© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|4543 |
| Gene name | |
| Location | scaffold_360:593..3223 |
| Strand | + |
| Gene length (bp) | 2630 |
| Transcript length (bp) | 2493 |
| Coding sequence length (bp) | 2490 |
| Protein length (aa) | 830 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF09511 | RNA_lig_T4_1 | RNA ligase | 2.9E-87 | 112 | 344 |
| PF08302 | tRNA_lig_CPD | Fungal tRNA ligase phosphodiesterase domain | 3.7E-66 | 602 | 827 |
| PF08303 | tRNA_lig_kinase | tRNA ligase kinase domain | 8.2E-49 | 442 | 599 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P09880|TRNL_YEAST | tRNA ligase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRL1 PE=1 SV=1 | 63 | 798 | 2.0E-159 |
| sp|Q10313|TRNL_SCHPO | tRNA ligase 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=trl1 PE=3 SV=2 | 78 | 798 | 3.0E-159 |
| sp|P43075|TRNL_CANAL | tRNA ligase OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=LIG1 PE=3 SV=2 | 87 | 802 | 3.0E-127 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003972 | RNA ligase (ATP) activity | Yes |
| GO:0006388 | tRNA splicing, via endonucleolytic cleavage and ligation | Yes |
| GO:0005524 | ATP binding | Yes |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0030554 | adenyl nucleotide binding | No |
| GO:0009987 | cellular process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0005488 | binding | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0032555 | purine ribonucleotide binding | No |
| GO:0003674 | molecular_function | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0043167 | ion binding | No |
| GO:0017076 | purine nucleotide binding | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0008033 | tRNA processing | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0008380 | RNA splicing | No |
| GO:0043168 | anion binding | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0032559 | adenyl ribonucleotide binding | No |
| GO:0140640 | catalytic activity, acting on a nucleic acid | No |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0008452 | RNA ligase activity | No |
| GO:0006399 | tRNA metabolic process | No |
| GO:0035639 | purine ribonucleoside triphosphate binding | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0000394 | RNA splicing, via endonucleolytic cleavage and ligation | No |
| GO:0003824 | catalytic activity | No |
