© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ophio5|4535 |
| Gene name | |
| Location | scaffold_36:45246..46151 |
| Strand | + |
| Gene length (bp) | 905 |
| Transcript length (bp) | 855 |
| Coding sequence length (bp) | 852 |
| Protein length (aa) | 284 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF12589 | WBS_methylT | Methyltransferase involved in Williams-Beuren syndrome | 1.5E-14 | 225 | 281 |
| PF08241 | Methyltransf_11 | Methyltransferase domain | 5.4E-11 | 52 | 161 |
| PF13649 | Methyltransf_25 | Methyltransferase domain | 6.0E-10 | 51 | 130 |
| PF01135 | PCMT | Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) | 5.8E-05 | 29 | 91 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P25627|BUD23_YEAST | 18S rRNA (guanine(1575)-N(7))-methyltransferase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BUD23 PE=1 SV=1 | 1 | 284 | 2.0E-91 |
| sp|Q9CY21|WBS22_MOUSE | Probable 18S rRNA (guanine-N(7))-methyltransferase OS=Mus musculus GN=Wbscr22 PE=1 SV=1 | 3 | 284 | 9.0E-82 |
| sp|O43709|WBS22_HUMAN | Probable 18S rRNA (guanine-N(7))-methyltransferase OS=Homo sapiens GN=WBSCR22 PE=1 SV=2 | 3 | 284 | 1.0E-76 |
| sp|Q55DA6|WBS22_DICDI | Probable 18S rRNA (guanine-N(7))-methyltransferase OS=Dictyostelium discoideum GN=DDB_G0269722 PE=3 SV=1 | 1 | 284 | 3.0E-76 |
| sp|Q10162|BUD23_SCHPO | 18S rRNA (guanine-N(7))-methyltransferase bud23 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=bud23 PE=3 SV=1 | 1 | 284 | 3.0E-74 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P25627|BUD23_YEAST | 18S rRNA (guanine(1575)-N(7))-methyltransferase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BUD23 PE=1 SV=1 | 1 | 284 | 2.0E-91 |
| sp|Q9CY21|WBS22_MOUSE | Probable 18S rRNA (guanine-N(7))-methyltransferase OS=Mus musculus GN=Wbscr22 PE=1 SV=1 | 3 | 284 | 9.0E-82 |
| sp|O43709|WBS22_HUMAN | Probable 18S rRNA (guanine-N(7))-methyltransferase OS=Homo sapiens GN=WBSCR22 PE=1 SV=2 | 3 | 284 | 1.0E-76 |
| sp|Q55DA6|WBS22_DICDI | Probable 18S rRNA (guanine-N(7))-methyltransferase OS=Dictyostelium discoideum GN=DDB_G0269722 PE=3 SV=1 | 1 | 284 | 3.0E-76 |
| sp|Q10162|BUD23_SCHPO | 18S rRNA (guanine-N(7))-methyltransferase bud23 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=bud23 PE=3 SV=1 | 1 | 284 | 3.0E-74 |
| sp|Q58DP0|WBS22_BOVIN | Probable 18S rRNA (guanine-N(7))-methyltransferase OS=Bos taurus GN=WBSCR22 PE=2 SV=1 | 3 | 284 | 4.0E-74 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016435 | rRNA (guanine) methyltransferase activity | Yes |
