Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|4662
Gene name
Locationscaffold_371:457..1318
Strand-
Gene length (bp)861
Transcript length (bp)795
Coding sequence length (bp)792
Protein length (aa) 264

Your browser does not support drawing a protein figure.

PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF07798 CCDC90-like Coiled-coil domain-containing protein 90-like 1.7E-56 89 263

Swissprot hits

[Show all]
Swissprot ID Swissprot Description Start End E-value
sp|P43557|FMP32_YEAST Protein FMP32, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FMP32 PE=1 SV=1 98 263 2.0E-45
sp|O14042|FMP32_SCHPO Protein fmp32, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=fmp32 PE=3 SV=1 55 264 3.0E-34
sp|Q10073|YAN8_SCHPO Uncharacterized CCDC90 family protein C3H1.08c, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC3H1.08c PE=3 SV=1 96 245 1.0E-17
sp|Q0P4J6|MCUR1_XENTR Mitochondrial calcium uniporter regulator 1 OS=Xenopus tropicalis GN=mcur1 PE=2 SV=1 33 262 9.0E-17
sp|Q9CXD6|MCUR1_MOUSE Mitochondrial calcium uniporter regulator 1 OS=Mus musculus GN=Mcur1 PE=1 SV=1 85 262 2.0E-14
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|P43557|FMP32_YEAST Protein FMP32, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FMP32 PE=1 SV=1 98 263 2.0E-45
sp|O14042|FMP32_SCHPO Protein fmp32, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=fmp32 PE=3 SV=1 55 264 3.0E-34
sp|Q10073|YAN8_SCHPO Uncharacterized CCDC90 family protein C3H1.08c, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC3H1.08c PE=3 SV=1 96 245 1.0E-17
sp|Q0P4J6|MCUR1_XENTR Mitochondrial calcium uniporter regulator 1 OS=Xenopus tropicalis GN=mcur1 PE=2 SV=1 33 262 9.0E-17
sp|Q9CXD6|MCUR1_MOUSE Mitochondrial calcium uniporter regulator 1 OS=Mus musculus GN=Mcur1 PE=1 SV=1 85 262 2.0E-14
sp|Q4V897|CC90B_RAT Coiled-coil domain-containing protein 90B, mitochondrial OS=Rattus norvegicus GN=Ccdc90b PE=2 SV=1 75 262 6.0E-14
sp|Q8C3X2|CC90B_MOUSE Coiled-coil domain-containing protein 90B, mitochondrial OS=Mus musculus GN=Ccdc90b PE=1 SV=1 75 262 6.0E-14
sp|Q96AQ8|MCUR1_HUMAN Mitochondrial calcium uniporter regulator 1 OS=Homo sapiens GN=MCUR1 PE=1 SV=1 85 262 2.0E-13
sp|Q6DJ87|CC90B_XENTR Coiled-coil domain-containing protein 90B, mitochondrial OS=Xenopus tropicalis GN=ccdc90b PE=2 SV=2 72 262 6.0E-13
sp|Q9GZT6|CC90B_HUMAN Coiled-coil domain-containing protein 90B, mitochondrial OS=Homo sapiens GN=CCDC90B PE=1 SV=2 75 262 5.0E-12
[Show less]