| GO:0034660 | ncRNA metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0140098 | catalytic activity, acting on RNA | No |
| GO:0034470 | ncRNA processing | No |
| GO:0036094 | small molecule binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0097367 | carbohydrate derivative binding | No |
| GO:0006396 | RNA processing | No |
| GO:0016070 | RNA metabolic process | No |
| GO:0000166 | nucleotide binding | No |
| GO:0032553 | ribonucleotide binding | No |
| GO:0016874 | ligase activity | No |
| GO:0016886 | ligase activity, forming phosphoric ester bonds | No |
| GO:1901363 | heterocyclic compound binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 25 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|4543 MNVVSRSAQRLLSLRHCRVVPSMAAPPPTTHLATQHIPGQVQSLATVAPQANEESLAPVMEFLENGLKKKNKFAI LSRKTTFDVKSSRDGIKLDSWRLREHDYKRQWLPTYARGLFTTKRKDGTPEIAVRGYDKFFNIGEVRHTKWENII TQTKPPYDLTLKENGCIIFFAGLEDGTLVVCSKHSTGDRPNCVSHANAGEALLEKQLAAIGKTKEEFARELRERN ATAVAELCDDSFEEHILAYEPEKAGLYLHGINHNLPIFSTYASSDVQDFADQWGFRKIGFITMNDVKSVKAFLEE TARTGAYEGRDIEGFVIRCKMSTEPEVKPYQDWFFKFKFDEPYLMYRQWREVTKMMISGKEPTYKRHKLITGKYL EFARKRLAADPELGRRYLENHGIIALRNDFLRAENLKGSEAADMDEPAGVKDKPKVEIMSDVTGNVILCPVATIG CGKTTCAMALSQLFGWGHVQNDNIAGRNRPPRFTRAVLEGLKGRPAVFADRNNTEKRERLQLLRDLKEKNGQVKV VCLHYVHDEANMDNIRQLTTQRVKLRGDNHQTIKAARDPEKQETIMGGFLGRYEPCEPWSHPDSGFDLVIDLDPL ADSRVNLETIVTQLHKYFPHLMNLPSSEQLDSAIKHALEHKIPQSEPMRQKKGRDYWVHNLHYMSVNVESKAVNE ALQQAFEAADEQTSGFFKKLKLTGRVQKDFHVTLIHRSSSKDYPELWQRYMNALEPVEGDDGKIGECSVVLERIV FDDRIMAIVVRLVDEEGKWECVNRVAHITVGTRDASIKAKESNDLLAKWLDGGVKKGLMQELVFEQKPTIAGNVG AVRLR |
| Coding | >Ophio5|4543 ATGAACGTCGTATCAAGGTCTGCGCAAAGACTGCTTTCACTGCGTCACTGTCGCGTCGTTCCAAGCATGGCGGCG CCGCCGCCCACAACTCACCTTGCCACTCAACACATTCCCGGGCAAGTCCAGTCTCTGGCCACTGTCGCTCCACAA GCCAATGAAGAAAGCTTGGCCCCTGTTATGGAGTTCCTTGAAAACGGTCTCAAGAAGAAGAATAAGTTCGCTATT TTATCACGTAAGACAACTTTCGACGTCAAATCATCTCGTGACGGCATCAAGCTCGACTCATGGAGGCTTCGCGAG CACGATTACAAGAGGCAGTGGTTACCCACTTACGCCCGAGGACTCTTTACAACCAAGAGGAAAGACGGCACCCCT GAGATCGCTGTTAGGGGTTACGATAAGTTCTTCAACATTGGTGAGGTCAGACATACCAAGTGGGAAAATATCATT ACCCAGACGAAGCCGCCGTACGACCTGACTCTCAAGGAAAACGGCTGCATCATCTTCTTTGCTGGCCTCGAGGAC GGAACACTTGTCGTTTGCAGCAAGCACTCGACCGGCGACCGACCCAACTGCGTGAGCCATGCTAATGCTGGCGAG GCTCTCTTGGAGAAACAACTGGCAGCCATTGGCAAGACCAAGGAGGAATTTGCGCGCGAGCTCCGCGAGAGGAAC GCTACCGCCGTCGCCGAGCTCTGCGACGACTCCTTCGAAGAGCACATTCTCGCGTATGAACCAGAGAAAGCCGGC