Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|4273
Gene name
Locationscaffold_337:13964..14252
Strand-
Gene length (bp)288
Transcript length (bp)216
Coding sequence length (bp)213
Protein length (aa) 71

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PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 16 0.5

Transmembrane Domains

Domain # Start End Length
1 21 38 17

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 105.32 27.96 182.68
CcL In ants, during behavior modification 79.20 16.95 141.45
CcD In ants, recently dead 122.24 35.21 209.26

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 0.479246 no
SC16a CcD 0.726991 no
CcL CcD 0.262579 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|4273
MQCKSISTRSSTTNTRPLGRIAFVFLIVFFVFLLHLWLTTENIVISFLAGAISQITLLHNNNSRSSSSSAN
Coding >Ophio5|4273
ATGCAGTGTAAAAGCATCTCAACTCGCTCGTCAACTACAAATACTCGTCCGCTAGGCCGGATAGCTTTTGTCTTT
CTCATTGTCTTCTTTGTATTCTTGCTTCATCTCTGGCTGACGACCGAGAACATCGTAATTTCTTTCTTGGCTGGC
GCTATTTCTCAGATCACTTTGCTACACAACAACAACAGCCGCAGCAGCAGCAGCAGCGCAAAC
Transcript >Ophio5|4273
ATGCAGTGTAAAAGCATCTCAACTCGCTCGTCAACTACAAATACTCGTCCGCTAGGCCGGATAGCTTTTGTCTTT
CTCATTGTCTTCTTTGTATTCTTGCTTCATCTCTGGCTGACGACCGAGAACATCGTAATTTCTTTCTTGGCTGGC
GCTATTTCTCAGATCACTTTGCTACACAACAACAACAGCCGCAGCAGCAGCAGCAGCGCAAACTAA
Gene >Ophio5|4273
ATGCAGTGTAAAAGCATCTCAACTCGCTCGTCAACTACAAATACTCGTCCGCTAGGCCGGATAGCTTTTGTCTTT
CTCATTGTCTTCTTTGTATTCTTGCTTCATCTCTGGCTGACGACCGAGAACATCGTAATTTCTTTCTTGGCTGGC
GCTATTTCTCAGATCACTTTGCTGTGAGAGGCCTTCCCCGGATGCGCTGCACTGGACGACGTTGACGATGCTAAC
GACCGCAAATGGCAAGACAGACACAACAACAACAGCCGCAGCAGCAGCAGCAGCGCAAACTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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