Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|4299
Gene name
Locationscaffold_34:24336..25400
Strand-
Gene length (bp)1064
Transcript length (bp)1005
Coding sequence length (bp)1002
Protein length (aa) 334

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF12271 Chs7 Chitin synthase export chaperone 3.7E-123 3 286

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q4IJ79|CHS7_GIBZE Chitin synthase export chaperone OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=CHS7 PE=3 SV=2 1 333 0.0E+00
sp|Q2H7Q1|CHS7_CHAGB Chitin synthase export chaperone OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) GN=CHS7 PE=3 SV=1 3 331 0.0E+00
sp|Q7SB92|CHS7_NEUCR Chitin synthase export chaperone OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=csc-1 PE=3 SV=1 1 313 0.0E+00
sp|Q5YCW8|CHS7_FUSO4 Chitin synthase export chaperone OS=Fusarium oxysporum f. sp. lycopersici (strain 4287 / CBS 123668 / FGSC 9935 / NRRL 34936) GN=chs7 PE=3 SV=1 1 333 0.0E+00
sp|Q2UNJ0|CHS7_ASPOR Chitin synthase export chaperone OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=chs7 PE=3 SV=1 3 310 3.0E-165
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Swissprot ID Swissprot Description Start End E-value
sp|Q4IJ79|CHS7_GIBZE Chitin synthase export chaperone OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=CHS7 PE=3 SV=2 1 333 0.0E+00
sp|Q2H7Q1|CHS7_CHAGB Chitin synthase export chaperone OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) GN=CHS7 PE=3 SV=1 3 331 0.0E+00
sp|Q7SB92|CHS7_NEUCR Chitin synthase export chaperone OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=csc-1 PE=3 SV=1 1 313 0.0E+00
sp|Q5YCW8|CHS7_FUSO4 Chitin synthase export chaperone OS=Fusarium oxysporum f. sp. lycopersici (strain 4287 / CBS 123668 / FGSC 9935 / NRRL 34936) GN=chs7 PE=3 SV=1 1 333 0.0E+00
sp|Q2UNJ0|CHS7_ASPOR Chitin synthase export chaperone OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=chs7 PE=3 SV=1 3 310 3.0E-165
sp|Q6MYT0|CHS7_ASPFU Chitin synthase export chaperone OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=chs7 PE=3 SV=1 3 330 8.0E-161
sp|Q5BEG1|CHS7_EMENI Chitin synthase export chaperone OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=chs7 PE=3 SV=1 3 330 2.0E-158
sp|Q1DKX4|CHS7_COCIM Chitin synthase export chaperone OS=Coccidioides immitis (strain RS) GN=CHS7 PE=3 SV=1 4 328 7.0E-158
sp|A1CPR8|CHS7_ASPCL Chitin synthase export chaperone OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=chs7 PE=3 SV=1 3 330 1.0E-151
sp|Q0UDX8|CHS7_PHANO Chitin synthase export chaperone OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) GN=CHS7 PE=3 SV=1 3 334 2.0E-150
sp|P0CM73|CHS7_CRYNB Chitin synthase export chaperone OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=CHS7 PE=3 SV=1 4 311 2.0E-99
sp|P0CM72|CHS7_CRYNJ Chitin synthase export chaperone OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=CHS7 PE=3 SV=1 4 311 4.0E-99
sp|Q6C8U1|CHS7_YARLI Chitin synthase export chaperone OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=CHS7 PE=3 SV=1 3 302 6.0E-98
sp|Q5AA40|CHS7_CANAL Chitin synthase export chaperone OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=CHS7 PE=3 SV=1 4 308 6.0E-94
sp|Q6BUS8|CHS7_DEBHA Chitin synthase export chaperone OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=CHS7 PE=3 SV=1 3 306 4.0E-91
sp|P38843|CHS7_YEAST Chitin synthase export chaperone OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CHS7 PE=1 SV=1 3 290 5.0E-80
sp|Q6FT25|CHS7_CANGA Chitin synthase export chaperone OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=CHS7 PE=3 SV=1 3 290 1.0E-78
sp|Q6CRM6|CHS7_KLULA Chitin synthase export chaperone OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=CHS7 PE=3 SV=1 4 285 2.0E-75
sp|Q754N9|CHS7_ASHGO Chitin synthase export chaperone OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=CHS7 PE=3 SV=1 4 290 2.0E-68
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 28 0.5

