© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|454 |
| Gene name | |
| Location | scaffold_110:24163..26300 |
| Strand | - |
| Gene length (bp) | 2137 |
| Transcript length (bp) | 1938 |
| Coding sequence length (bp) | 1935 |
| Protein length (aa) | 645 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF08418 | Pol_alpha_B_N | DNA polymerase alpha subunit B N-terminal | 1.8E-58 | 21 | 230 |
| PF04042 | DNA_pol_E_B | DNA polymerase alpha/epsilon subunit B | 5.3E-42 | 352 | 587 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O74946|DPOA2_SCHPO | DNA polymerase alpha subunit B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pol12 PE=1 SV=1 | 25 | 645 | 2.0E-93 |
| sp|P38121|DPOA2_YEAST | DNA polymerase alpha subunit B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=POL12 PE=1 SV=1 | 174 | 643 | 6.0E-79 |
| sp|Q14181|DPOA2_HUMAN | DNA polymerase alpha subunit B OS=Homo sapiens GN=POLA2 PE=1 SV=2 | 143 | 617 | 2.0E-47 |
| sp|P33611|DPOA2_MOUSE | DNA polymerase alpha subunit B OS=Mus musculus GN=Pola2 PE=1 SV=2 | 112 | 614 | 3.0E-46 |
| sp|O89043|DPOA2_RAT | DNA polymerase alpha subunit B OS=Rattus norvegicus GN=Pola2 PE=1 SV=2 | 143 | 614 | 9.0E-46 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O74946|DPOA2_SCHPO | DNA polymerase alpha subunit B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pol12 PE=1 SV=1 | 25 | 645 | 2.0E-93 |
| sp|P38121|DPOA2_YEAST | DNA polymerase alpha subunit B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=POL12 PE=1 SV=1 | 174 | 643 | 6.0E-79 |
| sp|Q14181|DPOA2_HUMAN | DNA polymerase alpha subunit B OS=Homo sapiens GN=POLA2 PE=1 SV=2 | 143 | 617 | 2.0E-47 |
| sp|P33611|DPOA2_MOUSE | DNA polymerase alpha subunit B OS=Mus musculus GN=Pola2 PE=1 SV=2 | 112 | 614 | 3.0E-46 |
| sp|O89043|DPOA2_RAT | DNA polymerase alpha subunit B OS=Rattus norvegicus GN=Pola2 PE=1 SV=2 | 143 | 614 | 9.0E-46 |
| sp|Q58D13|DPOA2_BOVIN | DNA polymerase alpha subunit B OS=Bos taurus GN=POLA2 PE=2 SV=1 | 112 | 588 | 3.0E-42 |
| sp|Q9VB62|DPOA2_DROME | DNA polymerase alpha subunit B OS=Drosophila melanogaster GN=DNApol-alpha73 PE=1 SV=2 | 119 | 629 | 2.0E-30 |
| sp|Q21625|DPOA2_CAEEL | DNA polymerase alpha subunit B OS=Caenorhabditis elegans GN=div-1 PE=3 SV=3 | 224 | 645 | 1.0E-18 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006260 | DNA replication | Yes |
| GO:0003677 | DNA binding | Yes |
