© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|452 |
| Gene name | |
| Location | scaffold_110:20161..21416 |
| Strand | - |
| Gene length (bp) | 1255 |
| Transcript length (bp) | 1023 |
| Coding sequence length (bp) | 1020 |
| Protein length (aa) | 340 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04321 | RmlD_sub_bind | RmlD substrate binding domain | 7.2E-54 | 26 | 319 |
| PF01370 | Epimerase | NAD dependent epimerase/dehydratase family | 8.1E-20 | 27 | 216 |
| PF16363 | GDP_Man_Dehyd | GDP-mannose 4,6 dehydratase | 2.4E-09 | 60 | 169 |
| PF07993 | NAD_binding_4 | Male sterility protein | 1.3E-07 | 85 | 203 |
| PF02719 | Polysacc_synt_2 | Polysaccharide biosynthesis protein | 5.6E-05 | 68 | 170 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q5BJJ6|MAT2B_DANRE | Methionine adenosyltransferase 2 subunit beta OS=Danio rerio GN=mat2b PE=2 SV=1 | 25 | 339 | 7.0E-65 |
| sp|Q99LB6|MAT2B_MOUSE | Methionine adenosyltransferase 2 subunit beta OS=Mus musculus GN=Mat2b PE=1 SV=1 | 25 | 320 | 4.0E-63 |
| sp|Q5U2R0|MAT2B_RAT | Methionine adenosyltransferase 2 subunit beta OS=Rattus norvegicus GN=Mat2b PE=2 SV=1 | 25 | 320 | 7.0E-63 |
| sp|Q5R4E0|MAT2B_PONAB | Methionine adenosyltransferase 2 subunit beta OS=Pongo abelii GN=MAT2B PE=2 SV=1 | 22 | 320 | 2.0E-62 |
| sp|Q9NZL9|MAT2B_HUMAN | Methionine adenosyltransferase 2 subunit beta OS=Homo sapiens GN=MAT2B PE=1 SV=1 | 22 | 320 | 2.0E-62 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q5BJJ6|MAT2B_DANRE | Methionine adenosyltransferase 2 subunit beta OS=Danio rerio GN=mat2b PE=2 SV=1 | 25 | 339 | 7.0E-65 |
| sp|Q99LB6|MAT2B_MOUSE | Methionine adenosyltransferase 2 subunit beta OS=Mus musculus GN=Mat2b PE=1 SV=1 | 25 | 320 | 4.0E-63 |
| sp|Q5U2R0|MAT2B_RAT | Methionine adenosyltransferase 2 subunit beta OS=Rattus norvegicus GN=Mat2b PE=2 SV=1 | 25 | 320 | 7.0E-63 |
| sp|Q5R4E0|MAT2B_PONAB | Methionine adenosyltransferase 2 subunit beta OS=Pongo abelii GN=MAT2B PE=2 SV=1 | 22 | 320 | 2.0E-62 |
| sp|Q9NZL9|MAT2B_HUMAN | Methionine adenosyltransferase 2 subunit beta OS=Homo sapiens GN=MAT2B PE=1 SV=1 | 22 | 320 | 2.0E-62 |
| sp|Q566L8|MAT2B_XENTR | Methionine adenosyltransferase 2 subunit beta OS=Xenopus tropicalis GN=mat2b PE=2 SV=1 | 25 | 320 | 2.0E-62 |
