Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|434
Gene name
Locationscaffold_11:79176..80429
Strand+
Gene length (bp)1253
Transcript length (bp)1164
Coding sequence length (bp)1161
Protein length (aa) 387

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04194 PDCD2_C Programmed cell death protein 2, C-terminal putative domain 7.4E-33 264 380

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|P87156|TSR4_SCHPO Probable 20S rRNA accumulation protein 4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC25H2.15 PE=3 SV=1 11 381 8.0E-31
sp|P25040|TSR4_YEAST 20S rRNA accumulation protein 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TSR4 PE=1 SV=2 2 381 3.0E-26
sp|Q8C5N5|PDD2L_MOUSE Programmed cell death protein 2-like OS=Mus musculus GN=Pdcd2l PE=1 SV=1 32 361 3.0E-17
sp|Q5ZID2|PDD2L_CHICK Programmed cell death protein 2-like OS=Gallus gallus GN=PDCD2L PE=2 SV=1 34 379 6.0E-17
sp|Q9BRP1|PDD2L_HUMAN Programmed cell death protein 2-like OS=Homo sapiens GN=PDCD2L PE=1 SV=1 32 361 2.0E-14
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Swissprot ID Swissprot Description Start End E-value
sp|P87156|TSR4_SCHPO Probable 20S rRNA accumulation protein 4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC25H2.15 PE=3 SV=1 11 381 8.0E-31
sp|P25040|TSR4_YEAST 20S rRNA accumulation protein 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TSR4 PE=1 SV=2 2 381 3.0E-26
sp|Q8C5N5|PDD2L_MOUSE Programmed cell death protein 2-like OS=Mus musculus GN=Pdcd2l PE=1 SV=1 32 361 3.0E-17
sp|Q5ZID2|PDD2L_CHICK Programmed cell death protein 2-like OS=Gallus gallus GN=PDCD2L PE=2 SV=1 34 379 6.0E-17
sp|Q9BRP1|PDD2L_HUMAN Programmed cell death protein 2-like OS=Homo sapiens GN=PDCD2L PE=1 SV=1 32 361 2.0E-14
sp|P46718|PDCD2_MOUSE Programmed cell death protein 2 OS=Mus musculus GN=Pdcd2 PE=2 SV=2 34 359 3.0E-13
sp|P47816|PDCD2_RAT Programmed cell death protein 2 OS=Rattus norvegicus GN=Pdcd2 PE=2 SV=2 34 359 2.0E-12
sp|Q16342|PDCD2_HUMAN Programmed cell death protein 2 OS=Homo sapiens GN=PDCD2 PE=1 SV=2 34 359 1.0E-10
sp|Q09787|YA99_SCHPO Uncharacterized protein C13G6.09 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC13G6.09 PE=4 SV=1 236 376 2.0E-07
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GO

GO Term Description Terminal node
GO:0005737 cytoplasm Yes
GO:0110165 cellular anatomical entity No
GO:0005575 cellular_component No