| GO:0044237 | cellular metabolic process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0006259 | DNA metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0044260 | cellular macromolecule metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0005488 | binding | No |
| GO:0009987 | cellular process | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 38 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|454 MADDEAELSARFAGGKTLEADVTAELQSVMRLYELSAEDVLFKWETYCLRRGHDAGEVSLPAVRGLKYSIHEELE RERREALVKKKEKKRAVAPTAKAGAVDVMGMLDSLMPTTPRAGPARAKRKLDSGIASSPVTGENASSFSDRAKPG EVIEVLNDHLAAATAPKRAFTEARVKLTAASDQKKMGYKPLAMKLSEASEILDDRIDDWAALVQEHHGLDDSAFG NAAAQGTSEIVAVGRIASDTTSDEGGRLNAASLVLETSRRTGMGFRVPLKMDAIERWSFFPGQIVALKGSNASGH EFVVKELVDAPLLPGAASTLSALESGRERLRGGHDDDGGGGDGTEEPAPLSVVFASGPYTADDNLDYEPLHALCG RAADGGVDALVLTGPFLDIDHPLIASGDFDLPEDAGIDPDTANMTTVFKYLFAPALNRLASSRPHLAVILVPSVR DVIAKHVSWPQDAFPRKDLGLPRTVRIVSNPMTLSLNEMLLAVSSQDVLYQLRGQEVVAKGPSPGDLMRRLCRYL VEQRHYFPLFPPTAREKLPRTGTEEGIATGAVLDLSYLKLGEMINVRPDVMLVPSALPPFVKVVESVLAINPGHL SKRKGAGTYAHMTLHAPEVGDAVSSVDAVVGHKIFDRARVEIVRI |
| Coding | >Ophio5|454 ATGGCAGACGACGAGGCGGAGCTCTCTGCGCGGTTCGCGGGGGGCAAGACGCTGGAGGCAGACGTGACGGCGGAG CTGCAATCCGTGATGCGGCTGTACGAGCTCTCAGCCGAAGATGTCCTCTTCAAATGGGAGACTTACTGCCTACGG AGAGGGCACGACGCGGGCGAAGTGTCGCTACCTGCGGTGCGCGGCCTCAAGTATAGCATCCACGAGGAGCTCGAG AGGGAACGGCGAGAGGCGCTCGTCAAGAAGAAGGAGAAGAAGAGGGCGGTTGCGCCGACGGCTAAGGCCGGCGCT GTCGATGTCATGGGTATGCTCGACTCTTTGATGCCCACTACGCCTAGGGCTGGGCCTGCGAGGGCAAAGCGGAAG TTGGATTCGGGGATTGCCTCGTCGCCGGTGACGGGGGAGAATGCCTCGTCGTTTAGCGATAGGGCCAAGCCGGGT GAGGTGATTGAGGTGCTCAACGACCATCTCGCCGCTGCGACGGCGCCAAAGAGGGCCTTTACCGAGGCCCGTGTC AAGCTCACGGCGGCATCGGATCAGAAGAAGATGGGGTACAAGCCGCTGGCGATGAAGCTTTCCGAAGCGAGTGAG ATACTCGACGACCGCATCGACGACTGGGCCGCGCTGGTACAGGAGCATCACGGGCTAGACGACTCGGCGTTTGGC AACGCCGCGGCACAGGGCACATCGGAAATCGTCGCCGTCGGACGCATCGCCTCGGATACGACATCGGACGAGGGC GGCAGGCTCAACGCCGCCTCGCTCGTGCTCGAGACGTCGCGCCGTACGGGCATGGGCTTTAGGGTACCGCTCAAA ATGGATGCCATCGAACGCTGGAGCTTCTTCCCAGGACAGATTGTAGCCCTCAAGGGGAGCAACGCGAGCGGACAC GAGTTTGTCGTCAAGGAACTTGTCGATGCGCCGCTGTTGCCGGGCGCTGCCTCGACGCTTTCCGCGCTCGAGTCT GGTAGGGAGAGGCTGCGAGGTGGACATGATGATGATGGTGGTGGTGGTGATGGTACAGAGGAGCCGGCGCCGTTG AGCGTCGTCTTTGCGTCTGGACCTTACACGGCTGACGATAATCTCGACTATGAGCCTCTTCATGCGCTGTGCGGT CGCGCGGCGGATGGTGGCGTCGACGCGCTCGTGCTGACTGGACCCTTTCTTGATATTGACCATCCGCTCATCGCA AGCGGTGACTTTGACCTCCCCGAAGACGCGGGCATCGATCCGGACACAGCCAACATGACGACCGTCTTCAAATAC