© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ophio5|4667 |
| Gene name | |
| Location | scaffold_371:14123..15180 |
| Strand | - |
| Gene length (bp) | 1057 |
| Transcript length (bp) | 849 |
| Coding sequence length (bp) | 846 |
| Protein length (aa) | 282 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03661 | TMEM33_Pom33 | Transmembrane protein 33/Nucleoporin POM33 | 1.3E-30 | 9 | 257 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|G0S6T0|POM33_CHATD | Nucleoporin POM33 OS=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) GN=POM33 PE=3 SV=1 | 3 | 282 | 1.0E-114 |
| sp|Q12164|POM33_YEAST | Pore membrane protein of 33 kDa OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=POM33 PE=1 SV=1 | 3 | 256 | 5.0E-41 |
| sp|Q9Y7Z5|TTS1_SCHPO | Tetra-spanning protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tts1 PE=1 SV=1 | 1 | 262 | 2.0E-29 |
| sp|Q12144|PER33_YEAST | Pore and endoplasmic reticulum protein of 33 kDa OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PER33 PE=1 SV=1 | 1 | 257 | 9.0E-08 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005575 | cellular_component | No |
| GO:0031224 | intrinsic component of membrane | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 15 | 37 | 22 |
| 2 | 57 | 74 | 17 |
| 3 | 106 | 128 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|4667 MTPPPNSNMSLQQRLLALVKTLQFAWFIGHLTLIISTFRYSISWVRMNYYGTTAQASYRLSFAAAIVTYGIVVYK TQRARAKTGARTSGGLAGQLSDENVQYLLMALVWLFSPQYPLALMPYVVYSVFHVATYTRANLIPAFQSPPPPAA DGSARPRVSSPAADSIGGFVKNYYDASMSVVSALELLIWVRVLFSAILFQRRSWILLCLYTAFVRARYSQSSHVQ HSVAQLCARIDSLVGAQGTPPVARQVWDNVKNGTRQFHDATDMGKYVNAGGPVKKTS |
| Coding | >Ophio5|4667 ATGACGCCTCCGCCCAACTCCAACATGTCGCTCCAGCAGCGGCTTCTGGCTTTGGTCAAGACGCTGCAGTTCGCC TGGTTTATTGGACACTTGACGCTCATCATCTCCACGTTCCGATACAGCATTTCGTGGGTGCGAATGAATTACTAC GGTACCACGGCCCAGGCCTCGTACCGGCTCTCTTTCGCCGCCGCCATCGTCACATACGGCATCGTCGTCTACAAG ACGCAGCGTGCGCGCGCCAAGACGGGTGCCAGAACCTCGGGCGGTCTCGCCGGCCAGCTCTCGGACGAAAACGTG CAGTACCTACTCATGGCCCTCGTCTGGCTCTTCTCCCCCCAGTACCCCCTGGCGCTGATGCCCTACGTCGTCTAC TCCGTCTTCCACGTCGCCACCTACACTCGCGCCAATCTCATCCCGGCCTTCCAGTCGCCGCCGCCTCCTGCCGCC GACGGTTCTGCTCGGCCGCGAGTCTCCAGCCCTGCGGCTGACAGCATCGGTGGCTTCGTCAAGAACTACTACGAT GCCTCCATGTCCGTCGTCTCAGCACTGGAGCTGCTCATCTGGGTCCGCGTCTTGTTCTCGGCCATCCTCTTCCAG CGCAGGTCCTGGATCCTGCTCTGCCTCTACACGGCTTTCGTCCGCGCGCGCTACTCCCAGAGCTCCCACGTACAG CACTCGGTAGCTCAGCTCTGCGCCCGGATCGATTCTCTCGTCGGTGCTCAGGGCACCCCCCCGGTTGCGCGCCAG GTGTGGGACAACGTCAAGAACGGTACCCGGCAGTTCCACGACGCCACCGACATGGGCAAATACGTCAATGCCGGC GGCCCCGTCAAGAAGACGTCG |
