Protein ID | Ophio5|4534 |
Gene name | |
Location | scaffold_36:43700..44904 |
Strand | - |
Gene length (bp) | 1204 |
Transcript length (bp) | 876 |
Coding sequence length (bp) | 873 |
Protein length (aa) | 291 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF04148 | Erv26 | Transmembrane adaptor Erv26 | 3.5E-88 | 1 | 192 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|P38869|SVP26_YEAST | Protein SVP26 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SVP26 PE=1 SV=1 | 3 | 193 | 7.0E-50 |
sp|Q1MTR8|SVP26_SCHPO | Protein svp26 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=svp26 PE=3 SV=1 | 1 | 171 | 1.0E-38 |
sp|Q6UWH6|TX261_HUMAN | Protein TEX261 OS=Homo sapiens GN=TEX261 PE=2 SV=1 | 1 | 197 | 3.0E-33 |
sp|Q5BJW3|TX261_RAT | Protein TEX261 OS=Rattus norvegicus GN=Tex261 PE=2 SV=1 | 1 | 197 | 9.0E-33 |
sp|Q62302|TX261_MOUSE | Protein TEX261 OS=Mus musculus GN=Tex261 PE=2 SV=1 | 1 | 197 | 9.0E-33 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|P38869|SVP26_YEAST | Protein SVP26 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SVP26 PE=1 SV=1 | 3 | 193 | 7.0E-50 |
sp|Q1MTR8|SVP26_SCHPO | Protein svp26 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=svp26 PE=3 SV=1 | 1 | 171 | 1.0E-38 |
sp|Q6UWH6|TX261_HUMAN | Protein TEX261 OS=Homo sapiens GN=TEX261 PE=2 SV=1 | 1 | 197 | 3.0E-33 |
sp|Q5BJW3|TX261_RAT | Protein TEX261 OS=Rattus norvegicus GN=Tex261 PE=2 SV=1 | 1 | 197 | 9.0E-33 |
sp|Q62302|TX261_MOUSE | Protein TEX261 OS=Mus musculus GN=Tex261 PE=2 SV=1 | 1 | 197 | 9.0E-33 |
sp|Q5RFE0|TX261_PONAB | Protein TEX261 OS=Pongo abelii GN=TEX261 PE=2 SV=1 | 1 | 197 | 7.0E-32 |
sp|Q58DA4|TX261_BOVIN | Protein TEX261 OS=Bos taurus GN=TEX261 PE=2 SV=1 | 24 | 197 | 8.0E-29 |
sp|Q54ER8|TX261_DICDI | Protein TEX261 homolog OS=Dictyostelium discoideum GN=DDB_G0291374 PE=3 SV=1 | 3 | 167 | 2.0E-22 |
GO Term | Description | Terminal node |
---|---|---|
GO:0006888 | endoplasmic reticulum to Golgi vesicle-mediated transport | Yes |
GO:0097020 | COPII receptor activity | Yes |
GO:0016021 | integral component of membrane | Yes |
GO:0008150 | biological_process | No |
GO:0016192 | vesicle-mediated transport | No |
