© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|4534 |
| Gene name | |
| Location | scaffold_36:43700..44904 |
| Strand | - |
| Gene length (bp) | 1204 |
| Transcript length (bp) | 876 |
| Coding sequence length (bp) | 873 |
| Protein length (aa) | 291 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04148 | Erv26 | Transmembrane adaptor Erv26 | 3.5E-88 | 1 | 192 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P38869|SVP26_YEAST | Protein SVP26 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SVP26 PE=1 SV=1 | 3 | 193 | 7.0E-50 |
| sp|Q1MTR8|SVP26_SCHPO | Protein svp26 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=svp26 PE=3 SV=1 | 1 | 171 | 1.0E-38 |
| sp|Q6UWH6|TX261_HUMAN | Protein TEX261 OS=Homo sapiens GN=TEX261 PE=2 SV=1 | 1 | 197 | 3.0E-33 |
| sp|Q5BJW3|TX261_RAT | Protein TEX261 OS=Rattus norvegicus GN=Tex261 PE=2 SV=1 | 1 | 197 | 9.0E-33 |
| sp|Q62302|TX261_MOUSE | Protein TEX261 OS=Mus musculus GN=Tex261 PE=2 SV=1 | 1 | 197 | 9.0E-33 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P38869|SVP26_YEAST | Protein SVP26 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SVP26 PE=1 SV=1 | 3 | 193 | 7.0E-50 |
| sp|Q1MTR8|SVP26_SCHPO | Protein svp26 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=svp26 PE=3 SV=1 | 1 | 171 | 1.0E-38 |
| sp|Q6UWH6|TX261_HUMAN | Protein TEX261 OS=Homo sapiens GN=TEX261 PE=2 SV=1 | 1 | 197 | 3.0E-33 |
| sp|Q5BJW3|TX261_RAT | Protein TEX261 OS=Rattus norvegicus GN=Tex261 PE=2 SV=1 | 1 | 197 | 9.0E-33 |
| sp|Q62302|TX261_MOUSE | Protein TEX261 OS=Mus musculus GN=Tex261 PE=2 SV=1 | 1 | 197 | 9.0E-33 |
| sp|Q5RFE0|TX261_PONAB | Protein TEX261 OS=Pongo abelii GN=TEX261 PE=2 SV=1 | 1 | 197 | 7.0E-32 |
| sp|Q58DA4|TX261_BOVIN | Protein TEX261 OS=Bos taurus GN=TEX261 PE=2 SV=1 | 24 | 197 | 8.0E-29 |
| sp|Q54ER8|TX261_DICDI | Protein TEX261 homolog OS=Dictyostelium discoideum GN=DDB_G0291374 PE=3 SV=1 | 3 | 167 | 2.0E-22 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006888 | endoplasmic reticulum to Golgi vesicle-mediated transport | Yes |
| GO:0097020 | COPII receptor activity | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0008150 | biological_process | No |
| GO:0016192 | vesicle-mediated transport | No |
| GO:0051179 | localization | No |
| GO:0003674 | molecular_function | No |
| GO:0005575 | cellular_component | No |
| GO:0038024 | cargo receptor activity | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0006810 | transport | No |
| GO:0048193 | Golgi vesicle transport | No |
| GO:0046907 | intracellular transport | No |
| GO:0051234 | establishment of localization | No |
| GO:0009987 | cellular process | No |
| GO:0051641 | cellular localization | No |
| GO:0051649 | establishment of localization in cell | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 25 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 7 | 29 | 22 |
| 2 | 60 | 82 | 22 |
| 3 | 95 | 112 | 17 |
| 4 | 137 | 159 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 190.73 | 103.72 | 277.74 |
| CcL | In ants, during behavior modification | 146.28 | 77.56 | 214.99 |
| CcD | In ants, recently dead | 123.20 | 67.26 | 179.14 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.268332 | no |
| SC16a | CcD | 0.045635 | yes |
