Protein ID | Ophio5|4523 |
Gene name | |
Location | scaffold_36:19895..21635 |
Strand | + |
Gene length (bp) | 1740 |
Transcript length (bp) | 1395 |
Coding sequence length (bp) | 1392 |
Protein length (aa) | 464 |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 17 | 0.45 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 104 | 126 | 22 |
2 | 139 | 161 | 22 |
3 | 181 | 203 | 22 |
4 | 224 | 246 | 22 |
5 | 266 | 288 | 22 |
6 | 300 | 322 | 22 |
7 | 337 | 356 | 19 |
Expression values
Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
---|---|---|---|---|
SC16a | Pure fungal culture | 69.04 | 37.37 | 100.70 |
CcL | In ants, during behavior modification | 45.29 | 23.84 | 66.74 |
CcD | In ants, recently dead | 47.54 | 25.59 | 69.48 |
Differential expression
Label1 | Label2 | Q-value | Significant difference |
---|---|---|---|
SC16a | CcL | 0.068500 | no |
SC16a | CcD | 0.105512 | no |
CcL | CcD | 0.868921 | no |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ophio5|4523 MLVSTNGTPRRQLADAERPGSRGSDDRRRSLEAVLDGSQTAERPKGAPEPRHVSAAWLLQGKPTTMENFPSLPPA RQQAILNGPGLAPPPGVVPNFVHPPNKTSMGVTIIAICLVLGTLTGLIRLYSRICVKKMHAEDVLGFAAYVSFVA SGWSLLAFGHYGGFFVHQWNVQAKTMITISYVLYFFPIFYCATMLFAKTAILLEWTRIFVPVIRNSFYWISRVTT IINVCLYLSVIVATSLYCVPVEKVWHKWVPGHCLNRKAVDTCVAVFNLGIDLLILALPQRIIWSLRIDTSKKIGV SIVFSVGLLACACAIARTYLVIQLDFTGDVTYKLCETFMFAYSEMACVLMVFYVPASARAFKQNSLLSRMVSSLR SWTRLPPSKKNRSAEDVGGQFPPTIGSKPINRVLHSADEETQALSLGEMRPAERFIVKTMEFEQREDAASKASTE PELPNHRQHPWAKP |
Coding | >Ophio5|4523 ATGCTCGTCTCCACCAATGGCACGCCTCGCAGGCAGCTGGCCGATGCGGAACGGCCAGGTTCAAGGGGCTCTGAC GACCGTCGACGCTCTCTCGAAGCAGTTCTGGACGGCTCCCAAACAGCAGAGAGGCCAAAAGGCGCCCCAGAGCCT CGTCATGTCTCCGCCGCGTGGCTTCTCCAAGGCAAGCCAACGACAATGGAAAACTTCCCCAGCCTACCGCCCGCC CGGCAACAAGCCATCCTCAACGGCCCCGGGCTGGCGCCGCCCCCGGGCGTTGTGCCCAACTTCGTCCACCCGCCG AACAAGACATCCATGGGCGTCACCATCATTGCCATCTGCCTGGTCCTCGGCACACTGACGGGCCTCATCCGCTTG TACTCGCGCATTTGCGTCAAAAAGATGCACGCCGAGGACGTCCTCGGCTTCGCGGCCTATGTTTCTTTCGTGGCC TCGGGCTGGAGTCTGCTGGCCTTTGGACACTACGGCGGCTTCTTCGTGCATCAGTGGAACGTCCAGGCCAAGACG