CTATTCGCGCCGGCCCTGAACCGACTGGCATCATCACGACCACACCTCGCCGTCATCCTAGTCCCCTCTGTGCGA GACGTAATCGCCAAGCACGTCTCCTGGCCACAAGACGCCTTCCCACGCAAGGACCTAGGCCTTCCACGAACGGTA CGCATCGTATCGAACCCCATGACCCTCTCGCTCAACGAGATGCTCCTGGCCGTCTCTTCGCAAGACGTGCTGTAC CAACTGCGCGGACAAGAGGTTGTTGCCAAGGGCCCTTCGCCGGGCGATTTGATGAGGAGGCTGTGTCGATACCTG GTGGAGCAGAGACATTACTTTCCGCTTTTCCCGCCTACCGCCCGCGAGAAACTTCCTAGGACGGGCACGGAGGAG GGCATCGCTACCGGTGCCGTCCTTGACCTGAGCTACTTGAAGCTCGGCGAGATGATTAATGTTCGACCCGATGTG ATGCTCGTGCCCAGCGCGCTACCGCCATTTGTCAAGGTTGTCGAGAGCGTCCTCGCCATCAACCCGGGCCACCTC TCGAAGCGCAAAGGCGCCGGCACCTACGCCCACATGACGCTACACGCCCCCGAAGTCGGCGACGCGGTATCATCA GTCGATGCCGTGGTGGGCCACAAGATATTCGACAGGGCCCGCGTCGAGATTGTGAGGATT |
| Transcript | >Ophio5|454 ATGGCAGACGACGAGGCGGAGCTCTCTGCGCGGTTCGCGGGGGGCAAGACGCTGGAGGCAGACGTGACGGCGGAG CTGCAATCCGTGATGCGGCTGTACGAGCTCTCAGCCGAAGATGTCCTCTTCAAATGGGAGACTTACTGCCTACGG AGAGGGCACGACGCGGGCGAAGTGTCGCTACCTGCGGTGCGCGGCCTCAAGTATAGCATCCACGAGGAGCTCGAG AGGGAACGGCGAGAGGCGCTCGTCAAGAAGAAGGAGAAGAAGAGGGCGGTTGCGCCGACGGCTAAGGCCGGCGCT GTCGATGTCATGGGTATGCTCGACTCTTTGATGCCCACTACGCCTAGGGCTGGGCCTGCGAGGGCAAAGCGGAAG TTGGATTCGGGGATTGCCTCGTCGCCGGTGACGGGGGAGAATGCCTCGTCGTTTAGCGATAGGGCCAAGCCGGGT GAGGTGATTGAGGTGCTCAACGACCATCTCGCCGCTGCGACGGCGCCAAAGAGGGCCTTTACCGAGGCCCGTGTC AAGCTCACGGCGGCATCGGATCAGAAGAAGATGGGGTACAAGCCGCTGGCGATGAAGCTTTCCGAAGCGAGTGAG ATACTCGACGACCGCATCGACGACTGGGCCGCGCTGGTACAGGAGCATCACGGGCTAGACGACTCGGCGTTTGGC AACGCCGCGGCACAGGGCACATCGGAAATCGTCGCCGTCGGACGCATCGCCTCGGATACGACATCGGACGAGGGC GGCAGGCTCAACGCCGCCTCGCTCGTGCTCGAGACGTCGCGCCGTACGGGCATGGGCTTTAGGGTACCGCTCAAA ATGGATGCCATCGAACGCTGGAGCTTCTTCCCAGGACAGATTGTAGCCCTCAAGGGGAGCAACGCGAGCGGACAC GAGTTTGTCGTCAAGGAACTTGTCGATGCGCCGCTGTTGCCGGGCGCTGCCTCGACGCTTTCCGCGCTCGAGTCT GGTAGGGAGAGGCTGCGAGGTGGACATGATGATGATGGTGGTGGTGGTGATGGTACAGAGGAGCCGGCGCCGTTG AGCGTCGTCTTTGCGTCTGGACCTTACACGGCTGACGATAATCTCGACTATGAGCCTCTTCATGCGCTGTGCGGT CGCGCGGCGGATGGTGGCGTCGACGCGCTCGTGCTGACTGGACCCTTTCTTGATATTGACCATCCGCTCATCGCA AGCGGTGACTTTGACCTCCCCGAAGACGCGGGCATCGATCCGGACACAGCCAACATGACGACCGTCTTCAAATAC CTATTCGCGCCGGCCCTGAACCGACTGGCATCATCACGACCACACCTCGCCGTCATCCTAGTCCCCTCTGTGCGA GACGTAATCGCCAAGCACGTCTCCTGGCCACAAGACGCCTTCCCACGCAAGGACCTAGGCCTTCCACGAACGGTA CGCATCGTATCGAACCCCATGACCCTCTCGCTCAACGAGATGCTCCTGGCCGTCTCTTCGCAAGACGTGCTGTAC CAACTGCGCGGACAAGAGGTTGTTGCCAAGGGCCCTTCGCCGGGCGATTTGATGAGGAGGCTGTGTCGATACCTG GTGGAGCAGAGACATTACTTTCCGCTTTTCCCGCCTACCGCCCGCGAGAAACTTCCTAGGACGGGCACGGAGGAG GGCATCGCTACCGGTGCCGTCCTTGACCTGAGCTACTTGAAGCTCGGCGAGATGATTAATGTTCGACCCGATGTG ATGCTCGTGCCCAGCGCGCTACCGCCATTTGTCAAGGTTGTCGAGAGCGTCCTCGCCATCAACCCGGGCCACCTC TCGAAGCGCAAAGGCGCCGGCACCTACGCCCACATGACGCTACACGCCCCCGAAGTCGGCGACGCGGTATCATCA GTCGATGCCGTGGTGGGCCACAAGATATTCGACAGGGCCCGCGTCGAGATTGTGAGGATTTGA |
