Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|447
Gene name
Locationscaffold_110:10022..10763
Strand+
Gene length (bp)741
Transcript length (bp)741
Coding sequence length (bp)738
Protein length (aa) 246

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PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

SignalP

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SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 19 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 0.47 0.0 1.37
CcL In ants, during behavior modification 1.94 0.0 4.01
CcD In ants, recently dead 0.73 0.0 1.86

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 0.100260 no
SC16a CcD 1.000000 no
CcL CcD 0.165072 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|447
MKYAYTVMSLVLAVPALADNCAYKCIESYNSCQSKSGANMAQCASEYASCLGYNPFSGNTYTTPTACSQGMAPTP
YPPKPYPTPSSESYPSPYPNPSPYSKPAPYPTPAGNQDCAKSCEEKFYACRNRYGTNIATCSSEKAACMASCGQS
RAPAPPPYPTPAGKKDCAQTCEEKFNGCRNKYGANISTCSSEKAACLAACGQTPAPTTKTDYSSETSIPVYVAGG
ENIKPTVAGWTFGLGALMMFL
Coding >Ophio5|447
ATGAAGTACGCTTACACCGTCATGAGCCTGGTCCTGGCCGTGCCCGCTCTGGCCGACAATTGCGCCTACAAGTGC
ATCGAATCCTACAACTCGTGCCAGAGCAAGTCAGGAGCCAACATGGCCCAGTGCGCCTCTGAATATGCCAGCTGC
CTTGGCTACAACCCCTTCTCCGGCAACACTTACACGACACCCACCGCCTGTTCGCAGGGCATGGCGCCCACGCCT
TACCCTCCTAAACCTTACCCTACCCCTTCTTCCGAGTCTTACCCATCGCCTTATCCTAACCCCTCTCCATACTCC
AAGCCCGCCCCTTACCCTACCCCTGCCGGCAATCAAGACTGCGCCAAGTCCTGCGAGGAGAAGTTTTACGCTTGC
CGCAACAGATACGGAACCAACATCGCGACCTGCTCGTCCGAGAAGGCTGCTTGTATGGCCTCCTGTGGCCAGTCT
CGAGCTCCGGCACCTCCCCCTTACCCTACCCCGGCCGGCAAGAAAGACTGTGCCCAAACGTGCGAGGAAAAGTTC
AACGGTTGCCGCAACAAGTACGGAGCCAACATCTCTACTTGCTCTTCGGAGAAGGCTGCTTGTCTAGCCGCCTGT
GGCCAGACCCCGGCGCCTACCACCAAGACGGATTACTCTAGCGAAACGTCGATCCCAGTCTACGTCGCTGGTGGC
GAGAACATCAAGCCCACTGTCGCTGGTTGGACCTTCGGTCTTGGAGCGTTGATGATGTTCTTG
Transcript >Ophio5|447
ATGAAGTACGCTTACACCGTCATGAGCCTGGTCCTGGCCGTGCCCGCTCTGGCCGACAATTGCGCCTACAAGTGC
ATCGAATCCTACAACTCGTGCCAGAGCAAGTCAGGAGCCAACATGGCCCAGTGCGCCTCTGAATATGCCAGCTGC
CTTGGCTACAACCCCTTCTCCGGCAACACTTACACGACACCCACCGCCTGTTCGCAGGGCATGGCGCCCACGCCT
TACCCTCCTAAACCTTACCCTACCCCTTCTTCCGAGTCTTACCCATCGCCTTATCCTAACCCCTCTCCATACTCC
AAGCCCGCCCCTTACCCTACCCCTGCCGGCAATCAAGACTGCGCCAAGTCCTGCGAGGAGAAGTTTTACGCTTGC
CGCAACAGATACGGAACCAACATCGCGACCTGCTCGTCCGAGAAGGCTGCTTGTATGGCCTCCTGTGGCCAGTCT
CGAGCTCCGGCACCTCCCCCTTACCCTACCCCGGCCGGCAAGAAAGACTGTGCCCAAACGTGCGAGGAAAAGTTC
AACGGTTGCCGCAACAAGTACGGAGCCAACATCTCTACTTGCTCTTCGGAGAAGGCTGCTTGTCTAGCCGCCTGT
GGCCAGACCCCGGCGCCTACCACCAAGACGGATTACTCTAGCGAAACGTCGATCCCAGTCTACGTCGCTGGTGGC
GAGAACATCAAGCCCACTGTCGCTGGTTGGACCTTCGGTCTTGGAGCGTTGATGATGTTCTTGTAG
Gene >Ophio5|447
ATGAAGTACGCTTACACCGTCATGAGCCTGGTCCTGGCCGTGCCCGCTCTGGCCGACAATTGCGCCTACAAGTGC
ATCGAATCCTACAACTCGTGCCAGAGCAAGTCAGGAGCCAACATGGCCCAGTGCGCCTCTGAATATGCCAGCTGC
CTTGGCTACAACCCCTTCTCCGGCAACACTTACACGACACCCACCGCCTGTTCGCAGGGCATGGCGCCCACGCCT
TACCCTCCTAAACCTTACCCTACCCCTTCTTCCGAGTCTTACCCATCGCCTTATCCTAACCCCTCTCCATACTCC
AAGCCCGCCCCTTACCCTACCCCTGCCGGCAATCAAGACTGCGCCAAGTCCTGCGAGGAGAAGTTTTACGCTTGC
CGCAACAGATACGGAACCAACATCGCGACCTGCTCGTCCGAGAAGGCTGCTTGTATGGCCTCCTGTGGCCAGTCT
CGAGCTCCGGCACCTCCCCCTTACCCTACCCCGGCCGGCAAGAAAGACTGTGCCCAAACGTGCGAGGAAAAGTTC
AACGGTTGCCGCAACAAGTACGGAGCCAACATCTCTACTTGCTCTTCGGAGAAGGCTGCTTGTCTAGCCGCCTGT
GGCCAGACCCCGGCGCCTACCACCAAGACGGATTACTCTAGCGAAACGTCGATCCCAGTCTACGTCGCTGGTGGC
GAGAACATCAAGCCCACTGTCGCTGGTTGGACCTTCGGTCTTGGAGCGTTGATGATGTTCTTGTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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