| sp|Q4QQZ4|MAT2B_XENLA | Methionine adenosyltransferase 2 subunit beta OS=Xenopus laevis GN=mat2b PE=2 SV=1 | 25 | 320 | 6.0E-62 |
| sp|Q29RI9|MAT2B_BOVIN | Methionine adenosyltransferase 2 subunit beta OS=Bos taurus GN=MAT2B PE=2 SV=1 | 22 | 320 | 1.0E-61 |
| sp|D4GU71|AGL14_HALVD | Probable low-salt glycan biosynthesis reductase Agl14 OS=Haloferax volcanii (strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2) GN=agl14 PE=3 SV=1 | 28 | 194 | 4.0E-19 |
| sp|A0QTF8|RMLD_MYCS2 | dTDP-4-dehydrorhamnose reductase OS=Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) GN=rmlD PE=1 SV=1 | 22 | 172 | 3.0E-17 |
| sp|P26392|RMLD_SALTY | dTDP-4-dehydrorhamnose reductase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=rfbD PE=1 SV=1 | 26 | 173 | 5.0E-17 |
| sp|P29781|RMLD_STRGR | dTDP-4-dehydrorhamnose reductase OS=Streptomyces griseus GN=strL PE=1 SV=1 | 20 | 194 | 1.0E-16 |
| sp|P37778|RMLD_SHIFL | dTDP-4-dehydrorhamnose reductase OS=Shigella flexneri GN=rfbD PE=1 SV=2 | 26 | 177 | 4.0E-16 |
| sp|P37760|RMLD_ECOLI | dTDP-4-dehydrorhamnose reductase OS=Escherichia coli (strain K12) GN=rfbD PE=3 SV=2 | 26 | 177 | 2.0E-15 |
| sp|Q46769|RMLD_ECOLX | dTDP-4-dehydrorhamnose reductase OS=Escherichia coli GN=rfbD PE=1 SV=1 | 26 | 193 | 6.0E-15 |
| sp|Q9L9E9|NOVS_STRNV | dTDP-4-keto-6-deoxy-D-glucose reductase OS=Streptomyces niveus GN=novS PE=3 SV=1 | 28 | 291 | 2.0E-14 |
| sp|O66251|RMLD_AGGAC | dTDP-4-dehydrorhamnose reductase OS=Aggregatibacter actinomycetemcomitans GN=rmlD PE=1 SV=1 | 27 | 172 | 3.0E-12 |
| sp|P39631|SPSK_BACSU | Spore coat polysaccharide biosynthesis protein SpsK OS=Bacillus subtilis (strain 168) GN=spsK PE=3 SV=3 | 27 | 320 | 2.0E-11 |
| sp|Q2SYI1|RMLD_BURTA | dTDP-4-dehydrorhamnose reductase OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=rmlD PE=1 SV=1 | 27 | 189 | 1.0E-09 |
| sp|P9WH09|RMLD_MYCTU | dTDP-4-dehydrorhamnose reductase OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=rmlD PE=1 SV=1 | 22 | 178 | 2.0E-08 |
| sp|P9WH08|RMLD_MYCTO | dTDP-4-dehydrorhamnose reductase OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) GN=rmlD PE=3 SV=1 | 22 | 178 | 2.0E-08 |
