Protein ID | Ophio5|4372 |
Gene name | |
Location | scaffold_347:681..3614 |
Strand | - |
Gene length (bp) | 2933 |
Transcript length (bp) | 2619 |
Coding sequence length (bp) | 2616 |
Protein length (aa) | 872 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF05347 | Complex1_LYR | Complex 1 protein (LYR family) | 7.3E-16 | 8 | 66 |
PF13233 | Complex1_LYR_2 | Complex1_LYR-like | 8.7E-05 | 10 | 56 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|Q9US02|SDHF1_SCHPO | Succinate dehydrogenase assembly factor 1, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC664.12c PE=3 SV=1 | 1 | 76 | 3.0E-13 |
sp|Q3E785|SDHF1_YEAST | Succinate dehydrogenase assembly factor 1, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SDH6 PE=1 SV=1 | 2 | 76 | 2.0E-11 |
sp|A6ZYX9|SDHF1_YEAS7 | Succinate dehydrogenase assembly factor 1, mitochondrial OS=Saccharomyces cerevisiae (strain YJM789) GN=SCY_1267 PE=3 SV=1 | 2 | 76 | 2.0E-11 |
sp|B0K036|SDHF1_RAT | Succinate dehydrogenase assembly factor 1, mitochondrial OS=Rattus norvegicus GN=Sdhaf1 PE=3 SV=1 | 2 | 83 | 3.0E-10 |
sp|A6NFY7|SDHF1_HUMAN | Succinate dehydrogenase assembly factor 1, mitochondrial OS=Homo sapiens GN=SDHAF1 PE=1 SV=1 | 2 | 106 | 3.0E-09 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|Q9US02|SDHF1_SCHPO | Succinate dehydrogenase assembly factor 1, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC664.12c PE=3 SV=1 | 1 | 76 | 3.0E-13 |
sp|Q3E785|SDHF1_YEAST | Succinate dehydrogenase assembly factor 1, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SDH6 PE=1 SV=1 | 2 | 76 | 2.0E-11 |
sp|A6ZYX9|SDHF1_YEAS7 | Succinate dehydrogenase assembly factor 1, mitochondrial OS=Saccharomyces cerevisiae (strain YJM789) GN=SCY_1267 PE=3 SV=1 | 2 | 76 | 2.0E-11 |
sp|B0K036|SDHF1_RAT | Succinate dehydrogenase assembly factor 1, mitochondrial OS=Rattus norvegicus GN=Sdhaf1 PE=3 SV=1 | 2 | 83 | 3.0E-10 |
sp|A6NFY7|SDHF1_HUMAN | Succinate dehydrogenase assembly factor 1, mitochondrial OS=Homo sapiens GN=SDHAF1 PE=1 SV=1 | 2 | 106 | 3.0E-09 |