GO:0051179 | localization | No |
GO:0003674 | molecular_function | No |
GO:0005575 | cellular_component | No |
GO:0038024 | cargo receptor activity | No |
GO:0031224 | intrinsic component of membrane | No |
GO:0110165 | cellular anatomical entity | No |
GO:0006810 | transport | No |
GO:0048193 | Golgi vesicle transport | No |
GO:0046907 | intracellular transport | No |
GO:0051234 | establishment of localization | No |
GO:0009987 | cellular process | No |
GO:0051641 | cellular localization | No |
GO:0051649 | establishment of localization in cell | No |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Endoplasmic reticulum|Lysosome/Vacuole | Signal peptide|Transmembrane domain | 0.1701 | 0.1481 | 0.0834 | 0.3213 | 0.1237 | 0.0337 | 0.6815 | 0.6695 | 0.6597 | 0.0312 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 7 | 29 | 22 |
2 | 60 | 82 | 22 |
3 | 95 | 112 | 17 |
4 | 137 | 159 | 22 |
Orthofinder run ID | 4 |
Orthogroup | 1081 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ophio5|4534 MWILPLVGYAGALVGFCFLTLAIASGLYYLSELVEEHTVIAKRLLTRLIYTVVGLQISLWLLDGFPFWSTLLGIA AHGVYLGNLRRFPFVKLSDPLFLLACVLVLVDHYVWFRHFSHGQTRAYQRSSYYDDVDVPSFTMIASYFGLCVWL VPFALFVSLSASDNVLPTMGSEPVRGVDGKNRHQGMVKAVVDSSPLPLPLTRLASKIEAFAQAGAVFRELSQPLS LTIASQLSQTDDEKAPGYVFFFWKKPGSGLSSGRDEAAPSCVCGLGPKIYECRPWGTEALPGIQTW |
Coding | >Ophio5|4534 ATGTGGATTCTGCCGCTCGTCGGCTACGCTGGCGCTCTCGTCGGCTTCTGCTTCCTGACGCTGGCCATCGCCTCC GGGCTCTACTACCTGTCGGAGCTCGTCGAGGAACACACCGTCATAGCGAAGCGTCTCCTGACGCGCCTCATCTAC ACCGTCGTCGGCCTGCAGATTTCTCTGTGGCTTCTGGACGGCTTCCCCTTCTGGTCGACCTTGCTGGGCATCGCT GCTCACGGCGTCTACCTCGGCAACCTGAGGCGCTTCCCGTTTGTGAAGCTGTCAGATCCGCTCTTCCTGCTCGCA TGTGTCCTCGTTCTTGTCGATCACTATGTCTGGTTCAGACACTTTTCACACGGCCAGACGCGTGCCTACCAACGC TCGTCTTACTATGACGACGTCGACGTCCCAAGTTTTACCATGATTGCCTCTTACTTCGGCCTGTGTGTCTGGCTC GTCCCCTTTGCGCTCTTTGTTAGCTTGTCTGCCAGCGATAACGTCTTGCCCACCATGGGCAGCGAGCCAGTGCGT GGCGTCGACGGCAAGAACAGGCATCAGGGCATGGTCAAGGCCGTCGTTGACAGTTCGCCGCTTCCCCTACCCCTT ACTCGCCTTGCTTCGAAGATCGAGGCATTCGCACAAGCAGGAGCAGTGTTCCGCGAACTCTCACAGCCGCTTTCG CTTACCATCGCCAGCCAGCTTTCCCAGACTGACGATGAGAAGGCGCCGGGATATGTGTTTTTCTTTTGGAAGAAG CCAGGCAGCGGTTTATCCTCCGGCCGAGATGAAGCAGCCCCGTCCTGTGTGTGCGGCCTTGGACCTAAGATCTAT GAATGCCGGCCATGGGGGACGGAAGCGTTGCCTGGTATTCAGACTTGG |