| Transcript | >Ophio5|4667 ATGACGCCTCCGCCCAACTCCAACATGTCGCTCCAGCAGCGGCTTCTGGCTTTGGTCAAGACGCTGCAGTTCGCC TGGTTTATTGGACACTTGACGCTCATCATCTCCACGTTCCGATACAGCATTTCGTGGGTGCGAATGAATTACTAC GGTACCACGGCCCAGGCCTCGTACCGGCTCTCTTTCGCCGCCGCCATCGTCACATACGGCATCGTCGTCTACAAG ACGCAGCGTGCGCGCGCCAAGACGGGTGCCAGAACCTCGGGCGGTCTCGCCGGCCAGCTCTCGGACGAAAACGTG CAGTACCTACTCATGGCCCTCGTCTGGCTCTTCTCCCCCCAGTACCCCCTGGCGCTGATGCCCTACGTCGTCTAC TCCGTCTTCCACGTCGCCACCTACACTCGCGCCAATCTCATCCCGGCCTTCCAGTCGCCGCCGCCTCCTGCCGCC GACGGTTCTGCTCGGCCGCGAGTCTCCAGCCCTGCGGCTGACAGCATCGGTGGCTTCGTCAAGAACTACTACGAT GCCTCCATGTCCGTCGTCTCAGCACTGGAGCTGCTCATCTGGGTCCGCGTCTTGTTCTCGGCCATCCTCTTCCAG CGCAGGTCCTGGATCCTGCTCTGCCTCTACACGGCTTTCGTCCGCGCGCGCTACTCCCAGAGCTCCCACGTACAG CACTCGGTAGCTCAGCTCTGCGCCCGGATCGATTCTCTCGTCGGTGCTCAGGGCACCCCCCCGGTTGCGCGCCAG GTGTGGGACAACGTCAAGAACGGTACCCGGCAGTTCCACGACGCCACCGACATGGGCAAATACGTCAATGCCGGC GGCCCCGTCAAGAAGACGTCGTGA |
| Gene | >Ophio5|4667 ATGACGCCTCCGCCCAACTCCAACATGTCGCTCCAGCAGCGGCTTCTGGCTTTGGTCAAGACGCTGCAGTGTACG ACGTCACCCGTCCGAGTCCTTCCTACTACGGTTATCTTGCGTCGCTGACCTCACTTCTGTCTGGCTCTAGTCGCC TGGTTTATTGGGTGCGTCGGTCCCGGAGCTGGTGTTCCGCTGTTGCAGGCTTGCTGACGTATACGCTTTTCGGCA CAGACACTTGACGCTCATCATCTCCACGTTCCGATACAGCATTTCGTGGGTGCGAATGAATTACTACGGTACCAC GGCCCAGGCCTCGTACCGGCTCTCTTTCGCCGCCGCCATCGTCACATACGGCATCGTCGTCTACAAGACGCAGCG TGCGCGCGCCAAGACGGGTGCCAGAACCTCGGGCGGTCTCGCCGGCCAGCTCTCGGACGAAAACGTGCAGTACCT ACGTACGACAGCTCCATCCTGCCCCCTATCGCTGTAACTGACGGCGATGCCCATCTCTTTGTCTGCAGTCATGGC CCTCGTCTGGCTCTTCTCCCCCCAGTACCCCCTGGCGCTGATGCCCTACGTCGTCTACTCCGTCTTCCACGTCGC CACCTACACTCGCGCCAATCTCATCCCGGCCTTCCAGTCGCCGCCGCCTCCTGCCGCCGACGGTTCTGCTCGGCC GCGAGTCTCCAGCCCTGCGGCTGACAGCATCGGTGGCTTCGTCAAGAACTACTACGATGCCTCCATGTCCGTCGT CTCAGCACTGGAGCTGCTCATCTGGGTCCGCGTCTTGTTCTCGGCCATCCTCTTCCAGCGCAGGTCCTGGATCCT GCTCTGCCTCTACACGGCTTTCGTCCGCGCGCGCTACTCCCAGAGCTCCCACGTACAGCACTCGGTAGCTCAGCT CTGCGCCCGGATCGATTCTCTCGTCGGTGCTCAGGGCACCCCCCCGGTTGCGCGCCAGGTGTGGGACAACGTCAA GAACGGTACCCGGCAGTTCCACGACGCCACCGACATGGGCAAATACGTCAATGCCGGCGGCCCCGTCAAGAAGAC GTCGTGA |