| GO:0070476 | rRNA (guanine-N7)-methylation | Yes |
| GO:0008168 | methyltransferase activity | Yes |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0140102 | catalytic activity, acting on a rRNA | No |
| GO:0016740 | transferase activity | No |
| GO:0044260 | cellular macromolecule metabolic process | No |
| GO:0000154 | rRNA modification | No |
| GO:0003674 | molecular_function | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0036265 | RNA (guanine-N7)-methylation | No |
| GO:0008150 | biological_process | No |
| GO:0043412 | macromolecule modification | No |
| GO:0043414 | macromolecule methylation | No |
| GO:0008173 | RNA methyltransferase activity | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0016741 | transferase activity, transferring one-carbon groups | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0034470 | ncRNA processing | No |
| GO:0016072 | rRNA metabolic process | No |
| GO:0140640 | catalytic activity, acting on a nucleic acid | No |
| GO:0032259 | methylation | No |
| GO:0008757 | S-adenosylmethionine-dependent methyltransferase activity | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0003824 | catalytic activity | No |
| GO:0034660 | ncRNA metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0140098 | catalytic activity, acting on RNA | No |
| GO:0009451 | RNA modification | No |
| GO:0008649 | rRNA methyltransferase activity | No |
| GO:0031167 | rRNA methylation | No |
| GO:0006396 | RNA processing | No |
| GO:0016070 | RNA metabolic process | No |
| GO:0070475 | rRNA base methylation | No |
| GO:0001510 | RNA methylation | No |
| GO:0006364 | rRNA processing | No |
| GO:0009987 | cellular process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 20 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|4535 MSRPEDSLAADVHYDDTEARKYTTSSRIQTIQATMTRRALQLLDLRQPSLILDVGCGSGLSGEILSAVPRTEGGP HTWIGIDLSPSMLDVALQRDVDGDLLLSDMGQGIPFRAGTFDAAISISALQWLCSAESSDTSPAGRLARFFDGLY ASLRRGGRAVCQFYPKNNAQRELVSRAAVKAGFGAGFLEDDPGTKNVKLYLVLTAGSAPAENDARTSPADITNVV AGMNDVDIVDARNKSKAGHARIRKGSKAWIVKKKEQMERKGKVVKATSKYTGRKRRPAF |
