© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|4343 |
| Gene name | |
| Location | scaffold_343:13213..13810 |
| Strand | + |
| Gene length (bp) | 597 |
| Transcript length (bp) | 453 |
| Coding sequence length (bp) | 450 |
| Protein length (aa) | 150 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 20 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 5 | 27 | 22 |
| 2 | 40 | 59 | 19 |
| 3 | 71 | 93 | 22 |
| 4 | 113 | 135 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 92.24 | 42.06 | 142.41 |
| CcL | In ants, during behavior modification | 300.52 | 151.56 | 449.49 |
| CcD | In ants, recently dead | 180.06 | 94.89 | 265.22 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.000286 | yes |
| SC16a | CcD | 0.008585 | yes |
| CcL | CcD | 0.031173 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|4343 MQLHAILAAVLHAACFIAALVVCGLYGHDLRVGYTHDSKWVYAIVVGGLSAVTCLVYAVPKTLHRINVPAASWSL VLFILWIAVFGVFGSMYIKKGYGNSESDQHTRHMKVAVWFDLVSALLWLVSAISLCGYWWTRGDRRSRFTGRAYV |
| Coding | >Ophio5|4343 ATGCAGCTTCACGCCATCCTCGCCGCCGTCTTGCACGCCGCTTGCTTCATCGCTGCTCTAGTTGTCTGTGGCCTG TACGGACACGATCTGCGCGTCGGGTACACGCACGACTCGAAATGGGTCTATGCCATCGTCGTTGGCGGTCTCTCT GCCGTCACGTGCTTGGTTTATGCCGTGCCCAAGACGCTCCATCGAATCAACGTACCTGCCGCTAGCTGGAGCCTT GTGCTGTTCATCCTATGGATTGCCGTCTTTGGCGTCTTCGGCTCGATGTACATCAAAAAGGGGTATGGCAATTCT GAAAGCGACCAACATACTAGACACATGAAGGTGGCCGTGTGGTTCGACCTGGTCAGCGCGCTGCTGTGGCTCGTC TCTGCCATATCGCTGTGTGGCTACTGGTGGACGCGCGGCGATAGACGATCGCGATTTACCGGCCGAGCCTACGTT |
| Transcript | >Ophio5|4343 ATGCAGCTTCACGCCATCCTCGCCGCCGTCTTGCACGCCGCTTGCTTCATCGCTGCTCTAGTTGTCTGTGGCCTG TACGGACACGATCTGCGCGTCGGGTACACGCACGACTCGAAATGGGTCTATGCCATCGTCGTTGGCGGTCTCTCT GCCGTCACGTGCTTGGTTTATGCCGTGCCCAAGACGCTCCATCGAATCAACGTACCTGCCGCTAGCTGGAGCCTT GTGCTGTTCATCCTATGGATTGCCGTCTTTGGCGTCTTCGGCTCGATGTACATCAAAAAGGGGTATGGCAATTCT GAAAGCGACCAACATACTAGACACATGAAGGTGGCCGTGTGGTTCGACCTGGTCAGCGCGCTGCTGTGGCTCGTC TCTGCCATATCGCTGTGTGGCTACTGGTGGACGCGCGGCGATAGACGATCGCGATTTACCGGCCGAGCCTACGTT TGA |
| Gene | >Ophio5|4343 ATGCAGCTTCACGCCATCCTCGCCGCCGTCTTGCACGCCGCTTGCTTCATCGCTGCTCTAGTTGTCTGTGGCCTG TACGGACACGATCTGCGCGTCGGGTACACGCACGACTCGAAATGGGTGAGTGAGGGTGCCATATTTGGGACACGA TGATGCTCATCAATCGCCTAGGTCTATGCCATCGTCGTTGGCGGTCTCTCTGCCGTCACGTGCTTGGTTTATGCC GTGCCCAAGACGCTCCATCGAATCAACGTACCTGCCGCTAGCTGGAGCCTTGTGCTGTTCATCCTATGGATTGCC GTCTTTGGCGTCTTCGGCTCGGTGGGTCAACATCTCATATGTGTTGTGTTGTGTTGTGTGTGTGTGTGTGTGTGT TTCTCGCCGTGTCGCAAGGCTGATGTGAACGAGCGGCAGATGTACATCAAAAAGGGGTATGGCAATTCTGAAAGC GACCAACATACTAGACACATGAAGGTGGCCGTGTGGTTCGACCTGGTCAGCGCGCTGCTGTGGCTCGTCTCTGCC ATATCGCTGTGTGGCTACTGGTGGACGCGCGGCGATAGACGATCGCGATTTACCGGCCGAGCCTACGTTTGA |