SignalP

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SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 11 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|434
MADDYDSESSSGSYTETSVLLGYASRSDELDTISKLGGQPDWLEGAQPASVTLARCGACQDIMVLLLQLNGELPE
RFPGHERRLYVFACRRKSCRRREGSVRVVRAVRAWGGAKEEEEEEEEEEEAVVEMKKDRSGLGEALFGASTTVAT
DVASSNPFAVPSISAPSTSSSLTKTFAQSLSLNNDKDEVSSSSSTSFPPSSRPRFEAWPSQLPKPYPTYSLSDAD
YEILEPTTAAKLPPQARLVDSSDELPSALDREAFESTMDATFQKFADRIAQNPDQVLRYHFAGLPLLYSDKDAVG
RLLAGLNPPGFPACRHCAGPRCFELQLTPNAIVELEAGELGFDGMEWGTIIVAVCERDCVPNSSAEGEVQYLEEW
AGVQWEELVNSK
Coding >Ophio5|434
ATGGCAGACGACTACGACTCCGAATCCAGCTCAGGGTCCTACACCGAAACAAGCGTACTCCTGGGCTACGCCTCC
CGAAGCGACGAGTTAGACACCATCAGCAAGCTCGGCGGCCAGCCGGACTGGCTGGAAGGTGCGCAGCCGGCGTCG
GTAACGCTGGCGCGATGCGGGGCTTGCCAAGATATCATGGTGCTACTGCTGCAGCTCAATGGCGAGCTTCCGGAG
AGGTTTCCTGGGCACGAGCGCAGATTGTATGTGTTCGCGTGCAGGAGGAAGTCGTGTCGTAGGAGAGAGGGTAGT
GTTCGTGTCGTTCGCGCTGTGAGGGCTTGGGGAGGGGCAAAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GCGGTCGTGGAGATGAAAAAGGACCGCTCTGGCTTGGGTGAGGCTCTCTTCGGCGCCAGCACGACTGTGGCCACC
GACGTGGCGAGTTCGAATCCCTTCGCCGTACCGTCCATCAGCGCGCCATCGACCTCGTCCTCGCTCACCAAGACA
TTCGCCCAAAGCCTCTCCCTCAACAACGACAAGGACGAAGTCTCCTCCTCCTCCTCCACCTCCTTCCCCCCCTCC
TCGCGTCCGAGATTCGAAGCCTGGCCTTCTCAGCTTCCAAAGCCCTACCCGACTTATTCCCTCTCGGACGCCGAT
TACGAAATTCTCGAGCCCACTACTGCCGCCAAGCTTCCTCCCCAAGCACGTCTCGTCGACAGCTCGGACGAGCTT
CCGTCAGCCCTCGATCGAGAAGCCTTCGAATCCACCATGGACGCCACTTTTCAGAAATTCGCCGATCGCATCGCC
CAGAATCCCGATCAGGTTCTTCGTTATCATTTTGCTGGCCTTCCGCTTCTCTACTCCGATAAGGACGCTGTTGGT
CGTCTTCTCGCTGGCCTCAACCCGCCTGGCTTTCCTGCTTGTCGTCATTGCGCTGGCCCTCGATGCTTCGAGCTG
CAGTTGACGCCTAATGCCATCGTCGAGCTTGAGGCTGGTGAGCTGGGCTTCGACGGTATGGAGTGGGGGACCATC
ATTGTCGCTGTTTGTGAGCGCGATTGCGTGCCGAATTCGTCGGCTGAGGGCGAGGTGCAGTATCTCGAGGAGTGG
GCTGGCGTTCAGTGGGAGGAACTGGTCAATTCAAAG
Transcript >Ophio5|434
ATGGCAGACGACTACGACTCCGAATCCAGCTCAGGGTCCTACACCGAAACAAGCGTACTCCTGGGCTACGCCTCC
CGAAGCGACGAGTTAGACACCATCAGCAAGCTCGGCGGCCAGCCGGACTGGCTGGAAGGTGCGCAGCCGGCGTCG
GTAACGCTGGCGCGATGCGGGGCTTGCCAAGATATCATGGTGCTACTGCTGCAGCTCAATGGCGAGCTTCCGGAG
AGGTTTCCTGGGCACGAGCGCAGATTGTATGTGTTCGCGTGCAGGAGGAAGTCGTGTCGTAGGAGAGAGGGTAGT
GTTCGTGTCGTTCGCGCTGTGAGGGCTTGGGGAGGGGCAAAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GCGGTCGTGGAGATGAAAAAGGACCGCTCTGGCTTGGGTGAGGCTCTCTTCGGCGCCAGCACGACTGTGGCCACC