| sp|P55463|RMLD_RHISN | Probable dTDP-4-dehydrorhamnose reductase OS=Rhizobium sp. (strain NGR234) GN=NGR_a03570 PE=3 SV=1 | 62 | 338 | 5.0E-07 |
| sp|Q56623|GALE_VIBCL | UDP-glucose 4-epimerase OS=Vibrio cholerae GN=galE PE=3 SV=1 | 17 | 194 | 1.0E-06 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 44 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 107.54 | 58.40 | 156.68 |
| CcL | In ants, during behavior modification | 87.99 | 45.05 | 130.93 |
| CcD | In ants, recently dead | 115.28 | 62.68 | 167.89 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.435096 | no |
| SC16a | CcD | 0.804417 | no |
| CcL | CcD | 0.268491 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|452 MPARQTTTTPPASSNQCASSPMAQRSVLVTGATGLLGREVVNAFRLGGWKVKGTGHSRADGVDVLRINLQNEDEV ARALDEIKPQVIVHCAAEKAPDRVAKDPQGARALNVAASASLARLAADPGRGILVIYISTDYVFPGTAGEAPYEA DDTPRPTNLYGQTKLDGERAVLDEFARAGKQGLGVVLRVPVLYGHAETPSESAVNSLLDSVWKAQTEGIEMTMDH WARRYPTNTEDVGRVCRDVAAKYLEAGSPQNLPRILQFSSQDEMTKYEICQRLGEMMGLSTAGIKPNMQGNEANS SAQRPYDCHLSTKGLEGLGIDVSTCEFSAWWRREVGAFRK |
| Coding | >Ophio5|452 ATGCCCGCCCGTCAAACTACGACCACTCCTCCTGCATCGTCCAACCAATGCGCAAGCTCTCCGATGGCTCAACGA TCCGTGCTCGTGACCGGTGCGACGGGCCTTCTTGGCCGAGAAGTAGTCAACGCTTTTCGGCTCGGCGGGTGGAAG GTCAAGGGCACAGGCCACTCTCGCGCAGACGGCGTCGACGTTCTCAGGATCAATCTGCAAAACGAGGACGAGGTG GCTCGAGCGCTGGACGAAATCAAACCGCAGGTCATCGTCCACTGCGCGGCCGAAAAGGCGCCTGATAGGGTGGCC AAGGACCCTCAGGGGGCGCGGGCGCTCAACGTGGCAGCCAGCGCAAGCCTCGCCAGGCTGGCGGCAGACCCAGGC CGAGGCATCCTGGTCATCTACATCTCGACCGACTACGTGTTCCCCGGCACGGCCGGCGAAGCGCCTTACGAGGCC GATGACACGCCCAGGCCCACGAACCTGTACGGGCAGACCAAGCTGGACGGCGAGCGCGCCGTGCTCGACGAGTTT GCGCGGGCGGGTAAGCAGGGCCTGGGCGTGGTGCTGCGCGTGCCGGTGCTGTACGGCCACGCAGAGACGCCTAGC GAGAGCGCCGTGAATAGCCTCCTGGACTCGGTCTGGAAAGCGCAGACGGAGGGAATCGAGATGACGATGGACCAC TGGGCGCGGCGGTACCCGACAAACACGGAAGATGTTGGACGCGTGTGTCGCGATGTGGCGGCCAAGTATCTCGAG GCTGGCTCGCCGCAAAACCTGCCGCGAATCCTGCAGTTCTCGAGCCAGGACGAGATGACAAAGTACGAGATATGT CAGCGGCTGGGCGAGATGATGGGCCTCTCGACGGCGGGCATCAAGCCAAACATGCAGGGAAATGAGGCCAATTCC TCGGCACAGAGGCCGTACGATTGCCACCTTAGTACCAAAGGCCTCGAAGGTCTGGGGATCGACGTATCGACGTGT GAATTTAGCGCATGGTGGCGGCGCGAAGTTGGTGCCTTTCGAAAG |