Transmembrane Domains

Domain # Start End Length
1 50 72 22
2 85 107 22
3 117 139 22
4 151 173 22
5 188 210 22
6 223 245 22
7 255 273 18

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 120.90 65.67 176.13
CcL In ants, during behavior modification 108.49 57.22 159.76
CcD In ants, recently dead 106.30 58.87 153.73

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 0.686147 no
SC16a CcD 0.614696 no
CcL CcD 0.943058 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|4299
MSGFGDFKTICEKAPLPLCANVGPVLSASGRVGIEPDCYARNIELANTIIFEGAASAMHIAALVMTVVMILHVRS
KFTAVGRKEILTFFYIYMLTTFASLIVDAGVVPPGSAPYPYFVSIQNGFSSALVTCLLINGFVGFQLYEDGTPLS
VWLLRLCSLAALAIGFLVSLATFKGWAGLGPTNTVGLFVVLYLLNAIQLFIYVGMQILLVTRTLHDRWPLGDISF
GLFFFITGQVILYAFSANICTAVSHYLDGLFFATTCNLLAVMMVYKYWDSITREDLEFSVGTRMNNWEVKELLPE
DERRATMYADDQYGQSSPYDMPFSPTGQRYSVKG
Coding >Ophio5|4299
ATGTCGGGCTTCGGCGACTTCAAGACCATCTGCGAAAAGGCGCCCCTCCCCCTTTGCGCCAATGTCGGTCCCGTT
CTCTCGGCCTCGGGCCGTGTCGGCATCGAGCCCGACTGCTACGCCCGCAACATCGAGCTCGCCAACACCATCATC
TTCGAGGGCGCCGCCTCGGCCATGCACATCGCGGCCCTCGTCATGACCGTTGTCATGATCCTCCACGTCCGCTCC
AAGTTCACCGCCGTCGGCCGAAAGGAGATCCTCACCTTCTTCTACATATACATGTTGACGACGTTTGCCTCGCTC
ATCGTCGACGCCGGCGTCGTGCCACCCGGCAGCGCGCCCTATCCTTACTTTGTCAGCATCCAGAACGGCTTCAGC
AGCGCCCTCGTCACCTGTTTGCTCATCAACGGCTTCGTCGGTTTTCAGCTGTACGAGGACGGCACGCCGCTGTCG
GTTTGGCTGCTACGCCTGTGCTCGCTGGCCGCCTTGGCCATCGGCTTCCTCGTCTCGCTCGCCACCTTCAAGGGC
TGGGCTGGGCTGGGCCCTACCAACACCGTCGGCCTTTTCGTCGTTCTGTACCTGCTCAACGCCATCCAGCTCTTC
ATCTACGTCGGTATGCAGATCCTGCTGGTGACTCGCACACTGCATGACCGCTGGCCTCTCGGCGACATCTCGTTT
GGCCTGTTCTTCTTCATCACCGGCCAGGTCATTCTCTACGCCTTCAGCGCCAACATCTGCACCGCCGTCAGCCAC
TACCTCGACGGGCTCTTCTTCGCCACCACCTGTAACCTGCTGGCCGTCATGATGGTGTACAAGTACTGGGACTCA
ATCACGCGCGAAGACCTCGAGTTCTCCGTCGGCACCCGGATGAACAACTGGGAGGTTAAGGAGCTGCTGCCAGAA
GACGAACGGCGGGCGACCATGTACGCCGACGACCAGTACGGGCAGTCGAGCCCCTACGACATGCCATTCTCGCCC
ACGGGGCAACGTTACTCTGTCAAGGGC
Transcript >Ophio5|4299
ATGTCGGGCTTCGGCGACTTCAAGACCATCTGCGAAAAGGCGCCCCTCCCCCTTTGCGCCAATGTCGGTCCCGTT
CTCTCGGCCTCGGGCCGTGTCGGCATCGAGCCCGACTGCTACGCCCGCAACATCGAGCTCGCCAACACCATCATC