CTATACCTTCACGGCATTAACCACAACTTGCCCATCTTTTCCACCTATGCCAGCTCTGACGTCCAAGATTTTGCC GACCAGTGGGGTTTTCGCAAAATTGGATTCATCACCATGAACGACGTGAAGTCCGTCAAGGCATTCCTCGAAGAG ACGGCCCGAACGGGAGCTTACGAAGGCCGGGACATTGAGGGCTTCGTTATTCGCTGCAAGATGAGTACCGAACCG GAAGTCAAGCCCTATCAAGACTGGTTCTTCAAGTTCAAGTTCGATGAGCCATATCTCATGTATCGGCAATGGCGC GAGGTGACGAAAATGATGATCAGCGGGAAAGAGCCTACCTACAAGAGGCACAAGTTAATCACGGGGAAATACCTT GAGTTCGCTCGCAAACGGCTGGCTGCCGATCCAGAGCTAGGCCGGCGGTATCTGGAGAATCATGGCATTATTGCC CTGCGCAATGACTTTCTTCGAGCCGAAAATCTGAAAGGCTCCGAGGCGGCTGACATGGACGAACCGGCAGGAGTC AAGGACAAACCGAAAGTAGAGATCATGTCCGACGTTACTGGAAACGTGATTTTGTGCCCGGTGGCAACGATAGGC TGCGGCAAGACAACCTGCGCCATGGCGCTGTCTCAACTCTTCGGATGGGGCCATGTACAGAACGACAACATAGCC GGCAGAAATCGTCCGCCCAGGTTTACCCGTGCTGTTCTCGAAGGGCTGAAGGGGCGCCCGGCCGTCTTCGCAGAC CGGAATAACACGGAAAAGAGAGAAAGATTACAGCTTCTAAGGGACTTGAAGGAAAAGAACGGCCAGGTCAAGGTG GTTTGTCTCCACTATGTCCATGACGAGGCAAACATGGACAATATTCGACAGTTGACCACACAGAGGGTGAAGCTT CGCGGCGATAACCACCAGACAATCAAGGCCGCCAGGGATCCGGAGAAGCAGGAGACCATCATGGGTGGCTTTTTG GGACGATACGAGCCCTGTGAACCGTGGAGTCATCCCGACTCGGGGTTCGACTTGGTCATCGACCTGGATCCTCTG GCTGACAGCCGCGTAAATCTCGAGACGATCGTGACGCAGCTACACAAGTATTTCCCGCACTTGATGAATTTACCG TCATCGGAGCAGCTGGACAGTGCCATCAAACATGCACTCGAACACAAGATTCCGCAATCCGAACCAATGCGCCAG AAAAAGGGACGGGATTATTGGGTTCACAACTTGCACTACATGTCGGTGAATGTCGAGAGCAAGGCCGTCAATGAA GCCCTCCAACAGGCTTTTGAAGCCGCCGACGAACAGACTAGCGGCTTCTTCAAGAAGCTGAAGTTGACTGGAAGG GTTCAGAAAGACTTTCACGTCACGCTCATACATCGTTCATCCTCGAAGGACTATCCGGAGCTGTGGCAGCGATAT ATGAATGCGTTGGAACCCGTTGAAGGGGACGATGGGAAGATTGGCGAATGCAGTGTAGTACTCGAACGGATTGTG TTTGATGATCGCATCATGGCCATTGTGGTCCGTTTGGTGGACGAGGAAGGGAAGTGGGAGTGCGTGAACCGGGTT GCTCACATCACAGTCGGCACTCGGGATGCGTCGATCAAGGCCAAGGAAAGCAACGACTTGCTGGCCAAGTGGCTA GACGGGGGAGTCAAGAAGGGCCTGATGCAAGAGCTTGTCTTTGAGCAGAAGCCGACGATCGCAGGCAATGTCGGG GCTGTGCGTCTTAGA |
| Transcript | >Ophio5|4543 ATGAACGTCGTATCAAGGTCTGCGCAAAGACTGCTTTCACTGCGTCACTGTCGCGTCGTTCCAAGCATGGCGGCG CCGCCGCCCACAACTCACCTTGCCACTCAACACATTCCCGGGCAAGTCCAGTCTCTGGCCACTGTCGCTCCACAA GCCAATGAAGAAAGCTTGGCCCCTGTTATGGAGTTCCTTGAAAACGGTCTCAAGAAGAAGAATAAGTTCGCTATT TTATCACGTAAGACAACTTTCGACGTCAAATCATCTCGTGACGGCATCAAGCTCGACTCATGGAGGCTTCGCGAG CACGATTACAAGAGGCAGTGGTTACCCACTTACGCCCGAGGACTCTTTACAACCAAGAGGAAAGACGGCACCCCT GAGATCGCTGTTAGGGGTTACGATAAGTTCTTCAACATTGGTGAGGTCAGACATACCAAGTGGGAAAATATCATT ACCCAGACGAAGCCGCCGTACGACCTGACTCTCAAGGAAAACGGCTGCATCATCTTCTTTGCTGGCCTCGAGGAC