Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|4483
Gene name
Locationscaffold_356:5104..5539
Strand-
Gene length (bp)435
Transcript length (bp)300
Coding sequence length (bp)297
Protein length (aa) 99

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PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 13 0.45

Transmembrane Domains

Domain # Start End Length
1 71 90 19

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|4483
MTRMPHSLRLAENQRSRIGLPNLATLAATGRDGKIQTTTLFRTRGSRLNLRFHPWKRVLTIRPLSRTQQRFLWLT
GFSFGSLGLYWLRIFKLPLISIDR
Coding >Ophio5|4483
ATGACACGAATGCCACATTCGCTTCGGCTGGCTGAAAATCAGCGCTCGCGAATTGGACTACCGAACCTGGCGACT
TTGGCCGCTACCGGAAGAGATGGCAAAATTCAAACGACAACTCTCTTCAGAACAAGAGGATCTCGCCTTAATCTA
CGATTCCATCCATGGAAGAGGGTTCTAACAATACGGCCGTTGTCGAGGACACAGCAGAGATTCCTATGGTTGACT
GGCTTTAGCTTTGGTTCATTGGGTTTATATTGGCTGAGAATTTTCAAGCTTCCTCTTATCTCCATAGACCGA
Transcript >Ophio5|4483
ATGACACGAATGCCACATTCGCTTCGGCTGGCTGAAAATCAGCGCTCGCGAATTGGACTACCGAACCTGGCGACT
TTGGCCGCTACCGGAAGAGATGGCAAAATTCAAACGACAACTCTCTTCAGAACAAGAGGATCTCGCCTTAATCTA
CGATTCCATCCATGGAAGAGGGTTCTAACAATACGGCCGTTGTCGAGGACACAGCAGAGATTCCTATGGTTGACT
GGCTTTAGCTTTGGTTCATTGGGTTTATATTGGCTGAGAATTTTCAAGCTTCCTCTTATCTCCATAGACCGATGA
Gene >Ophio5|4483
ATGACACGAATGCCACATTCGCTTCGGCTGGCTGAAAATCAGCGCTCGCGAATTGGACTACCGAACCTGGCGACT
TTGGCCGCTACCGGAAGAGATGGCAAAATTCAAACGACAACTCTCTTCAGAACAAGAGGATCTCGCCTTAATCTA
CGATTCCATCCATGGAAGAGGGTTCTAACAATACGGCCGTTGTCGAGGACACAGCAGAGATTCCTATGGTTGACT
GGCTTTAGCTTTGGTTCATTGGGTTTATATTGGCTGAGAATTTTCAAGGTACTGTAGCATTTTGGTTGATCTTTG
TGGTGTCGTCTATGCGAGCGGCTACGGACTTTCGACAATTCGGACCTAGGACGGCCCTCGATCTTTTGTGACCCT
AGTATTGATCCATATGCTGATAGTTGTTATCAGCTTCCTCTTATCTCCATAGACCGATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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