sp|Q3U276|SDHF1_MOUSE | Succinate dehydrogenase assembly factor 1, mitochondrial OS=Mus musculus GN=Sdhaf1 PE=1 SV=1 | 6 | 83 | 8.0E-09 |
sp|A8PU71|SDHF1_BOVIN | Succinate dehydrogenase assembly factor 1, mitochondrial OS=Bos taurus GN=SDHAF1 PE=3 SV=1 | 2 | 80 | 3.0E-08 |
sp|Q54HG5|SDHFA_DICDI | Succinate dehydrogenase assembly factor 1A, mitochondrial OS=Dictyostelium discoideum GN=sdhaf1A PE=3 SV=1 | 1 | 79 | 4.0E-06 |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 11 | 0.45 |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ophio5|4372 MRLSGLQKDVLCLYRQCLRASRRKPEDTRSHFESFVRAEFTRHMSIDKRDFDTIEFLLRKGRRQLQVYAAPDIKD LFQFLAPQLAAVCFPRRRSPPVSPPKHDASGPLMISQFKSTLSCHYSVTNIKMATLASIPEASTLLPNTHDSRPL QRTASFERIRPRSRVLILSRRPTRVRNPARRAPVAAAPRQASGQRHPPAEVSCRASSHLEASDVTPGDAPKAPQR SHSRPPYHRFDSASPTDQALETSVSSVDLDSFPLPPSHRGLAKRSSPNPQAGPNRDGAISPTRDGPFSSARRCFG EVAADVARASKHSSIDSTLVEAISRTIAQQFRLLSVAKYADRELIHPSRSSFSPSFAHASRPEKPRRRDSLDRFT ADLYKYAYNTGPRDEAEQSSPDPPRSGESLHTVSALMPFRPEFRAAGLAVTSKDQAERSPGYLSRAYASLRSRQL LSKAPRNRNLHASQIDGPGEVPSSSTNTEISFAPSQADEWRSALIEEVPVRKKKRGKKAKRQRKSCFPCFRGKEK PAADGDWAHFREAPEKPAADRHAAWESRPTRPRLPPILQTAETRPSRFDSVPRSPKHVSIPQPMIKRKDINALPK SVARPRGQATKDKQPTTLPTNLAPFKTQSGAFPRRDGDKRRKPGSRREPVILSSKTDRQASGRETGRVPSKAKAG DMPEEDHGHALSALPSTWFRQDGPIPDLEEELEKTARLVANTKPSATSRRPTTSTRRQKQPTLRYDPNHMGICCR SSRGLPSRATAPPNIPMRTSSVKGSVSSDADDEGIKDGDVLRGLHVAASAACDQEVDAFVRDQTGLRIRRFLADL MTLEAFGHPLPGEGSEQRAWRRRAEMRPLKRRVRRSRELSGVAGGFI |
Coding | >Ophio5|4372 ATGCGTCTCTCCGGCCTCCAGAAAGACGTGCTATGCTTGTACCGCCAATGCCTCCGCGCCAGCCGCAGGAAGCCC GAGGACACCCGCTCTCACTTCGAGTCCTTCGTCAGGGCCGAGTTTACTCGCCACATGAGCATCGACAAGCGCGAC TTTGACACGATCGAGTTCCTACTGCGCAAAGGCCGAAGACAGCTACAGGTGTACGCTGCTCCCGACATCAAAGAT CTCTTCCAGTTCTTAGCTCCCCAGCTTGCCGCTGTCTGCTTTCCTCGGCGCCGCTCACCTCCAGTCTCTCCTCCC AAGCACGACGCGTCTGGACCACTGATGATTTCCCAGTTCAAGTCCACCTTGTCCTGTCATTACTCTGTCACCAAC ATCAAGATGGCTACTCTAGCATCAATTCCAGAGGCAAGCACTTTGTTGCCCAACACGCACGACTCCCGACCGCTT