Transcript | >Ophio5|4534 ATGTGGATTCTGCCGCTCGTCGGCTACGCTGGCGCTCTCGTCGGCTTCTGCTTCCTGACGCTGGCCATCGCCTCC GGGCTCTACTACCTGTCGGAGCTCGTCGAGGAACACACCGTCATAGCGAAGCGTCTCCTGACGCGCCTCATCTAC ACCGTCGTCGGCCTGCAGATTTCTCTGTGGCTTCTGGACGGCTTCCCCTTCTGGTCGACCTTGCTGGGCATCGCT GCTCACGGCGTCTACCTCGGCAACCTGAGGCGCTTCCCGTTTGTGAAGCTGTCAGATCCGCTCTTCCTGCTCGCA TGTGTCCTCGTTCTTGTCGATCACTATGTCTGGTTCAGACACTTTTCACACGGCCAGACGCGTGCCTACCAACGC TCGTCTTACTATGACGACGTCGACGTCCCAAGTTTTACCATGATTGCCTCTTACTTCGGCCTGTGTGTCTGGCTC GTCCCCTTTGCGCTCTTTGTTAGCTTGTCTGCCAGCGATAACGTCTTGCCCACCATGGGCAGCGAGCCAGTGCGT GGCGTCGACGGCAAGAACAGGCATCAGGGCATGGTCAAGGCCGTCGTTGACAGTTCGCCGCTTCCCCTACCCCTT ACTCGCCTTGCTTCGAAGATCGAGGCATTCGCACAAGCAGGAGCAGTGTTCCGCGAACTCTCACAGCCGCTTTCG CTTACCATCGCCAGCCAGCTTTCCCAGACTGACGATGAGAAGGCGCCGGGATATGTGTTTTTCTTTTGGAAGAAG CCAGGCAGCGGTTTATCCTCCGGCCGAGATGAAGCAGCCCCGTCCTGTGTGTGCGGCCTTGGACCTAAGATCTAT GAATGCCGGCCATGGGGGACGGAAGCGTTGCCTGGTATTCAGACTTGGTAG |
Gene | >Ophio5|4534 ATGTGGATTCTGCCGCTCGTCGGCTACGCTGGCGCTCTCGTCGGCTTCTGCTTCCTGACGCTGGCCATCGCCTCC GGGCTCTACTACCTGTCGGAGCTCGTCGAGGAACACACCGTCATAGCGAAGCGTCTCCTGACGCGCCTCATCTAC ACCGTCGTCGGCCTGCAGATTTCTCTGTGGCTTCTGGACGGCTTCCCCTTCTGGTCGACCTTGCTGGGCATCGCT GCTCACGGCGTCTACCTCGGCAACCTGAGGCGCTTCCCGTTTGTGAAGCTGTCAGATCCGCTCTTCCTGCTCGCA TGTGGTAGGCACGGACTTGTTGCATACTGATTTGTGCTCTCGCTGATTCCGACGATGCCTTCAGTCCTCGTTCTT GTCGATCACTATGTCTGGTTCAGACACTTTTCACACGGCCAGACGCGTGCCTACCAACGCTCGTCTTACTATGAC GACGTCGACGTCCCAAGTTTTACCATGATTGCCTCTTACTTCGGCCTGTGTGTCTGGCTCGTCCCCTTTGCGCTC TTTGTTAGCTTGTCTGCCAGCGATAACGTCTTGCCCACCATGGGCAGCGAGCCAGTGCGTGGCGTCGACGGCAAG AACAGGCATCAGGGCATGGTCAAGGCCGTCGTTGACAGTGTTCGCGGCGCCATTGGCGATCTGGCCGGCTCCTGG AATATGAATCGACCTTGATTGGATTCCACGAGTCAGTGCGAGGCGAACTCTCTAGTCGCCGCTTCCCCTACCCCT TACTCGCCTTGCTTCGAAGATCGAGGCATTCGCACAAGCAGGAGCAGTGTGAGTCATGATCTTTCATCTTCTTCC TCTGCCTATGATGAACCTCCATCACGCTAGATGGTATTTGACAAGGCTATGCCTTGGGTGATCATTTTTTGTCAT AGTTACTCTGACAGGCTCTCCATTTCATCGACCTTGTTCCACGCGTTAGTCAAAATTAGGCTGACTCTGGCGCAG GTTCCGCGAACTCTCACAGCCGCTTTCGCTTACCATCGCCAGCCAGCTTTCCCAGACTGACGATGAGAAGGCGCC GGGATATGTGTTTTTCTTTTGGAAGAAGCCAGGCAGCGGTTTATCCTCCGGCCGAGATGAAGCAGCCCCGTCCTG TGTGTGCGGCCTTGGACCTAAGATCTATGAATGCCGGCCATGGGGGACGGAAGCGTTGCCTGGTATTCAGACTTG GTAG |