GGAACACTTGTCGTTTGCAGCAAGCACTCGACCGGCGACCGACCCAACTGCGTGAGCCATGCTAATGCTGGCGAG GCTCTCTTGGAGAAACAACTGGCAGCCATTGGCAAGACCAAGGAGGAATTTGCGCGCGAGCTCCGCGAGAGGAAC GCTACCGCCGTCGCCGAGCTCTGCGACGACTCCTTCGAAGAGCACATTCTCGCGTATGAACCAGAGAAAGCCGGC CTATACCTTCACGGCATTAACCACAACTTGCCCATCTTTTCCACCTATGCCAGCTCTGACGTCCAAGATTTTGCC GACCAGTGGGGTTTTCGCAAAATTGGATTCATCACCATGAACGACGTGAAGTCCGTCAAGGCATTCCTCGAAGAG ACGGCCCGAACGGGAGCTTACGAAGGCCGGGACATTGAGGGCTTCGTTATTCGCTGCAAGATGAGTACCGAACCG GAAGTCAAGCCCTATCAAGACTGGTTCTTCAAGTTCAAGTTCGATGAGCCATATCTCATGTATCGGCAATGGCGC GAGGTGACGAAAATGATGATCAGCGGGAAAGAGCCTACCTACAAGAGGCACAAGTTAATCACGGGGAAATACCTT GAGTTCGCTCGCAAACGGCTGGCTGCCGATCCAGAGCTAGGCCGGCGGTATCTGGAGAATCATGGCATTATTGCC CTGCGCAATGACTTTCTTCGAGCCGAAAATCTGAAAGGCTCCGAGGCGGCTGACATGGACGAACCGGCAGGAGTC AAGGACAAACCGAAAGTAGAGATCATGTCCGACGTTACTGGAAACGTGATTTTGTGCCCGGTGGCAACGATAGGC TGCGGCAAGACAACCTGCGCCATGGCGCTGTCTCAACTCTTCGGATGGGGCCATGTACAGAACGACAACATAGCC GGCAGAAATCGTCCGCCCAGGTTTACCCGTGCTGTTCTCGAAGGGCTGAAGGGGCGCCCGGCCGTCTTCGCAGAC CGGAATAACACGGAAAAGAGAGAAAGATTACAGCTTCTAAGGGACTTGAAGGAAAAGAACGGCCAGGTCAAGGTG GTTTGTCTCCACTATGTCCATGACGAGGCAAACATGGACAATATTCGACAGTTGACCACACAGAGGGTGAAGCTT CGCGGCGATAACCACCAGACAATCAAGGCCGCCAGGGATCCGGAGAAGCAGGAGACCATCATGGGTGGCTTTTTG GGACGATACGAGCCCTGTGAACCGTGGAGTCATCCCGACTCGGGGTTCGACTTGGTCATCGACCTGGATCCTCTG GCTGACAGCCGCGTAAATCTCGAGACGATCGTGACGCAGCTACACAAGTATTTCCCGCACTTGATGAATTTACCG TCATCGGAGCAGCTGGACAGTGCCATCAAACATGCACTCGAACACAAGATTCCGCAATCCGAACCAATGCGCCAG AAAAAGGGACGGGATTATTGGGTTCACAACTTGCACTACATGTCGGTGAATGTCGAGAGCAAGGCCGTCAATGAA GCCCTCCAACAGGCTTTTGAAGCCGCCGACGAACAGACTAGCGGCTTCTTCAAGAAGCTGAAGTTGACTGGAAGG GTTCAGAAAGACTTTCACGTCACGCTCATACATCGTTCATCCTCGAAGGACTATCCGGAGCTGTGGCAGCGATAT ATGAATGCGTTGGAACCCGTTGAAGGGGACGATGGGAAGATTGGCGAATGCAGTGTAGTACTCGAACGGATTGTG TTTGATGATCGCATCATGGCCATTGTGGTCCGTTTGGTGGACGAGGAAGGGAAGTGGGAGTGCGTGAACCGGGTT GCTCACATCACAGTCGGCACTCGGGATGCGTCGATCAAGGCCAAGGAAAGCAACGACTTGCTGGCCAAGTGGCTA GACGGGGGAGTCAAGAAGGGCCTGATGCAAGAGCTTGTCTTTGAGCAGAAGCCGACGATCGCAGGCAATGTCGGG GCTGTGCGTCTTAGATGA |