| Transcript | >Ophio5|452 ATGCCCGCCCGTCAAACTACGACCACTCCTCCTGCATCGTCCAACCAATGCGCAAGCTCTCCGATGGCTCAACGA TCCGTGCTCGTGACCGGTGCGACGGGCCTTCTTGGCCGAGAAGTAGTCAACGCTTTTCGGCTCGGCGGGTGGAAG GTCAAGGGCACAGGCCACTCTCGCGCAGACGGCGTCGACGTTCTCAGGATCAATCTGCAAAACGAGGACGAGGTG GCTCGAGCGCTGGACGAAATCAAACCGCAGGTCATCGTCCACTGCGCGGCCGAAAAGGCGCCTGATAGGGTGGCC AAGGACCCTCAGGGGGCGCGGGCGCTCAACGTGGCAGCCAGCGCAAGCCTCGCCAGGCTGGCGGCAGACCCAGGC CGAGGCATCCTGGTCATCTACATCTCGACCGACTACGTGTTCCCCGGCACGGCCGGCGAAGCGCCTTACGAGGCC GATGACACGCCCAGGCCCACGAACCTGTACGGGCAGACCAAGCTGGACGGCGAGCGCGCCGTGCTCGACGAGTTT GCGCGGGCGGGTAAGCAGGGCCTGGGCGTGGTGCTGCGCGTGCCGGTGCTGTACGGCCACGCAGAGACGCCTAGC GAGAGCGCCGTGAATAGCCTCCTGGACTCGGTCTGGAAAGCGCAGACGGAGGGAATCGAGATGACGATGGACCAC TGGGCGCGGCGGTACCCGACAAACACGGAAGATGTTGGACGCGTGTGTCGCGATGTGGCGGCCAAGTATCTCGAG GCTGGCTCGCCGCAAAACCTGCCGCGAATCCTGCAGTTCTCGAGCCAGGACGAGATGACAAAGTACGAGATATGT CAGCGGCTGGGCGAGATGATGGGCCTCTCGACGGCGGGCATCAAGCCAAACATGCAGGGAAATGAGGCCAATTCC TCGGCACAGAGGCCGTACGATTGCCACCTTAGTACCAAAGGCCTCGAAGGTCTGGGGATCGACGTATCGACGTGT GAATTTAGCGCATGGTGGCGGCGCGAAGTTGGTGCCTTTCGAAAGTGA |
| Gene | >Ophio5|452 ATGCCCGCCCGTCAAACTACGACCACTCCTCCTGCATCGTCCAACCAATGCGCAAGCTCTCCGATGGCTCAACGA TCCGTGCTCGTGACCGGTGCGACGGGCCTTCTTGGCCGAGAAGTAGTCAACGCTTTTCGGCTCGGCGGGTGGAAG GTCAAGGGCACAGGCCACTCTCGCGCAGACGGCGTCGACGTTCTCAGGATCAATCTGCAAAACGAGGACGAGGTG GCTCGAGCGCTGGACGAAATCAAGTCTGCCCCCCGAGCGAAGAGAGAGGCCCGCGAGCCGGCCGGCGGCTGACAC TCTTTGACCCCATGCGGAGCAGACCGCAGGTCATCGTCCACTGTGAGTGACAGGAGATTGTCTCTCATCCCCCAC CCCCCAAGGCAGGCAAGACAGCAGAGCATGACACAGGCCCGTTTATAGGCGCGGCCGAAAAGGCGCCTGATAGGG TGGCCAAGGACCCTCAGGGGGCGCGGGCGCTCAACGTGGCAGCCAGCGCAAGCCTCGCCAGGCTGGCGGCAGACC CAGGCCGAGGCATCCTGGTCATCTACATCTCGACCGACTACGTGTTCCCCGGCACGGCCGGCGAAGCGCCTTACG AGGCCGATGACACGCCCAGGCCCACGAACCTGTACGGGCAGACCAAGCTGGACGGCGAGCGCGCCGTGCTCGACG AGTTTGCGCGGGCGGGTAAGCAGGGCCTGGGCGTGGTGCTGCGCGTGCCGGTGCTGTACGGCCACGCAGAGACGC CTAGCGAGAGCGCCGTGAATAGCCTCCTGGACTCGGTCTGGAAAGCGCAGACGGAGGGAATCGAGATGACGATGG ACCACTGGGCGCGGCGGTACCCGACAAACACGGAAGATGTTGGACGCGTGTGTCGCGGTATGTCTCAGGAACCCC CCATCTTGAAGCGTACTGTTCGCATACACGAGCCTTTTCCGCATGCTGAGTCGCTCTAGATGTGGCGGCCAAGTA TCTCGAGGCTGGCTCGCCGCAAAACCTGCCGCGAATCCTGCAGTTCTCGAGCCAGGACGAGATGACAAAGTACGA GATATGTCAGCGGCTGGGCGAGATGATGGGCCTCTCGACGGCGGGCATCAAGCCAAACATGCAGGGAAATGAGGC CAATTCCTCGGCACAGAGGCCGTACGATTGCCACCTTAGTACCAAAGGCCTCGAAGGTCTGGGGATCGACGTATC GACGTGTGAATTTAGCGCATGGTGGCGGCGCGAAGTTGGTGCCTTTCGAAAGTGA |