| Coding | >Ophio5|4535 ATGTCTCGGCCCGAGGACTCTCTCGCGGCCGACGTACACTACGATGACACCGAGGCGCGCAAATACACAACCAGT TCGCGCATCCAGACCATCCAGGCCACCATGACCCGCCGTGCCTTACAGCTCCTCGATCTGCGCCAACCTTCCCTT ATCCTTGACGTCGGTTGCGGAAGCGGCCTCTCAGGCGAAATACTGTCTGCAGTGCCCCGTACCGAGGGTGGACCG CACACTTGGATCGGCATTGATCTCTCGCCCTCGATGCTCGACGTCGCTCTGCAGCGCGACGTTGACGGCGATCTG CTCCTTTCCGATATGGGACAAGGCATCCCCTTTCGCGCGGGTACCTTTGACGCTGCGATCAGTATTTCCGCTCTG CAGTGGCTCTGCAGCGCAGAGTCCTCGGATACCTCGCCCGCCGGTCGCCTCGCCCGCTTTTTTGACGGCCTATAC GCTTCCCTTCGCCGCGGCGGCCGCGCCGTCTGCCAGTTCTATCCTAAGAATAACGCCCAGCGCGAGCTCGTCTCC CGAGCTGCCGTCAAGGCTGGCTTTGGCGCTGGCTTCCTGGAGGACGATCCGGGCACCAAGAACGTCAAATTGTAC CTCGTCCTTACCGCCGGCAGCGCTCCCGCCGAGAATGATGCTCGGACCAGCCCCGCAGACATTACCAATGTTGTC GCCGGAATGAATGACGTCGACATCGTAGACGCCCGCAATAAGAGCAAGGCAGGGCATGCCCGGATTCGCAAGGGG AGCAAGGCCTGGATCGTCAAGAAAAAGGAGCAGATGGAGCGCAAGGGCAAAGTCGTCAAGGCCACATCTAAGTAC ACTGGCAGGAAACGGCGTCCGGCATTC |
| Transcript | >Ophio5|4535 ATGTCTCGGCCCGAGGACTCTCTCGCGGCCGACGTACACTACGATGACACCGAGGCGCGCAAATACACAACCAGT TCGCGCATCCAGACCATCCAGGCCACCATGACCCGCCGTGCCTTACAGCTCCTCGATCTGCGCCAACCTTCCCTT ATCCTTGACGTCGGTTGCGGAAGCGGCCTCTCAGGCGAAATACTGTCTGCAGTGCCCCGTACCGAGGGTGGACCG CACACTTGGATCGGCATTGATCTCTCGCCCTCGATGCTCGACGTCGCTCTGCAGCGCGACGTTGACGGCGATCTG CTCCTTTCCGATATGGGACAAGGCATCCCCTTTCGCGCGGGTACCTTTGACGCTGCGATCAGTATTTCCGCTCTG CAGTGGCTCTGCAGCGCAGAGTCCTCGGATACCTCGCCCGCCGGTCGCCTCGCCCGCTTTTTTGACGGCCTATAC GCTTCCCTTCGCCGCGGCGGCCGCGCCGTCTGCCAGTTCTATCCTAAGAATAACGCCCAGCGCGAGCTCGTCTCC CGAGCTGCCGTCAAGGCTGGCTTTGGCGCTGGCTTCCTGGAGGACGATCCGGGCACCAAGAACGTCAAATTGTAC CTCGTCCTTACCGCCGGCAGCGCTCCCGCCGAGAATGATGCTCGGACCAGCCCCGCAGACATTACCAATGTTGTC GCCGGAATGAATGACGTCGACATCGTAGACGCCCGCAATAAGAGCAAGGCAGGGCATGCCCGGATTCGCAAGGGG AGCAAGGCCTGGATCGTCAAGAAAAAGGAGCAGATGGAGCGCAAGGGCAAAGTCGTCAAGGCCACATCTAAGTAC ACTGGCAGGAAACGGCGTCCGGCATTCTAG |
| Gene | >Ophio5|4535 ATGTCTCGGCCCGAGGACTCTCTGTACGTCCCCCAATCGCCAATACCACACACGAACTGACCTATTCTCCCAGCG CGGCCGACGTACACTACGATGACACCGAGGCGCGCAAATACACAACCAGTTCGCGCATCCAGACCATCCAGGCCA CCATGACCCGCCGTGCCTTACAGCTCCTCGATCTGCGCCAACCTTCCCTTATCCTTGACGTCGGTTGCGGAAGCG GCCTCTCAGGCGAAATACTGTCTGCAGTGCCCCGTACCGAGGGTGGACCGCACACTTGGATCGGCATTGATCTCT CGCCCTCGATGCTCGACGTCGCTCTGCAGCGCGACGTTGACGGCGATCTGCTCCTTTCCGATATGGGACAAGGCA TCCCCTTTCGCGCGGGTACCTTTGACGCTGCGATCAGTATTTCCGCTCTGCAGTGGCTCTGCAGCGCAGAGTCCT CGGATACCTCGCCCGCCGGTCGCCTCGCCCGCTTTTTTGACGGCCTATACGCTTCCCTTCGCCGCGGCGGCCGCG CCGTCTGCCAGTTCTATCCTAAGAATAACGCCCAGCGCGAGCTCGTCTCCCGAGCTGCCGTCAAGGCTGGCTTTG GCGCTGGCTTCCTGGAGGACGATCCGGGCACCAAGAACGTCAAATTGTACCTCGTCCTTACCGCCGGCAGCGCTC CCGCCGAGAATGATGCTCGGACCAGCCCCGCAGACATTACCAATGTTGTCGCCGGAATGAATGACGTCGACATCG TAGACGCCCGCAATAAGAGCAAGGCAGGGCATGCCCGGATTCGCAAGGGGAGCAAGGCCTGGATCGTCAAGAAAA AGGAGCAGATGGAGCGCAAGGGCAAAGTCGTCAAGGCCACATCTAAGTACACTGGCAGGAAACGGCGTCCGGCAT TCTAG |