| Gene | >Ophio5|4543 ATGAACGTCGTATCAAGGTCTGCGCAAAGACTGTAAGCTCTCCTTGCCAATGCCTCGCCGCACTCGCGCCAGAAA AGGTCATACCTCTAAACCCTCGTCCAGGCTTTCACTGCGTCACTGTCGCGTCGTTCCAAGCATGGCGGCGCCGCC GCCCACAACTCACCTTGCCACTCAACACATTCCCGGGCAAGTCCAGTCTCTGGCCACTGTCGCTCCACAAGCCAA TGAAGAAAGCTTGGCCCCTGTTATGGAGTTCCTTGAAAACGGTCTCAAGAAGAAGAATAAGTTCGCTATTTTATC ACGTAAGACAACTTTCGACGTCAAATCATCTCGTGACGGCATCAAGCTCGACTCATGGAGGCTTCGCGAGCACGA TTACAAGAGGCAGTGGTTACCCACTTACGCCCGAGGACTCTTTACAACCAAGAGGAAAGACGGCACCCCTGAGAT CGCTGTTAGGGGTTACGATAAGTTCTTCAACATTGGTGAGGTCAGACATACCAAGTGGGAAAATATCATTACCCA GACGAAGCCGCCGTACGACCTGACTCTCAAGGAAAACGGCTGCATCATCTTCTTTGCTGGCCTCGAGGACGGAAC ACTTGTCGTTTGCAGCAAGCACTCGACCGGCGACCGACCCAACTGCGTGAGCCATGCTAATGCTGGCGAGGCTCT CTTGGAGAAACAACTGGCAGCCATTGGCAAGACCAAGGAGGAATTTGCGCGCGAGCTCCGCGAGAGGAACGCTAC CGCCGTCGCCGAGCTCTGCGACGACTCCTTCGAAGAGCACATTCTCGCGTATGAACCAGAGAAAGCCGGCCTATA CCTTCACGGCATTAACCACAACTTGCCCATCTTTTCCACCTATGCCAGCTCTGACGTCCAAGATTTTGCCGACCA GTGGGGTTTTCGCAAAATTGGATTCATCACCATGAACGACGTGAAGTCCGTCAAGGCATTCCTCGAAGAGACGGC CCGAACGGGAGCTTACGAAGGCCGGGACATTGAGGGCTTCGTTATTCGCTGCAAGATGAGTACCGAACCGGAAGT CAAGCCCTATCAAGACTGGTTCTTCAAGTTCAAGTTCGATGAGCCATATCTCATGTATCGGCAATGGCGCGAGGT GACGAAAATGATGATCAGCGGGAAAGAGCCTACCTACAAGAGGCACAAGTTAATCACGGGGAAATACCTTGAGTT CGCTCGCAAACGGCTGGCTGCCGATCCAGAGCTAGGCCGGCGGTATCTGGAGAATCATGGCATTATTGCCCTGCG CAATGACTTTCTTCGAGCCGAAAATCTGAAAGGCTCCGAGGCGGCTGACATGGACGAACCGGCAGGAGTCAAGGA CAAACCGAAAGTAGAGATCATGTCCGACGTTACTGGAAACGTGATTTTGTGCCCGGTGGCAACGATAGGCTGCGG CAAGACAACCTGCGCCATGGCGCTGTCTCAACTCTTCGGATGGGGCCATGTACAGAACGACAACATAGCCGGCAG AAATCGTCCGCCCAGGTTTACCCGTGCTGTTCTCGAAGGGCTGAAGGGGCGCCCGGCCGTCTTCGCAGACCGGAA TAACACGGAAAAGAGAGAAAGATTACAGCTTCTAAGGGACTTGAAGGAAAAGAACGGCCAGGTCAAGGTGGTTTG TCTCCACTATGTCCATGACGAGGCAAACATGGACAATATTCGACAGTTGACCACACAGAGGGTGAAGCTTCGCGG CGATAACCACCAGACAATCAAGGCCGCCAGGGATCCGGAGAAGCAGGAGACCATCATGGGTGGCTTTTTGGGACG ATACGAGCCCTGTGAACCGTGGAGTCATCCCGACTCGGGGTTCGACTTGGTCATCGACCTGGATCCTCTGGCTGA CAGCCGCGTAAATCTCGAGACGATCGTGACGCAGCTACACAAGTATTTCCCGCACTTGATGAATTTACCGTCATC GGAGCAGCTGGACAGTGCCATCAAACATGCACTCGAACACAAGATTCCGCAATCCGAACCAATGCGCCAGAAAAA GGGACGGGATTATTGGGTTCACAACTTGCACTACATGTCGGTGAATGTCGAGAGCAAGGCCGTCAATGAAGCCCT CCAACAGGCTTTTGAAGCCGCCGACGAACAGACTAGCGGCTTCTTCAAGAAGCTGAAGTTGACTGGAAGGGTTCA GAAAGACTTTCACGTCACGCTCATACATCGTTCATCCTCGAAGGACTATCCGGAGCTGTGGCAGCGATATATGAA TGCGTTGGAACCCGTTGAAGGGGACGATGGGAAGATTGGCGAATGCAGTGTAGTACTCGAACGGGTACGCAGAAT TCCAGTCCACTCTTTTACATTGTTCGTGTCCGAGCTACTGACCGTCACGAATCCAGATTGTGTTTGATGATCGCA TCATGGCCATTGTGGTCCGTTTGGTGGACGAGGAAGGGAAGTGGGAGTGCGTGAACCGGGTTGCTCACATCACAG TCGGCACTCGGGATGCGTCGATCAAGGCCAAGGAAAGCAACGACTTGCTGGCCAAGTGGCTAGACGGGGGAGTCA AGAAGGGCCTGATGCAAGAGCTTGTCTTTGAGCAGAAGCCGACGATCGCAGGCAATGTCGGGGCTGTGCGTCTTA GATGA |