ATGATAACCATTTCTTACGTCTTGTACTTCTTTCCCATCTTCTACTGCGCGACAATGCTCTTCGCCAAGACGGCC ATCTTGCTCGAGTGGACGCGCATCTTTGTGCCCGTCATCCGGAACTCGTTCTACTGGATAAGCCGTGTGACTACC ATCATCAATGTCTGCCTCTACTTGTCGGTCATCGTCGCCACCTCATTGTACTGTGTGCCGGTAGAAAAAGTCTGG CACAAGTGGGTTCCGGGTCATTGCCTTAATCGCAAGGCTGTCGACACATGCGTCGCCGTCTTCAACCTTGGCATT GATCTCCTGATATTGGCCCTGCCACAAAGGATCATCTGGTCCCTCAGGATCGACACCTCCAAAAAAATCGGCGTC TCGATCGTCTTCTCCGTCGGATTGCTGGCTTGTGCCTGCGCCATCGCTCGAACGTACCTGGTGATCCAGCTGGAT TTTACGGGCGACGTGACGTATAAGCTCTGCGAGACGTTCATGTTTGCCTACTCGGAAATGGCGTGTGTGCTCATG GTCTTCTACGTGCCGGCGTCGGCGCGCGCCTTTAAGCAGAATAGCCTGCTGTCGAGGATGGTGTCGTCGCTGCGT TCGTGGACGCGGCTGCCACCGTCGAAGAAGAACAGATCGGCCGAGGACGTCGGAGGGCAGTTCCCGCCGACGATC GGCAGCAAGCCGATCAACCGCGTCCTTCACTCGGCCGACGAGGAGACGCAGGCGCTGAGCCTTGGCGAGATGAGG CCGGCGGAGCGCTTCATCGTAAAAACTATGGAGTTTGAGCAGCGCGAAGACGCGGCATCCAAAGCATCGACAGAG CCTGAGCTACCGAACCATAGACAACATCCTTGGGCGAAGCCG |
Transcript | >Ophio5|4523 ATGCTCGTCTCCACCAATGGCACGCCTCGCAGGCAGCTGGCCGATGCGGAACGGCCAGGTTCAAGGGGCTCTGAC GACCGTCGACGCTCTCTCGAAGCAGTTCTGGACGGCTCCCAAACAGCAGAGAGGCCAAAAGGCGCCCCAGAGCCT CGTCATGTCTCCGCCGCGTGGCTTCTCCAAGGCAAGCCAACGACAATGGAAAACTTCCCCAGCCTACCGCCCGCC CGGCAACAAGCCATCCTCAACGGCCCCGGGCTGGCGCCGCCCCCGGGCGTTGTGCCCAACTTCGTCCACCCGCCG AACAAGACATCCATGGGCGTCACCATCATTGCCATCTGCCTGGTCCTCGGCACACTGACGGGCCTCATCCGCTTG TACTCGCGCATTTGCGTCAAAAAGATGCACGCCGAGGACGTCCTCGGCTTCGCGGCCTATGTTTCTTTCGTGGCC TCGGGCTGGAGTCTGCTGGCCTTTGGACACTACGGCGGCTTCTTCGTGCATCAGTGGAACGTCCAGGCCAAGACG ATGATAACCATTTCTTACGTCTTGTACTTCTTTCCCATCTTCTACTGCGCGACAATGCTCTTCGCCAAGACGGCC ATCTTGCTCGAGTGGACGCGCATCTTTGTGCCCGTCATCCGGAACTCGTTCTACTGGATAAGCCGTGTGACTACC ATCATCAATGTCTGCCTCTACTTGTCGGTCATCGTCGCCACCTCATTGTACTGTGTGCCGGTAGAAAAAGTCTGG CACAAGTGGGTTCCGGGTCATTGCCTTAATCGCAAGGCTGTCGACACATGCGTCGCCGTCTTCAACCTTGGCATT GATCTCCTGATATTGGCCCTGCCACAAAGGATCATCTGGTCCCTCAGGATCGACACCTCCAAAAAAATCGGCGTC TCGATCGTCTTCTCCGTCGGATTGCTGGCTTGTGCCTGCGCCATCGCTCGAACGTACCTGGTGATCCAGCTGGAT TTTACGGGCGACGTGACGTATAAGCTCTGCGAGACGTTCATGTTTGCCTACTCGGAAATGGCGTGTGTGCTCATG GTCTTCTACGTGCCGGCGTCGGCGCGCGCCTTTAAGCAGAATAGCCTGCTGTCGAGGATGGTGTCGTCGCTGCGT TCGTGGACGCGGCTGCCACCGTCGAAGAAGAACAGATCGGCCGAGGACGTCGGAGGGCAGTTCCCGCCGACGATC GGCAGCAAGCCGATCAACCGCGTCCTTCACTCGGCCGACGAGGAGACGCAGGCGCTGAGCCTTGGCGAGATGAGG CCGGCGGAGCGCTTCATCGTAAAAACTATGGAGTTTGAGCAGCGCGAAGACGCGGCATCCAAAGCATCGACAGAG CCTGAGCTACCGAACCATAGACAACATCCTTGGGCGAAGCCGTAG |