CAGCGGACTGCTTCCTTTGAGAGAATTCGGCCGCGATCTCGTGTCTTGATACTCTCCAGACGCCCAACCCGTGTC CGCAACCCGGCTCGGCGTGCGCCAGTCGCGGCGGCGCCGCGTCAAGCAAGTGGTCAGAGACATCCGCCTGCAGAG GTTTCCTGCCGAGCGAGCTCTCACTTGGAGGCGAGCGACGTGACTCCAGGTGACGCTCCAAAGGCACCGCAAAGA AGCCACAGCCGGCCGCCATACCACCGGTTCGATTCGGCCTCACCAACCGACCAGGCGCTGGAGACTTCTGTCTCT TCCGTCGACTTGGACTCGTTCCCTCTTCCGCCCTCGCATCGCGGGCTTGCGAAAAGGTCTTCGCCGAACCCTCAG GCGGGGCCAAATCGGGATGGTGCCATTTCGCCCACCAGGGATGGGCCTTTCTCGAGTGCGCGGCGGTGCTTTGGC GAGGTTGCCGCCGATGTTGCCAGAGCCTCGAAGCACTCGTCCATAGATTCTACTCTCGTCGAAGCCATCTCAAGA ACCATCGCTCAGCAGTTCCGCCTCCTCTCCGTCGCCAAGTACGCCGACCGGGAATTGATTCATCCATCAAGATCC AGCTTCTCACCTTCATTTGCCCATGCCAGCCGACCTGAAAAACCAAGACGTCGGGATTCCCTTGATCGTTTTACC GCTGACCTCTACAAATACGCATACAACACTGGGCCCAGGGATGAAGCTGAGCAATCGTCACCCGATCCTCCCAGG TCTGGGGAGAGCCTTCACACAGTGTCTGCCCTGATGCCCTTCCGTCCAGAGTTTAGGGCGGCAGGGCTCGCCGTG ACATCCAAGGATCAAGCCGAACGCAGTCCTGGCTACTTGTCGAGAGCATACGCGTCGCTGCGGTCACGTCAACTT CTATCCAAAGCCCCTCGAAACAGGAATCTGCACGCGTCTCAAATCGACGGGCCAGGGGAGGTCCCGAGCTCCAGC ACAAACACTGAGATCTCCTTCGCTCCGAGCCAGGCGGACGAATGGAGAAGTGCCCTGATCGAAGAGGTGCCGGTG CGGAAAAAGAAGCGAGGCAAAAAGGCAAAAAGGCAAAGAAAGTCTTGTTTTCCGTGTTTTCGTGGCAAGGAAAAG CCCGCCGCCGACGGAGATTGGGCACACTTCAGAGAAGCCCCGGAGAAGCCAGCTGCAGACCGCCATGCCGCGTGG GAATCAAGGCCGACAAGGCCCAGACTGCCGCCCATCCTCCAGACGGCAGAAACTCGACCCTCGCGTTTTGACTCT GTCCCCCGAAGCCCTAAACATGTGTCGATACCACAGCCGATGATCAAAAGAAAGGATATAAACGCTCTGCCTAAG TCTGTGGCGCGGCCGCGAGGGCAGGCGACCAAGGACAAGCAACCGACGACCCTGCCCACGAATTTGGCGCCTTTC AAGACTCAATCCGGCGCATTTCCGCGCCGAGATGGCGACAAGAGACGCAAGCCGGGTTCCAGAAGAGAGCCAGTG ATTTTGTCGTCGAAGACTGATCGGCAAGCGTCTGGCCGTGAGACGGGCCGAGTTCCCTCCAAGGCGAAGGCGGGC GATATGCCGGAAGAGGATCACGGTCACGCCTTGTCGGCGTTGCCTTCGACTTGGTTCCGCCAGGATGGTCCCATC CCGGACCTGGAGGAGGAGCTCGAAAAGACGGCACGACTAGTTGCAAATACTAAACCTTCAGCCACAAGCAGACGA CCGACGACGTCGACTCGGCGGCAGAAGCAGCCGACGCTCCGCTACGACCCAAACCACATGGGCATATGCTGCCGC AGCAGCAGGGGGCTCCCTTCCCGGGCCACGGCCCCGCCCAATATCCCCATGAGAACCTCATCCGTCAAGGGCAGT GTCAGCTCCGACGCGGACGACGAGGGCATCAAAGACGGCGACGTCTTGCGCGGGTTGCACGTGGCGGCTTCGGCT GCTTGCGACCAGGAAGTGGATGCCTTCGTGCGCGACCAGACGGGGCTGCGGATCCGCCGCTTCCTGGCCGACTTG ATGACGCTTGAAGCCTTTGGTCATCCGCTGCCGGGGGAGGGCAGCGAGCAGCGGGCGTGGCGGAGGAGGGCGGAG ATGAGGCCGCTGAAGCGACGTGTCCGCCGTTCGCGCGAGCTGTCGGGCGTCGCTGGGGGGTTCATC |
