Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|4445
Gene name
Locationscaffold_352:238..943
Strand+
Gene length (bp)705
Transcript length (bp)705
Coding sequence length (bp)702
Protein length (aa) 234

Overview

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PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Extracellular Signal peptide 0.1543 0.1075 0.9437 0.1988 0.0428 0.0088 0.2192 0.1758 0.1125 0.0034

SignalP

SignalP signal predicted Location Score
Yes 1 - 22 0.999775

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 93.61 49.25 137.96
CcL In ants, during behavior modification 792.97 101.06 1484.88
CcD In ants, recently dead 327.94 168.47 487.42

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 0.000286 yes
SC16a CcD 0.000286 yes
CcL CcD 0.021588 yes

Orthologs

Orthofinder run ID4
Orthogroup6209
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|2017
Ophiocordyceps australis map64 (Brazil) OphauB2|5518
Ophiocordyceps camponoti-rufipedis Ophun1|4943
Ophiocordyceps kimflemingae Ophio5|4445 (this protein)
Ophiocordyceps subramaniannii Hirsu2|6405

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|4445
MAGSLYQSLILSLSLLLAGVSATQAGDAGRLGLIIDNPYPNPSASSIGGSCNLVLPLVQTINLGPVKTVYTATVT
KTRLLECAACAKVTVSWLPLGIPPVARFTTTETAKTASTTSVLGCRSYSSSSSTKPSPKFYGLPRAFEKATVVKP
PNMSSKPTCTSSTLQRPGEVPGATYTAWTSTVTSTSTIDCGNCALAWSTAAIQFLVPVQYTATVSPASPSTKTDF
ECLPTDEPY
Coding >Ophio5|4445
ATGGCCGGCTCACTCTACCAAAGCCTGATTCTAAGCCTCAGCCTCCTCCTCGCGGGCGTGTCAGCGACGCAAGCG
GGAGACGCAGGACGACTGGGGCTCATCATCGACAACCCTTACCCCAACCCGTCGGCCTCGTCCATCGGCGGCTCC
TGCAACTTAGTACTCCCGCTTGTGCAGACGATCAATCTCGGACCGGTCAAGACGGTGTATACGGCGACGGTGACC
AAGACTCGTCTGTTGGAATGCGCCGCCTGCGCCAAGGTGACCGTCTCCTGGCTTCCTCTCGGCATCCCGCCCGTC
GCTCGCTTCACCACGACGGAGACGGCGAAAACAGCTTCGACGACGAGCGTGCTAGGCTGCAGGAGTTATTCCTCC
TCCTCCTCCACCAAGCCTTCACCCAAATTCTACGGTCTCCCTCGTGCTTTCGAAAAAGCTACGGTGGTGAAGCCG
CCCAACATGAGTTCGAAACCGACGTGTACCAGCAGCACGCTTCAACGACCGGGTGAAGTTCCCGGTGCGACGTAT
ACGGCTTGGACCTCGACCGTCACATCGACGAGTACTATTGATTGTGGGAATTGTGCTCTGGCTTGGTCCACGGCC
GCTATTCAGTTCTTGGTCCCCGTTCAGTATACTGCCACCGTGTCTCCTGCTTCGCCTAGCACCAAGACCGATTTC
GAGTGCTTGCCTACCGATGAGCCTTAT
Transcript >Ophio5|4445
ATGGCCGGCTCACTCTACCAAAGCCTGATTCTAAGCCTCAGCCTCCTCCTCGCGGGCGTGTCAGCGACGCAAGCG
GGAGACGCAGGACGACTGGGGCTCATCATCGACAACCCTTACCCCAACCCGTCGGCCTCGTCCATCGGCGGCTCC
TGCAACTTAGTACTCCCGCTTGTGCAGACGATCAATCTCGGACCGGTCAAGACGGTGTATACGGCGACGGTGACC
AAGACTCGTCTGTTGGAATGCGCCGCCTGCGCCAAGGTGACCGTCTCCTGGCTTCCTCTCGGCATCCCGCCCGTC
GCTCGCTTCACCACGACGGAGACGGCGAAAACAGCTTCGACGACGAGCGTGCTAGGCTGCAGGAGTTATTCCTCC
TCCTCCTCCACCAAGCCTTCACCCAAATTCTACGGTCTCCCTCGTGCTTTCGAAAAAGCTACGGTGGTGAAGCCG
CCCAACATGAGTTCGAAACCGACGTGTACCAGCAGCACGCTTCAACGACCGGGTGAAGTTCCCGGTGCGACGTAT
ACGGCTTGGACCTCGACCGTCACATCGACGAGTACTATTGATTGTGGGAATTGTGCTCTGGCTTGGTCCACGGCC
GCTATTCAGTTCTTGGTCCCCGTTCAGTATACTGCCACCGTGTCTCCTGCTTCGCCTAGCACCAAGACCGATTTC
GAGTGCTTGCCTACCGATGAGCCTTATTAG
Gene >Ophio5|4445
ATGGCCGGCTCACTCTACCAAAGCCTGATTCTAAGCCTCAGCCTCCTCCTCGCGGGCGTGTCAGCGACGCAAGCG
GGAGACGCAGGACGACTGGGGCTCATCATCGACAACCCTTACCCCAACCCGTCGGCCTCGTCCATCGGCGGCTCC
TGCAACTTAGTACTCCCGCTTGTGCAGACGATCAATCTCGGACCGGTCAAGACGGTGTATACGGCGACGGTGACC
AAGACTCGTCTGTTGGAATGCGCCGCCTGCGCCAAGGTGACCGTCTCCTGGCTTCCTCTCGGCATCCCGCCCGTC
GCTCGCTTCACCACGACGGAGACGGCGAAAACAGCTTCGACGACGAGCGTGCTAGGCTGCAGGAGTTATTCCTCC
TCCTCCTCCACCAAGCCTTCACCCAAATTCTACGGTCTCCCTCGTGCTTTCGAAAAAGCTACGGTGGTGAAGCCG
CCCAACATGAGTTCGAAACCGACGTGTACCAGCAGCACGCTTCAACGACCGGGTGAAGTTCCCGGTGCGACGTAT
ACGGCTTGGACCTCGACCGTCACATCGACGAGTACTATTGATTGTGGGAATTGTGCTCTGGCTTGGTCCACGGCC
GCTATTCAGTTCTTGGTCCCCGTTCAGTATACTGCCACCGTGTCTCCTGCTTCGCCTAGCACCAAGACCGATTTC
GAGTGCTTGCCTACCGATGAGCCTTATTAG

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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