| CcL | CcD | 0.489195 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|4534 MWILPLVGYAGALVGFCFLTLAIASGLYYLSELVEEHTVIAKRLLTRLIYTVVGLQISLWLLDGFPFWSTLLGIA AHGVYLGNLRRFPFVKLSDPLFLLACVLVLVDHYVWFRHFSHGQTRAYQRSSYYDDVDVPSFTMIASYFGLCVWL VPFALFVSLSASDNVLPTMGSEPVRGVDGKNRHQGMVKAVVDSSPLPLPLTRLASKIEAFAQAGAVFRELSQPLS LTIASQLSQTDDEKAPGYVFFFWKKPGSGLSSGRDEAAPSCVCGLGPKIYECRPWGTEALPGIQTW |
| Coding | >Ophio5|4534 ATGTGGATTCTGCCGCTCGTCGGCTACGCTGGCGCTCTCGTCGGCTTCTGCTTCCTGACGCTGGCCATCGCCTCC GGGCTCTACTACCTGTCGGAGCTCGTCGAGGAACACACCGTCATAGCGAAGCGTCTCCTGACGCGCCTCATCTAC ACCGTCGTCGGCCTGCAGATTTCTCTGTGGCTTCTGGACGGCTTCCCCTTCTGGTCGACCTTGCTGGGCATCGCT GCTCACGGCGTCTACCTCGGCAACCTGAGGCGCTTCCCGTTTGTGAAGCTGTCAGATCCGCTCTTCCTGCTCGCA TGTGTCCTCGTTCTTGTCGATCACTATGTCTGGTTCAGACACTTTTCACACGGCCAGACGCGTGCCTACCAACGC TCGTCTTACTATGACGACGTCGACGTCCCAAGTTTTACCATGATTGCCTCTTACTTCGGCCTGTGTGTCTGGCTC GTCCCCTTTGCGCTCTTTGTTAGCTTGTCTGCCAGCGATAACGTCTTGCCCACCATGGGCAGCGAGCCAGTGCGT GGCGTCGACGGCAAGAACAGGCATCAGGGCATGGTCAAGGCCGTCGTTGACAGTTCGCCGCTTCCCCTACCCCTT ACTCGCCTTGCTTCGAAGATCGAGGCATTCGCACAAGCAGGAGCAGTGTTCCGCGAACTCTCACAGCCGCTTTCG CTTACCATCGCCAGCCAGCTTTCCCAGACTGACGATGAGAAGGCGCCGGGATATGTGTTTTTCTTTTGGAAGAAG CCAGGCAGCGGTTTATCCTCCGGCCGAGATGAAGCAGCCCCGTCCTGTGTGTGCGGCCTTGGACCTAAGATCTAT GAATGCCGGCCATGGGGGACGGAAGCGTTGCCTGGTATTCAGACTTGG |
| Transcript | >Ophio5|4534 ATGTGGATTCTGCCGCTCGTCGGCTACGCTGGCGCTCTCGTCGGCTTCTGCTTCCTGACGCTGGCCATCGCCTCC GGGCTCTACTACCTGTCGGAGCTCGTCGAGGAACACACCGTCATAGCGAAGCGTCTCCTGACGCGCCTCATCTAC ACCGTCGTCGGCCTGCAGATTTCTCTGTGGCTTCTGGACGGCTTCCCCTTCTGGTCGACCTTGCTGGGCATCGCT GCTCACGGCGTCTACCTCGGCAACCTGAGGCGCTTCCCGTTTGTGAAGCTGTCAGATCCGCTCTTCCTGCTCGCA TGTGTCCTCGTTCTTGTCGATCACTATGTCTGGTTCAGACACTTTTCACACGGCCAGACGCGTGCCTACCAACGC TCGTCTTACTATGACGACGTCGACGTCCCAAGTTTTACCATGATTGCCTCTTACTTCGGCCTGTGTGTCTGGCTC GTCCCCTTTGCGCTCTTTGTTAGCTTGTCTGCCAGCGATAACGTCTTGCCCACCATGGGCAGCGAGCCAGTGCGT GGCGTCGACGGCAAGAACAGGCATCAGGGCATGGTCAAGGCCGTCGTTGACAGTTCGCCGCTTCCCCTACCCCTT ACTCGCCTTGCTTCGAAGATCGAGGCATTCGCACAAGCAGGAGCAGTGTTCCGCGAACTCTCACAGCCGCTTTCG CTTACCATCGCCAGCCAGCTTTCCCAGACTGACGATGAGAAGGCGCCGGGATATGTGTTTTTCTTTTGGAAGAAG CCAGGCAGCGGTTTATCCTCCGGCCGAGATGAAGCAGCCCCGTCCTGTGTGTGCGGCCTTGGACCTAAGATCTAT GAATGCCGGCCATGGGGGACGGAAGCGTTGCCTGGTATTCAGACTTGGTAG |
| Gene | >Ophio5|4534 ATGTGGATTCTGCCGCTCGTCGGCTACGCTGGCGCTCTCGTCGGCTTCTGCTTCCTGACGCTGGCCATCGCCTCC GGGCTCTACTACCTGTCGGAGCTCGTCGAGGAACACACCGTCATAGCGAAGCGTCTCCTGACGCGCCTCATCTAC ACCGTCGTCGGCCTGCAGATTTCTCTGTGGCTTCTGGACGGCTTCCCCTTCTGGTCGACCTTGCTGGGCATCGCT GCTCACGGCGTCTACCTCGGCAACCTGAGGCGCTTCCCGTTTGTGAAGCTGTCAGATCCGCTCTTCCTGCTCGCA TGTGGTAGGCACGGACTTGTTGCATACTGATTTGTGCTCTCGCTGATTCCGACGATGCCTTCAGTCCTCGTTCTT GTCGATCACTATGTCTGGTTCAGACACTTTTCACACGGCCAGACGCGTGCCTACCAACGCTCGTCTTACTATGAC GACGTCGACGTCCCAAGTTTTACCATGATTGCCTCTTACTTCGGCCTGTGTGTCTGGCTCGTCCCCTTTGCGCTC TTTGTTAGCTTGTCTGCCAGCGATAACGTCTTGCCCACCATGGGCAGCGAGCCAGTGCGTGGCGTCGACGGCAAG AACAGGCATCAGGGCATGGTCAAGGCCGTCGTTGACAGTGTTCGCGGCGCCATTGGCGATCTGGCCGGCTCCTGG AATATGAATCGACCTTGATTGGATTCCACGAGTCAGTGCGAGGCGAACTCTCTAGTCGCCGCTTCCCCTACCCCT TACTCGCCTTGCTTCGAAGATCGAGGCATTCGCACAAGCAGGAGCAGTGTGAGTCATGATCTTTCATCTTCTTCC TCTGCCTATGATGAACCTCCATCACGCTAGATGGTATTTGACAAGGCTATGCCTTGGGTGATCATTTTTTGTCAT AGTTACTCTGACAGGCTCTCCATTTCATCGACCTTGTTCCACGCGTTAGTCAAAATTAGGCTGACTCTGGCGCAG GTTCCGCGAACTCTCACAGCCGCTTTCGCTTACCATCGCCAGCCAGCTTTCCCAGACTGACGATGAGAAGGCGCC GGGATATGTGTTTTTCTTTTGGAAGAAGCCAGGCAGCGGTTTATCCTCCGGCCGAGATGAAGCAGCCCCGTCCTG TGTGTGCGGCCTTGGACCTAAGATCTATGAATGCCGGCCATGGGGGACGGAAGCGTTGCCTGGTATTCAGACTTG GTAG |