Transcript | >Ophio5|4372 ATGCGTCTCTCCGGCCTCCAGAAAGACGTGCTATGCTTGTACCGCCAATGCCTCCGCGCCAGCCGCAGGAAGCCC GAGGACACCCGCTCTCACTTCGAGTCCTTCGTCAGGGCCGAGTTTACTCGCCACATGAGCATCGACAAGCGCGAC TTTGACACGATCGAGTTCCTACTGCGCAAAGGCCGAAGACAGCTACAGGTGTACGCTGCTCCCGACATCAAAGAT CTCTTCCAGTTCTTAGCTCCCCAGCTTGCCGCTGTCTGCTTTCCTCGGCGCCGCTCACCTCCAGTCTCTCCTCCC AAGCACGACGCGTCTGGACCACTGATGATTTCCCAGTTCAAGTCCACCTTGTCCTGTCATTACTCTGTCACCAAC ATCAAGATGGCTACTCTAGCATCAATTCCAGAGGCAAGCACTTTGTTGCCCAACACGCACGACTCCCGACCGCTT CAGCGGACTGCTTCCTTTGAGAGAATTCGGCCGCGATCTCGTGTCTTGATACTCTCCAGACGCCCAACCCGTGTC CGCAACCCGGCTCGGCGTGCGCCAGTCGCGGCGGCGCCGCGTCAAGCAAGTGGTCAGAGACATCCGCCTGCAGAG GTTTCCTGCCGAGCGAGCTCTCACTTGGAGGCGAGCGACGTGACTCCAGGTGACGCTCCAAAGGCACCGCAAAGA AGCCACAGCCGGCCGCCATACCACCGGTTCGATTCGGCCTCACCAACCGACCAGGCGCTGGAGACTTCTGTCTCT TCCGTCGACTTGGACTCGTTCCCTCTTCCGCCCTCGCATCGCGGGCTTGCGAAAAGGTCTTCGCCGAACCCTCAG GCGGGGCCAAATCGGGATGGTGCCATTTCGCCCACCAGGGATGGGCCTTTCTCGAGTGCGCGGCGGTGCTTTGGC GAGGTTGCCGCCGATGTTGCCAGAGCCTCGAAGCACTCGTCCATAGATTCTACTCTCGTCGAAGCCATCTCAAGA ACCATCGCTCAGCAGTTCCGCCTCCTCTCCGTCGCCAAGTACGCCGACCGGGAATTGATTCATCCATCAAGATCC AGCTTCTCACCTTCATTTGCCCATGCCAGCCGACCTGAAAAACCAAGACGTCGGGATTCCCTTGATCGTTTTACC GCTGACCTCTACAAATACGCATACAACACTGGGCCCAGGGATGAAGCTGAGCAATCGTCACCCGATCCTCCCAGG TCTGGGGAGAGCCTTCACACAGTGTCTGCCCTGATGCCCTTCCGTCCAGAGTTTAGGGCGGCAGGGCTCGCCGTG ACATCCAAGGATCAAGCCGAACGCAGTCCTGGCTACTTGTCGAGAGCATACGCGTCGCTGCGGTCACGTCAACTT CTATCCAAAGCCCCTCGAAACAGGAATCTGCACGCGTCTCAAATCGACGGGCCAGGGGAGGTCCCGAGCTCCAGC ACAAACACTGAGATCTCCTTCGCTCCGAGCCAGGCGGACGAATGGAGAAGTGCCCTGATCGAAGAGGTGCCGGTG CGGAAAAAGAAGCGAGGCAAAAAGGCAAAAAGGCAAAGAAAGTCTTGTTTTCCGTGTTTTCGTGGCAAGGAAAAG CCCGCCGCCGACGGAGATTGGGCACACTTCAGAGAAGCCCCGGAGAAGCCAGCTGCAGACCGCCATGCCGCGTGG