Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|4453
Gene name
Locationscaffold_353:1628..2240
Strand-
Gene length (bp)612
Transcript length (bp)558
Coding sequence length (bp)555
Protein length (aa) 185

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF05532 CsbD CsbD-like 3.2E-12 79 127

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 31 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|4453
MPESENKSSAPSTLGSYVTSAAGAVQSAVGSLTGNAVDQNKGEARKEEAKAEHDASHAAIKVPGATVSSSGAVAK
DDKNRTEGSWNQTVGSAKEAVGGLVGNESLKQTGREQNLEGQKQETKGQLNDMGSGLASRAQGTVGGAVAGLTGD
KKGQEHYEQMRAEGKSQQRGVEHDMQKQVETEDKK
Coding >Ophio5|4453
ATGCCCGAGTCGGAGAACAAGTCCAGCGCACCCTCGACGCTCGGGTCGTACGTAACGTCGGCCGCCGGTGCCGTG
CAGAGCGCCGTCGGCAGCCTGACGGGCAACGCGGTCGATCAGAACAAGGGCGAGGCGCGCAAGGAGGAGGCCAAG
GCCGAGCACGACGCCTCCCACGCAGCTATCAAAGTGCCCGGCGCGACGGTGTCGAGCTCGGGCGCCGTAGCCAAG
GACGACAAGAATCGCACAGAGGGCTCGTGGAACCAGACGGTCGGCTCCGCCAAGGAGGCGGTCGGTGGACTCGTC
GGAAACGAGTCGCTCAAGCAGACGGGCCGCGAGCAGAACCTCGAAGGCCAGAAGCAGGAGACCAAGGGCCAGCTC
AACGACATGGGCTCCGGCTTGGCTAGCCGCGCGCAGGGCACCGTTGGGGGCGCTGTGGCTGGCTTGACGGGCGAC
AAGAAGGGCCAGGAGCATTACGAGCAGATGCGGGCCGAGGGCAAATCGCAGCAGCGAGGTGTTGAGCACGACATG
CAGAAGCAGGTGGAGACTGAGGACAAGAAG
Transcript >Ophio5|4453
ATGCCCGAGTCGGAGAACAAGTCCAGCGCACCCTCGACGCTCGGGTCGTACGTAACGTCGGCCGCCGGTGCCGTG
CAGAGCGCCGTCGGCAGCCTGACGGGCAACGCGGTCGATCAGAACAAGGGCGAGGCGCGCAAGGAGGAGGCCAAG
GCCGAGCACGACGCCTCCCACGCAGCTATCAAAGTGCCCGGCGCGACGGTGTCGAGCTCGGGCGCCGTAGCCAAG
GACGACAAGAATCGCACAGAGGGCTCGTGGAACCAGACGGTCGGCTCCGCCAAGGAGGCGGTCGGTGGACTCGTC
GGAAACGAGTCGCTCAAGCAGACGGGCCGCGAGCAGAACCTCGAAGGCCAGAAGCAGGAGACCAAGGGCCAGCTC
AACGACATGGGCTCCGGCTTGGCTAGCCGCGCGCAGGGCACCGTTGGGGGCGCTGTGGCTGGCTTGACGGGCGAC
AAGAAGGGCCAGGAGCATTACGAGCAGATGCGGGCCGAGGGCAAATCGCAGCAGCGAGGTGTTGAGCACGACATG
CAGAAGCAGGTGGAGACTGAGGACAAGAAGTAG
Gene >Ophio5|4453
ATGCCCGAGTCGGAGAACAAGTCCAGCGCACCCTCGACGCTCGGGTCGTACGTAACGTCGGCCGCCGGTGCCGTG
CAGAGCGCCGTCGGCAGCCTGACGGGCAACGCGGTCGATCAGAACAAGGGCGAGGCGCGCAAGGAGGAGGCCAAG
GCCGAGCACGACGCCTCCCACGCAGCTATCAAAGTGCCCGGCGCGACGGTGTCGAGCTCGGGCGCCGTAGCCAAG
GACGACAAGAATCGCACAGAGGGCTCGTGGAACCAGACGGTCGGCTCCGCCAAGGAGGCGGTCGGTGGACTCGTC
GGAAACGAGGTGGGCAATGGTACTCTCACATAGCCGTCGTCCAAGCACTGACACGGGACGCAGTCGCTCAAGCAG
ACGGGCCGCGAGCAGAACCTCGAAGGCCAGAAGCAGGAGACCAAGGGCCAGCTCAACGACATGGGCTCCGGCTTG
GCTAGCCGCGCGCAGGGCACCGTTGGGGGCGCTGTGGCTGGCTTGACGGGCGACAAGAAGGGCCAGGAGCATTAC
GAGCAGATGCGGGCCGAGGGCAAATCGCAGCAGCGAGGTGTTGAGCACGACATGCAGAAGCAGGTGGAGACTGAG
GACAAGAAGTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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