© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|4652 |
| Gene name | |
| Location | scaffold_370:5061..5689 |
| Strand | + |
| Gene length (bp) | 628 |
| Transcript length (bp) | 456 |
| Coding sequence length (bp) | 453 |
| Protein length (aa) | 151 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02109 | DAD | DAD family | 4.3E-47 | 45 | 151 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P46967|DAD1_XENLA | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit dad1 OS=Xenopus laevis GN=dad1 PE=3 SV=1 | 52 | 150 | 8.0E-34 |
| sp|Q5RBB4|DAD1_PONAB | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 OS=Pongo abelii GN=DAD1 PE=3 SV=3 | 40 | 150 | 5.0E-33 |
| sp|P61805|DAD1_RAT | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 OS=Rattus norvegicus GN=Dad1 PE=3 SV=3 | 40 | 150 | 7.0E-33 |
| sp|P61804|DAD1_MOUSE | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 OS=Mus musculus GN=Dad1 PE=1 SV=3 | 40 | 150 | 7.0E-33 |
| sp|P61806|DAD1_MESAU | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 OS=Mesocricetus auratus GN=DAD1 PE=3 SV=3 | 40 | 150 | 7.0E-33 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P46967|DAD1_XENLA | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit dad1 OS=Xenopus laevis GN=dad1 PE=3 SV=1 | 52 | 150 | 8.0E-34 |
| sp|Q5RBB4|DAD1_PONAB | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 OS=Pongo abelii GN=DAD1 PE=3 SV=3 | 40 | 150 | 5.0E-33 |
| sp|P61805|DAD1_RAT | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 OS=Rattus norvegicus GN=Dad1 PE=3 SV=3 | 40 | 150 | 7.0E-33 |
| sp|P61804|DAD1_MOUSE | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 OS=Mus musculus GN=Dad1 PE=1 SV=3 | 40 | 150 | 7.0E-33 |
| sp|P61806|DAD1_MESAU | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 OS=Mesocricetus auratus GN=DAD1 PE=3 SV=3 | 40 | 150 | 7.0E-33 |
| sp|P61803|DAD1_HUMAN | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 OS=Homo sapiens GN=DAD1 PE=1 SV=3 | 40 | 150 | 7.0E-33 |
| sp|Q29036|DAD1_PIG | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 OS=Sus scrofa GN=DAD1 PE=3 SV=3 | 40 | 150 | 7.0E-33 |
| sp|Q5E9C2|DAD1_BOVIN | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 OS=Bos taurus GN=DAD1 PE=3 SV=3 | 40 | 150 | 1.0E-32 |
| sp|O13113|DAD1_CHICK | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 OS=Gallus gallus GN=DAD1 PE=2 SV=1 | 29 | 151 | 1.0E-31 |
| sp|Q9VLM5|DAD1_DROME | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 OS=Drosophila melanogaster GN=l(2)k12914 PE=3 SV=1 | 43 | 150 | 6.0E-31 |
| sp|P52872|DAD1_CAEEL | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit dad-1 OS=Caenorhabditis elegans GN=dad-1 PE=3 SV=1 | 40 | 150 | 1.0E-29 |
| sp|Q8I7Z2|DAD1_ARAVE | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 OS=Araneus ventricosus GN=DAD1 PE=2 SV=1 | 46 | 150 | 3.0E-27 |
| sp|Q54FB6|DAD1_DICDI | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Dictyostelium discoideum GN=ost2 PE=3 SV=1 | 29 | 150 | 7.0E-26 |
| sp|Q9M3T9|DAD1_BETPN | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 OS=Betula pendula GN=DAD1 PE=3 SV=1 | 36 | 150 | 6.0E-25 |
| sp|Q39080|DAD1_ARATH | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 OS=Arabidopsis thaliana GN=DAD1 PE=2 SV=2 | 46 | 150 | 2.0E-23 |
| sp|Q9ZWQ7|DAD1_CITUN | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 OS=Citrus unshiu GN=DAD1 PE=3 SV=1 | 36 | 150 | 6.0E-23 |
| sp|P46964|OST2_YEAST | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit OST2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=OST2 PE=1 SV=3 | 30 | 151 | 7.0E-23 |
| sp|O65085|DAD1_PICMA | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 OS=Picea mariana GN=DAD1 PE=3 SV=1 | 45 | 150 | 8.0E-23 |
| sp|O22622|DAD2_ARATH | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD2 OS=Arabidopsis thaliana GN=DAD2 PE=2 SV=1 | 58 | 150 | 2.0E-22 |
| sp|O24060|DAD1_MALDO | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 OS=Malus domestica GN=DAD1 PE=3 SV=1 | 45 | 150 | 5.0E-22 |