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 44 0.45

Transmembrane Domains

Domain # Start End Length
1 241 263 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|4662
MTEQAARLRLSSKPGDTSSLCAGMTSTRTAILPRFLLPQLSWCGPATIPRLAPWTVFRYEQPVARHRLRAMSWPR
GFHATALRRRDHHFDTLKFVRRLQSEGFTEEQSVAMMKVLNDVIEESIQNLTRTMVLREEAAKATYTQKVDFAKL
RSELLSADSSESNTTRSAHERLTNDIAKLSSRLRDEISRTQASVRLDLNLEKGRIREEAVGQELKIKETETKIEQ
EVAALREKLELVKFQTLQWLMGVCTGFAALLLGAWRLLM
Coding >Ophio5|4662
ATGACAGAACAAGCCGCGCGACTCCGTCTCAGCTCAAAACCAGGCGACACATCATCTCTTTGCGCAGGCATGACG
TCGACGAGAACAGCCATCCTTCCACGCTTCCTTCTCCCGCAGCTCAGCTGGTGCGGGCCGGCAACAATCCCCCGC
CTCGCGCCATGGACCGTCTTCCGTTATGAGCAGCCGGTGGCACGACACCGGCTGAGGGCCATGTCATGGCCGCGG
GGTTTCCACGCGACGGCATTGCGACGGCGCGATCATCATTTCGACACGCTCAAGTTTGTGCGACGTCTTCAAAGC
GAGGGTTTCACCGAGGAGCAATCCGTCGCCATGATGAAGGTGCTCAACGACGTAATCGAGGAAAGCATTCAAAAC
CTCACACGAACAATGGTACTCCGCGAAGAAGCCGCCAAAGCAACCTACACGCAAAAAGTCGACTTCGCCAAACTC
CGATCCGAGCTCCTCTCCGCCGACAGCAGCGAATCCAACACGACACGCAGCGCCCACGAACGACTGACCAACGAC
ATCGCCAAGCTATCGAGCCGACTACGCGATGAGATATCTCGTACCCAGGCCAGCGTCCGATTGGATCTCAACTTG
GAAAAAGGCCGGATTCGCGAGGAGGCCGTCGGGCAGGAGCTCAAGATCAAAGAGACGGAAACCAAGATTGAGCAG
GAGGTGGCGGCGTTGAGGGAAAAGTTGGAGCTCGTCAAGTTTCAGACGCTGCAGTGGCTTATGGGTGTTTGTACG
GGCTTCGCTGCTTTGTTGCTTGGTGCGTGGAGGCTTCTCATG
Transcript >Ophio5|4662
ATGACAGAACAAGCCGCGCGACTCCGTCTCAGCTCAAAACCAGGCGACACATCATCTCTTTGCGCAGGCATGACG
TCGACGAGAACAGCCATCCTTCCACGCTTCCTTCTCCCGCAGCTCAGCTGGTGCGGGCCGGCAACAATCCCCCGC
CTCGCGCCATGGACCGTCTTCCGTTATGAGCAGCCGGTGGCACGACACCGGCTGAGGGCCATGTCATGGCCGCGG
GGTTTCCACGCGACGGCATTGCGACGGCGCGATCATCATTTCGACACGCTCAAGTTTGTGCGACGTCTTCAAAGC
GAGGGTTTCACCGAGGAGCAATCCGTCGCCATGATGAAGGTGCTCAACGACGTAATCGAGGAAAGCATTCAAAAC
CTCACACGAACAATGGTACTCCGCGAAGAAGCCGCCAAAGCAACCTACACGCAAAAAGTCGACTTCGCCAAACTC
CGATCCGAGCTCCTCTCCGCCGACAGCAGCGAATCCAACACGACACGCAGCGCCCACGAACGACTGACCAACGAC
ATCGCCAAGCTATCGAGCCGACTACGCGATGAGATATCTCGTACCCAGGCCAGCGTCCGATTGGATCTCAACTTG
GAAAAAGGCCGGATTCGCGAGGAGGCCGTCGGGCAGGAGCTCAAGATCAAAGAGACGGAAACCAAGATTGAGCAG
GAGGTGGCGGCGTTGAGGGAAAAGTTGGAGCTCGTCAAGTTTCAGACGCTGCAGTGGCTTATGGGTGTTTGTACG
GGCTTCGCTGCTTTGTTGCTTGGTGCGTGGAGGCTTCTCATGTGA
Gene >Ophio5|4662
ATGACAGAACAAGCCGCGCGACTCCGTCTCAGCTCAAAACCAGGCGACACATCATCTCTTTGCGCAGGCATGACG
TCGACGAGAACAGCCATCCTTCCACGCTTCCTTCTCCCGCAGCTCAGCTGGTGCGGGCCGGCAACAATCCCCCGC
CTCGCGCCATGGACCGTCTTCCGTTATGAGCAGCCGGTGGCACGACACCGGCTGAGGGCCATGTCATGGCCGCGG
GGTTTCCACGCGACGGCATTGCGACGGCGCGATCATCATTTCGACACGCTCAAGTTTGTGCGACGTCTTCAAAGC
GAGGGTTTCACCGAGGAGCAATCCGTCGCCATGATGAAGGTGCTCAACGACGTAATCGAGGAAAGGTGAGTTTTT
GTATCATCATCGTCAACTATCGGCTCTTGGGAAGAAAGCCAACAAGCCATGACAAGCATTCAAAACCTCACACGA
ACAATGGTACTCCGCGAAGAAGCCGCCAAAGCAACCTACACGCAAAAAGTCGACTTCGCCAAACTCCGATCCGAG
CTCCTCTCCGCCGACAGCAGCGAATCCAACACGACACGCAGCGCCCACGAACGACTGACCAACGACATCGCCAAG
CTATCGAGCCGACTACGCGATGAGATATCTCGTACCCAGGCCAGCGTCCGATTGGATCTCAACTTGGAAAAAGGC
CGGATTCGCGAGGAGGCCGTCGGGCAGGAGCTCAAGATCAAAGAGACGGAAACCAAGATTGAGCAGGAGGTGGCG
GCGTTGAGGGAAAAGTTGGAGCTCGTCAAGTTTCAGACGCTGCAGTGGCTTATGGGTGTTTGTACGGGCTTCGCT
GCTTTGTTGCTTGGTGCGTGGAGGCTTCTCATGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail