCGTCAAGGAC
TACGAGCACGTCGTCCGCATATTCGGCGCCTCTCTCCAAGATGCCTGCAGCAGTCAGGATGCCGCCTCGACTGAG
AACGAGATGCGAACTCTACAAGTCAAAACGAACAACAACGGCCTTGCCGCTTTCAAGTCCACCTGTGACTGCCAT
AAGCTTCATTCAGCAGGCAACGAAGCTAACTCCGCCTCCCCCTCGTCTTCTTCTTTGTCACCCAACCCATCTTCC
CTCACCACTCTCAGGGCCACCTCTTCTACGCAGATGTCTGCCCCGATCGAGTCCGACTCCCTGCCTACTACCCGC
TTACCTGCCGCTCGTCGCTTCGACAGCCCGGCTTTCCCTCAGGACACAGCCCCTCCCGCTTCAGACGAGGCCACT
GCAAAGAGCAAGATGCTCTATTCCCGCGCCAAGGCCAAGCCGCAGAAGTCATCTGCCGGCGCCGCTTCCTTCTCC
GGGCCCTACAGTTCTCAGTCCTCACATGCGGTAACCCAAGAAAATCACCTCACGCAATCCGATATCAACTCTCTG
CTTGAGCACTCGGATAAGTTCAAGTTCGAGATCCGCAATGGCCTCTGTGCCATTCACAGCATGCCTGACGAGGCC
CGCCACGTCAGCTGGCGACTGATTTACGATCTGGACGTCAACGTCGAGTCCAAGCACAGGTTCCGCTTCGAGATC
TGCAATCCGTCGGAGCATGGCCGTGTCGTGACCAAGATCCAAGGACAATACATCTATGGTTACGCTCTCGAGGTC
AACGGCGGCGCCTCTGTCGCAGGCTCCGTCAACCCCAACGGTAAGAATGAGATTCTCTGCGACACTGGCAACCTG
ACGTACGTCACCGTTCACGACAAAGGCATCATCGACGTCAGGCTGGCCGGCGAAGTCGTTGTCGAGAACAAGGGA
GGCATCATCTTCAAATGCCAAAGCATCCACAACTGCGAGGAATCAAAGTGCCAAGCCGATGAATGCAATTCCAAC
CTCATCGCCTCCATCACGCCTGAAGAGATTGCCTCATTAGAGGACGAAATTCCGGGTCCTGATGACCTTGATTTT
GAGTCCGATTTTGATCCCGATGGCCAAGCTCAAGGTTCAGGCAACCGCACTCATCCTCGCCCAGGGTACGAGACT
GGAGACCACCGAAATGATACCAGCAACGGTCCAGACTACGGTCCCGAGTACGGTCCTGGCAACAGCCCGGACTAC
GGTCCCGGCAACGGTCCCGAGTACGGCCCCGGCACCGGCCCTGACTACGGTCCCGGCAACGGTCCCGAGTACGGC
CCCGGCACCGGCCCTGACTATGGTCCCGGAAACGGTCCCGAGTACGGTCCCGAGTACGGTCCCGGCACCGGCCCT
GACTATGGTCCCGGTAACGGTTCCGAGTACGGTGCCGGCAACGGTCCTGACTACGGTCCCGGCAACAGCCCTGGC
ACTAGTCCCGACTACAATCCCGGCAACGGTCCCGAGTACGGCCCTGACCACGAGCCGGCGACCGGCCCTGAATAT
GGTATAGGCCCTGGTGGCTCAGACACCCGCCCTGGAGGTCCTGGACCGGACTACGGTCTCGAGCCTGGGTCCGGG
CCTGACAATGGCACCGACTACGATCCCGTTAATAATCCTGACTATGAGCCCGGAATGGGTCCTGGATACGGCATG
GGCCCTGGTGGCTCTGATACCCGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGG
CTCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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