| sp|Q9SME8|DAD2_HORVU | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD2 OS=Hordeum vulgare GN=DAD2 PE=3 SV=1 | 40 | 150 | 1.0E-21 |
| sp|Q9SMC4|DAD1_SOLLC | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 OS=Solanum lycopersicum GN=DAD1 PE=3 SV=1 | 45 | 150 | 2.0E-21 |
| sp|Q9ZRA3|DAD1_PEA | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 OS=Pisum sativum GN=DAD1 PE=3 SV=1 | 29 | 150 | 2.0E-21 |
| sp|Q0JDK9|DAD1_ORYSJ | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 OS=Oryza sativa subsp. japonica GN=DAD1 PE=3 SV=1 | 58 | 150 | 4.0E-21 |
| sp|A2XSY1|DAD1_ORYSI | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 OS=Oryza sativa subsp. indica GN=DAD1 PE=3 SV=1 | 58 | 150 | 4.0E-21 |
| sp|Q9SME9|DAD1_HORVU | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 OS=Hordeum vulgare GN=DAD1 PE=3 SV=1 | 39 | 150 | 4.0E-21 |
| sp|O14238|OST2_SCHPO | Probable dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit ost2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ost2 PE=3 SV=1 | 54 | 150 | 1.0E-16 |
| sp|O81214|DAD1_MAIZE | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 (Fragment) OS=Zea mays GN=DAD1 PE=2 SV=2 | 78 | 150 | 3.0E-16 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0008250 | oligosaccharyltransferase complex | Yes |
| GO:0098796 | membrane protein complex | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0140534 | endoplasmic reticulum protein-containing complex | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0032991 | protein-containing complex | No |
| GO:0005575 | cellular_component | No |
| GO:1990234 | transferase complex | No |
| GO:1902494 | catalytic complex | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 67 | 89 | 22 |
| 2 | 131 | 150 | 19 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 127.91 | 63.14 | 192.68 |
| CcL | In ants, during behavior modification | 121.32 | 57.96 | 184.68 |
| CcD | In ants, recently dead | 189.63 | 101.14 | 278.12 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.870452 | no |
| SC16a | CcD | 0.095809 | no |
| CcL | CcD | 0.066256 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|4652 MAPKKNARDTTASPARTVSSGASTPTSAMKQPASSAKGGAATWSAVLRNLQQHYVKETPQRTKLTDVFLAYLVFV GAVQFLYCVVAGNFPFNAFLSGFGATVGQFVLTVSLRIQTTEGNKGNFSAVSPERAFADYVVCSLFLHFFCVNFI N |
| Coding | >Ophio5|4652 ATGGCGCCCAAGAAGAACGCCCGCGACACCACAGCCTCTCCGGCTAGAACCGTCTCCTCTGGCGCCTCGACGCCC ACTTCGGCCATGAAGCAGCCTGCATCGTCGGCCAAAGGCGGTGCCGCCACCTGGAGCGCCGTTCTCCGCAACCTT CAGCAGCACTACGTCAAAGAGACACCCCAGCGCACAAAGCTCACAGATGTCTTCCTCGCCTATCTGGTCTTCGTC GGCGCCGTGCAGTTTCTCTATTGCGTTGTGGCTGGCAACTTTCCCTTCAACGCCTTTCTCTCTGGCTTTGGCGCG ACGGTTGGACAGTTTGTCCTGACAGTTTCGTTACGCATTCAGACGACCGAGGGCAATAAGGGCAACTTTTCAGCT GTGTCTCCGGAAAGAGCCTTCGCCGACTACGTTGTTTGCAGCCTCTTCTTGCACTTCTTCTGCGTCAACTTCATC AAC |
| Transcript | >Ophio5|4652 ATGGCGCCCAAGAAGAACGCCCGCGACACCACAGCCTCTCCGGCTAGAACCGTCTCCTCTGGCGCCTCGACGCCC ACTTCGGCCATGAAGCAGCCTGCATCGTCGGCCAAAGGCGGTGCCGCCACCTGGAGCGCCGTTCTCCGCAACCTT CAGCAGCACTACGTCAAAGAGACACCCCAGCGCACAAAGCTCACAGATGTCTTCCTCGCCTATCTGGTCTTCGTC GGCGCCGTGCAGTTTCTCTATTGCGTTGTGGCTGGCAACTTTCCCTTCAACGCCTTTCTCTCTGGCTTTGGCGCG ACGGTTGGACAGTTTGTCCTGACAGTTTCGTTACGCATTCAGACGACCGAGGGCAATAAGGGCAACTTTTCAGCT GTGTCTCCGGAAAGAGCCTTCGCCGACTACGTTGTTTGCAGCCTCTTCTTGCACTTCTTCTGCGTCAACTTCATC AACTAG |
| Gene | >Ophio5|4652 ATGGCGCCCAAGAAGAACGCCCGCGACACCACAGCCTCTCCGGCTAGAACCGTCTCCTCTGGCGCCTCGACGCCC ACTTCGGCCATGAAGCAGCCTGCATCGTCGGCCAAAGGCGGTGCCGCCACCTGGAGCGCCGTTCTCCGCAACCTT CAGCAGCACTACGTCAAAGAGACACCCCAGCGCACAAAGCTCACAGATGTCTTCCTCGCCTATCTGGTCTTCGTC GGCGCCGTGCAGTTTCTCTATTGCGTTGTGGCTGGCAACTTTGTACGTGCAGAGAGCGGAAGTCATGAATCCGCT TTCTTGGGTGCTGACCATCCCCAGCCCTTCAACGCCTTTCTCTCTGGCTTTGGCGCGACGGTTGGACAGTTTGTC CTGACAGGTGTGGTGCCCATACCCATCCTTCACCATCGGCTTGCTCACACATATCACAGTTTCGTTACGCATTCA GACGACCGAGGGCAATAAGGGCAACTTTTCAGCTGTGTCTCCGGAAAGGTGAGTGCGGAGCTTTTTGGCCCTAAC TTGGCTTTCAGTTCTTACTGACGATTGTCTTTGCAGAGCCTTCGCCGACTACGTTGTTTGCAGCCTCTTCTTGCA CTTCTTCTGCGTCAACTTCATCAACTAG |