TTCGAGGGCGCCGCCTCGGCCATGCACATCGCGGCCCTCGTCATGACCGTTGTCATGATCCTCCACGTCCGCTCC
AAGTTCACCGCCGTCGGCCGAAAGGAGATCCTCACCTTCTTCTACATATACATGTTGACGACGTTTGCCTCGCTC
ATCGTCGACGCCGGCGTCGTGCCACCCGGCAGCGCGCCCTATCCTTACTTTGTCAGCATCCAGAACGGCTTCAGC
AGCGCCCTCGTCACCTGTTTGCTCATCAACGGCTTCGTCGGTTTTCAGCTGTACGAGGACGGCACGCCGCTGTCG
GTTTGGCTGCTACGCCTGTGCTCGCTGGCCGCCTTGGCCATCGGCTTCCTCGTCTCGCTCGCCACCTTCAAGGGC
TGGGCTGGGCTGGGCCCTACCAACACCGTCGGCCTTTTCGTCGTTCTGTACCTGCTCAACGCCATCCAGCTCTTC
ATCTACGTCGGTATGCAGATCCTGCTGGTGACTCGCACACTGCATGACCGCTGGCCTCTCGGCGACATCTCGTTT
GGCCTGTTCTTCTTCATCACCGGCCAGGTCATTCTCTACGCCTTCAGCGCCAACATCTGCACCGCCGTCAGCCAC
TACCTCGACGGGCTCTTCTTCGCCACCACCTGTAACCTGCTGGCCGTCATGATGGTGTACAAGTACTGGGACTCA
ATCACGCGCGAAGACCTCGAGTTCTCCGTCGGCACCCGGATGAACAACTGGGAGGTTAAGGAGCTGCTGCCAGAA
GACGAACGGCGGGCGACCATGTACGCCGACGACCAGTACGGGCAGTCGAGCCCCTACGACATGCCATTCTCGCCC
ACGGGGCAACGTTACTCTGTCAAGGGCTGA
Gene >Ophio5|4299
ATGTCGGGCTTCGGCGACTTCAAGACCATCTGCGAAAAGGCGCCCCTCCCCCTTTGCGCCAATGTCGGTCCCGTT
CTCTCGGCCTCGGGCCGTGTCGGCATCGAGCCCGACTGCTACGCCCGCAACATCGAGCTCGCCAACACCATCATC
TTCGAGGGCGCCGCCTCGGCCATGCACATCGCGGCCCTCGTCATGACCGTTGTCATGATCCTCCACGTCCGCTCC
AAGTTCACCGCCGTCGGCCGAAAGGAGATCCTCACCTTCTTCTACATATACATGTTGACGACGTTTGCCTCGCTC
ATCGTCGACGCCGGCGTCGTGCCACCCGGCAGCGCGCCCTATCCTTACTTTGTCAGCATCCAGAACGGCTTCAGC
AGCGCCCTCGTCACCTGTTTGCTCATCAACGGCTTCGTCGGTTTTCAGCTGTACGAGGACGGCACGCCGCTGTCG
GTTTGGCTGCTACGCCTGTGCTCGCTGGCCGCCTTGGCCATCGGCTTCCTCGTCTCGCTCGCCACCTTCAAGGGC
TGGGCTGGGCTGGGCCCTACCAACACCGTCGGCCTTTTCGTCGTTCTGTACCTGCTCAACGCCATCCAGCTCTTC
ATCTACGTCGGTATGCAGATCCTGCTGGTGACTCGCACACTGCATGACCGCTGGCCTCTCGGCGACATCTCGTTT
GGCCTGTTCTTCTTCATCACCGGCCAGGTCATTCTCTACGCCTTCAGCGCCAACATCTGCACCGCCGTCAGCCAC
TACCTCGACGGGCTCTTCTTCGCCACCACCTGTAACCTGCTGGCCGTCATGATGGTGTACAAGGTAAGTCGTGCT
TTTGTCTGTTCTGGCTTCGGTCGACGGCTGCTGACTGGTTTGCTCAGTACTGGGACTCAATCACGCGCGAAGACC
TCGAGTTCTCCGTCGGCACCCGGATGAACAACTGGGAGGTTAAGGAGCTGCTGCCAGAAGACGAACGGCGGGCGA
CCATGTACGCCGACGACCAGTACGGGCAGTCGAGCCCCTACGACATGCCATTCTCGCCCACGGGGCAACGTTACT
CTGTCAAGGGCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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