GACGTGGCGAGTTCGAATCCCTTCGCCGTACCGTCCATCAGCGCGCCATCGACCTCGTCCTCGCTCACCAAGACA
TTCGCCCAAAGCCTCTCCCTCAACAACGACAAGGACGAAGTCTCCTCCTCCTCCTCCACCTCCTTCCCCCCCTCC
TCGCGTCCGAGATTCGAAGCCTGGCCTTCTCAGCTTCCAAAGCCCTACCCGACTTATTCCCTCTCGGACGCCGAT
TACGAAATTCTCGAGCCCACTACTGCCGCCAAGCTTCCTCCCCAAGCACGTCTCGTCGACAGCTCGGACGAGCTT
CCGTCAGCCCTCGATCGAGAAGCCTTCGAATCCACCATGGACGCCACTTTTCAGAAATTCGCCGATCGCATCGCC
CAGAATCCCGATCAGGTTCTTCGTTATCATTTTGCTGGCCTTCCGCTTCTCTACTCCGATAAGGACGCTGTTGGT
CGTCTTCTCGCTGGCCTCAACCCGCCTGGCTTTCCTGCTTGTCGTCATTGCGCTGGCCCTCGATGCTTCGAGCTG
CAGTTGACGCCTAATGCCATCGTCGAGCTTGAGGCTGGTGAGCTGGGCTTCGACGGTATGGAGTGGGGGACCATC
ATTGTCGCTGTTTGTGAGCGCGATTGCGTGCCGAATTCGTCGGCTGAGGGCGAGGTGCAGTATCTCGAGGAGTGG
GCTGGCGTTCAGTGGGAGGAACTGGTCAATTCAAAGTGA
Gene >Ophio5|434
ATGGCAGACGACTACGACTCCGAATCCAGCTCAGGGTCCTACACCGAAACAAGCGTACTCCTGGGCTACGCCTCC
CGAAGCGACGAGTTAGACACCATCAGCAAGCTCGGCGGCCAGCCGGTACGTTGTATCCAACCCTTTTCTTGCCAC
CTTTCTTGCCTACACACACACACAAATTATATACATATCTGACGACGAGGCCAAACCAGGACTGGCTGGAAGGTG
CGCAGCCGGCGTCGGTAACGCTGGCGCGATGCGGGGCTTGCCAAGATATCATGGTGCTACTGCTGCAGCTCAATG
GCGAGCTTCCGGAGAGGTTTCCTGGGCACGAGCGCAGATTGTATGTGTTCGCGTGCAGGAGGAAGTCGTGTCGTA
GGAGAGAGGGTAGTGTTCGTGTCGTTCGCGCTGTGAGGGCTTGGGGAGGGGCAAAAGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGCGGTCGTGGAGATGAAAAAGGACCGCTCTGGCTTGGGTGAGGCTCTCTTCGGCGCCAGCA
CGACTGTGGCCACCGACGTGGCGAGTTCGAATCCCTTCGCCGTACCGTCCATCAGCGCGCCATCGACCTCGTCCT
CGCTCACCAAGACATTCGCCCAAAGCCTCTCCCTCAACAACGACAAGGACGAAGTCTCCTCCTCCTCCTCCACCT
CCTTCCCCCCCTCCTCGCGTCCGAGATTCGAAGCCTGGCCTTCTCAGCTTCCAAAGCCCTACCCGACTTATTCCC
TCTCGGACGCCGATTACGAAATTCTCGAGCCCACTACTGCCGCCAAGCTTCCTCCCCAAGCACGTCTCGTCGACA
GCTCGGACGAGCTTCCGTCAGCCCTCGATCGAGAAGCCTTCGAATCCACCATGGACGCCACTTTTCAGAAATTCG
CCGATCGCATCGCCCAGAATCCCGATCAGGTTCTTCGTTATCATTTTGCTGGCCTTCCGCTTCTCTACTCCGATA
AGGACGCTGTTGGTCGTCTTCTCGCTGGCCTCAACCCGCCTGGCTTTCCTGCTTGTCGTCATTGCGCTGGCCCTC
GATGCTTCGAGCTGCAGTTGACGCCTAATGCCATCGTCGAGCTTGAGGCTGGTGAGCTGGGCTTCGACGGTATGG
AGTGGGGGACCATCATTGTCGCTGTTTGTGAGCGCGATTGCGTGCCGAATTCGTCGGCTGAGGGCGAGGTGCAGT
ATCTCGAGGAGTGGGCTGGCGTTCAGTGGGAGGAACTGGTCAATTCAAAGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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