GAATCAAGGCCGACAAGGCCCAGACTGCCGCCCATCCTCCAGACGGCAGAAACTCGACCCTCGCGTTTTGACTCT GTCCCCCGAAGCCCTAAACATGTGTCGATACCACAGCCGATGATCAAAAGAAAGGATATAAACGCTCTGCCTAAG TCTGTGGCGCGGCCGCGAGGGCAGGCGACCAAGGACAAGCAACCGACGACCCTGCCCACGAATTTGGCGCCTTTC AAGACTCAATCCGGCGCATTTCCGCGCCGAGATGGCGACAAGAGACGCAAGCCGGGTTCCAGAAGAGAGCCAGTG ATTTTGTCGTCGAAGACTGATCGGCAAGCGTCTGGCCGTGAGACGGGCCGAGTTCCCTCCAAGGCGAAGGCGGGC GATATGCCGGAAGAGGATCACGGTCACGCCTTGTCGGCGTTGCCTTCGACTTGGTTCCGCCAGGATGGTCCCATC CCGGACCTGGAGGAGGAGCTCGAAAAGACGGCACGACTAGTTGCAAATACTAAACCTTCAGCCACAAGCAGACGA CCGACGACGTCGACTCGGCGGCAGAAGCAGCCGACGCTCCGCTACGACCCAAACCACATGGGCATATGCTGCCGC AGCAGCAGGGGGCTCCCTTCCCGGGCCACGGCCCCGCCCAATATCCCCATGAGAACCTCATCCGTCAAGGGCAGT GTCAGCTCCGACGCGGACGACGAGGGCATCAAAGACGGCGACGTCTTGCGCGGGTTGCACGTGGCGGCTTCGGCT GCTTGCGACCAGGAAGTGGATGCCTTCGTGCGCGACCAGACGGGGCTGCGGATCCGCCGCTTCCTGGCCGACTTG ATGACGCTTGAAGCCTTTGGTCATCCGCTGCCGGGGGAGGGCAGCGAGCAGCGGGCGTGGCGGAGGAGGGCGGAG ATGAGGCCGCTGAAGCGACGTGTCCGCCGTTCGCGCGAGCTGTCGGGCGTCGCTGGGGGGTTCATCTGA |
Gene | >Ophio5|4372 ATGCGTCTCTCCGGCCTCCAGAAAGACGTGCTATGCTTGTACCGCCAATGCCTCCGCGCCAGCCGCAGGAAGCCC GAGGTGAAGTCCTCCCGAGTCTCCCGAGTGCGGACTGCAATCTTGGCTGACTTCCCACGACAGGACACCCGCTCT CACTTCGAGTCCTTCGTCAGGTGGGCCTTCTCGGATGGATATCATGAGCTGGGCCTGATCATTACTGAGCTTCCG CCGTCTCCCCTTCCTGCCTACCTAGGGCCGAGTTTACTCGCCACATGAGCATCGACAAGCGCGACTTTGACACGA TCGAGTTCCTACTGCGCAAAGGCCGAAGACAGCTACAGGTGTACGCTGCTCCCGACATCAAAGATGTCAGGTGAG GTCCTCAGCCCCGGAGGCGACTGCCACGCCTCTTCCAGCTCTTCCAGTTCTTAGCTCCCCAGCTTGCCGCTGTCT GCTTTCCTCGGCGCCGCTCACCTCCAGTCTCTCCTCCCAAGCACGACGCGTCTGGACCACTGATGATTGTCCTTT TCGCGGGAATCAGCTGTTCAAACCCCTTAATTTCTTGAATACCTACCTACCTGTAGTCCCAGTTCAAGTCCACCT TGTCCTGTCATTACTCTGTCACCAACATCAAGATGGCTACTCTAGCATCAATTCCAGAGGCAAGCACTTTGTTGC CCAACACGCACGACTCCCGACCGCTTCAGCGGACTGCTTCCTTTGAGAGAATTCGGCCGCGATCTCGTGTCTTGA TACTCTCCAGACGCCCAACCCGTGTCCGCAACCCGGCTCGGCGTGCGCCAGTCGCGGCGGCGCCGCGTCAAGCAA GTGGTCAGAGACATCCGCCTGCAGAGGTTTCCTGCCGAGCGAGCTCTCACTTGGAGGCGAGCGACGTGACTCCAG GTGACGCTCCAAAGGCACCGCAAAGAAGCCACAGCCGGCCGCCATACCACCGGTTCGATTCGGCCTCACCAACCG