| Gene | >Ophio5|454 ATGGCAGACGACGAGGCGGAGCTCTCTGCGCGGTTCGCGGGGGGCAAGACGCTGGAGGCAGACGTGACGGCGGAG CTGCAATCCGTGATGCGGCTGTACGAGCTCTCAGCCGAAGATGTCCTCTTCAAATGGGAGACTTACTGCCTACGG AGAGGGCACGACGCGGGCGAAGTGTCGCTACCTGCGGTGCGCGGCCTCAAGTATAGCATCCACGAGGAGCTCGAG AGGGAACGGCGAGAGGCGCTCGTCAAGAAGAAGGAGAAGAAGAGGGCGGTTGCGCCGACGGCTAAGGCCGGCGCT GTCGATGTCATGGGTATGCTCGACTCTTTGATGCCCACTACGCCTAGGGCTGGGCCTGCGAGGGCAAAGCGGAAG TTGGATTCGGGGATTGCCTCGTCGCCGGTGACGGGGGAGAATGCGTACGTCGTTCTTCACTCGACAAGTCTCGGT GTTTCCGGCTTGCTAACGTTTTTTTTTTTCTTTTTTTTTTTTACCAGGACCAGCTCGTCGTTTAGCGATAGGGCC AAGCCGGGTGAGGTGATTGAGGTGCTCAACGACCATCTCGCCGCTGCGACGGCGCCAAAGAGGGCCTTTACCGAG GCCCGTGTCAAGCTCACGGCGGCATCGGATCAGAAGAAGATGGGGTACAAGCCGCTGGCGATGAAGCTTTCCGAA GCGAGTGAGATACTCGACGACCGCATCGACGACTGGGCCGCGCTGGTACAGGAGCATCACGGGCTAGACGACTCG GCGTTTGGCAACGCCGCGGCACAGGGCACATCGGAAATCGTCGCCGTCGGACGCATCGCCTCGGATACGACATCG GACGAGGGCGGCAGGCTCAACGCCGCCTCGCTCGTGCTCGAGACGTCGCGCCGTACGGGCATGGGCTTTAGGGTA CCGCTCAAAATGGATGCCATCGAACGCTGGAGCTTCTTCCCAGGACAGATTGTAGCCCTCAAGGGGAGCAACGCG AGCGGACACGAGTTTGTCGTCAAGGAACTTGTCGATGCGCCGCTGTTGCCGGGCGCTGCCTCGACGCTTTCCGCG CTCGAGTCTGGTAGGGAGAGGCTGCGAGGTGGACATGATGATGATGGTGGTGGTGGTGATGGTACAGAGGAGCCG GCGCCGTTGAGCGTCGTCTTTGCGTCTGGACCTTACACGGCTGACGATAATCTCGACTATGAGCCTCTTCATGCG CTGTGCGGTCGCGCGGCGGATGGTGGCGTCGACGCGCTCGTGCTGACTGGACCCTTTCTTGATATTGACCATCCG CTCATCGCAAGCGGTGACTTTGACCTCCCCGAAGACGCGGGCATCGATCCGGACACAGCCAACATGACGACCGTC TTCAAATACCTATTCGCGCCGGCCCTGAACCGACTGGCATCATCACGACCACACCTCGCCGTCATCCTAGTCCCC TCTGTGCGAGACGTAATCGCCAAGCACGTCTCCTGGCCACAAGACGCCTTCCCACGCAAGGACCTAGGCCTTCCA CGAACGGTACGCATCGTATCGAACCCCATGACCCTCTCGCTCAACGAGATGCTCCTGGCCGTCTCTTCGCAAGAC GTGCTGTACCAACTGCGCGGACAAGAGGTTGTTGCCAAGGGCCCTTCGCCGGGCGATTTGATGAGGAGGCTGTGT CGATACCTGGTGGAGCAGAGACATTACTTTCCGCTTTTCCCGCCTACCGCCCGCGAGAAACTTCCTAGGACGGGC ACGGAGGAGGGCATCGCTACCGGTGCCGTCCTTGACCTGAGCTACTTGAAGCTCGGCGAGATGATTAATGTTCGA CCCGATGTGATGCTCGTGCCCAGCGCGCTACCGCCATTTGTCAAGGTGAGCAACGACGAAATCATTCTCTTTTCT TTTCTTTTCTTTTCTTCTCTTCTCTTTTTTCCATACCAATCATGGCTGACGCGCCAATAATGAAAAAAAAAAAAA AAAAAAAAAGGTTGTCGAGAGCGTCCTCGCCATCAACCCGGGCCACCTCTCGAAGCGCAAAGGCGCCGGCACCTA CGCCCACATGACGCTACACGCCCCCGAAGTCGGCGACGCGGTATCATCAGTCGATGCCGTGGTGGGCCACAAGAT ATTCGACAGGGCCCGCGTCGAGATTGTGAGGATTTGA |