Gene | >Ophio5|4523 ATGCTCGTCTCCACCAATGGCACGCCTCGCAGGCAGCTGGCCGATGCGGAACGGCCAGGTTCAAGGGTCAGGGTC GCATCGGCAACCAAGCATCTGATAGTCAACGCTCATCAACCCCCCTGCAAGGTGGCCACCAGGGCTCTGACGACC GTCGACGCTCTCTCGAAGCAGGCAAGGGTCCGGGTCAGCTCGCCCGCACGCCACTTGCTGACGCGCAGCTGCATC TCTTGAAGTTCTGGACGGCTCCCAAACAGCAGAGAGGCCAAAAGGCGCCCCAGAGCCTCGTCATGTCTCCGCCGC GTGGCTTCTCCAAGGCAAGCCAACGACAATGGAAAACTTCCCCAGCCTACCGCCCGCCCGGCAACAAGCCATCCT CAACGGCCCCGGGCTGGCGCCGCCCCCGGGCGTTGTGCCCAACTTCGTCCACCCGCCGAACAAGACATCCATGGG CGTCACCATCATTGCCATCTGCCTGGTCCTCGGCACACTGACGGGCCTCATCCGCTTGTACTCGCGCATTTGCGT CAAAAAGATGCACGCCGAGGACGGTATGTGGCCAACCTTTACCGTACCTGCTCCGTGCTCACAGATGTGCCATCT AGTCCTCGGCTTCGCGGCCTATGTATCGTCGCTCTACCCACCCCGTGTTTATGTCCCAAGCTCACCATGACAGGT TTCTTTCGTGGCCTCGGGCTGGAGTCTGCTGGCCTTTGGACACTACGGCGGCTTCTTCGTGCATCAGTGGAACGT CCAGGCCAAGACGATGATAACCATTTCTTACGTCGGTCATGGCCGACCCCCTCGCCATAAGAAGTGCCGGCTGAC GTCGGACAGGTCTTGTACTTCTTTCCCATCTTCTACTGCGCGACAATGCTCTTCGCCAAGACGGCCATCTTGCTC GAGTGGACGCGCATCTTTGTGCCCGTCATCCGGAACTCGTTCTACTGGATAAGCCGTGTGACTACCATCATCAAT GTCTGCCTCTACTTGTCGGTCATCGTCGCCACCTCATTGTACTGTGTGCCGGTAGAAAAAGTCTGGCACAAGTGG GTTCCGGGTCATTGCCTTAATCGCAAGGCTGTCGACACATGCGTCGCCGTCTTCAACCTTGGCATTGATCTCCTG ATATTGGCCCTGCCACAAAGGATCATCTGGTCCCTCAGGATCGACACCTCCAAAAAAATCGGCGTCTCGATCGTC TTCTCCGTCGGATTGCTGTAAGTCGTCTCGTCCGAGGTGATGGGCTTCAAGCTGACGAGATGGCCGGCCAGGGCT TGTGCCTGCGCCATCGCTCGAACGTACCTGGTGATCCAGCTGGATTTTACGGGCGACGTGACGTATAAGCTCTGC GAGACGTTCATGTTTGCCTACTCGGAAATGGCGTGTGTGCTCATGGTCTTCTACGTGCCGGCGTCGGCGCGCGCC TTTAAGCAGAATAGCCTGCTGTCGAGGATGGTGTCGTCGCTGCGTTCGTGGACGCGGCTGCCACCGTCGAAGAAG AACAGATCGGCCGAGGACGTCGGAGGGCAGTTCCCGCCGACGATCGGCAGCAAGCCGATCAACCGCGTCCTTCAC TCGGCCGACGAGGAGACGCAGGCGCTGAGCCTTGGCGAGATGAGGCCGGCGGAGCGCTTCATCGTAAAAACTATG GAGTTTGAGCAGCGCGAAGACGCGGCATCCAAAGCATCGACAGAGCCTGAGCTACCGAACCATAGACAACATCCT TGGGCGAAGCCGTAG |