ACCAGGCGCTGGAGACTTCTGTCTCTTCCGTCGACTTGGACTCGTTCCCTCTTCCGCCCTCGCATCGCGGGCTTG CGAAAAGGTCTTCGCCGAACCCTCAGGCGGGGCCAAATCGGGATGGTGCCATTTCGCCCACCAGGGATGGGCCTT TCTCGAGTGCGCGGCGGTGCTTTGGCGAGGTTGCCGCCGATGTTGCCAGAGCCTCGAAGCACTCGTCCATAGATT CTACTCTCGTCGAAGCCATCTCAAGAACCATCGCTCAGCAGTTCCGCCTCCTCTCCGTCGCCAAGTACGCCGACC GGGAATTGATTCATCCATCAAGATCCAGCTTCTCACCTTCATTTGCCCATGCCAGCCGACCTGAAAAACCAAGAC GTCGGGATTCCCTTGATCGTTTTACCGCTGACCTCTACAAATACGCATACAACACTGGGCCCAGGGATGAAGCTG AGCAATCGTCACCCGATCCTCCCAGGTCTGGGGAGAGCCTTCACACAGTGTCTGCCCTGATGCCCTTCCGTCCAG AGTTTAGGGCGGCAGGGCTCGCCGTGACATCCAAGGATCAAGCCGAACGCAGTCCTGGCTACTTGTCGAGAGCAT ACGCGTCGCTGCGGTCACGTCAACTTCTATCCAAAGCCCCTCGAAACAGGAATCTGCACGCGTCTCAAATCGACG GGCCAGGGGAGGTCCCGAGCTCCAGCACAAACACTGAGATCTCCTTCGCTCCGAGCCAGGCGGACGAATGGAGAA GTGCCCTGATCGAAGAGGTGCCGGTGCGGAAAAAGAAGCGAGGCAAAAAGGCAAAAAGGCAAAGAAAGTCTTGTT TTCCGTGTTTTCGTGGCAAGGAAAAGCCCGCCGCCGACGGAGATTGGGCACACTTCAGAGAAGCCCCGGAGAAGC CAGCTGCAGACCGCCATGCCGCGTGGGAATCAAGGCCGACAAGGCCCAGACTGCCGCCCATCCTCCAGACGGCAG AAACTCGACCCTCGCGTTTTGACTCTGTCCCCCGAAGCCCTAAACATGTGTCGATACCACAGCCGATGATCAAAA GAAAGGATATAAACGCTCTGCCTAAGTCTGTGGCGCGGCCGCGAGGGCAGGCGACCAAGGACAAGCAACCGACGA CCCTGCCCACGAATTTGGCGCCTTTCAAGACTCAATCCGGCGCATTTCCGCGCCGAGATGGCGACAAGAGACGCA AGCCGGGTTCCAGGTCGGGGGCACTTCCGCCTCGGTCCAAGTCAGATTAGAGTGGACTGGCGCGTGGCGGGAAGA GAAGAGAGCCAGTGATTTTGTCGTCGAAGACTGATCGGCAAGCGTCTGGCCGTGAGACGGGCCGAGTTCCCTCCA AGGCGAAGGCGGGCGATATGCCGGAAGAGGATCACGGTCACGCCTTGTCGGCGTTGCCTTCGACTTGGTTCCGCC AGGATGGTCCCATCCCGGACCTGGAGGAGGAGCTCGAAAAGACGGCACGACTAGTTGCAAATACTAAACCTTCAG CCACAAGCAGACGACCGACGACGTCGACTCGGCGGCAGAAGCAGCCGACGCTCCGCTACGACCCAAACCACATGG GCATATGCTGCCGCAGCAGCAGGGGGCTCCCTTCCCGGGCCACGGCCCCGCCCAATATCCCCATGAGAACCTCAT CCGTCAAGGGCAGTGTCAGCTCCGACGCGGACGACGAGGGCATCAAAGACGGCGACGTCTTGCGCGGGTTGCACG TGGCGGCTTCGGCTGCTTGCGACCAGGAAGTGGATGCCTTCGTGCGCGACCAGACGGGGCTGCGGATCCGCCGCT TCCTGGCCGACTTGATGACGCTTGAAGCCTTTGGTCATCCGCTGCCGGGGGAGGGCAGCGAGCAGCGGGCGTGGC GGAGGAGGGCGGAGATGAGGCCGCTGAAGCGACGTGTCCGCCGTTCGCGCGAGCTGTCGGGCGTCGCTGGGGGGT TCATCTGA |