Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophio5\|4266
Gene name
Location	scaffold_337:379..1630
Strand	-
Gene length (bp)	1251
Transcript length (bp)	1251
Coding sequence length (bp)	1248
Protein length (aa)	416

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF07039	DUF1325	SGF29 tudor-like domain	1.6E-34	286	414

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q9USW9\|SGF29_SCHPO	SAGA-associated factor 29 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sgf29 PE=1 SV=2	210	414	3.0E-17
sp\|P25554\|SGF29_YEAST	SAGA-associated factor 29 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SGF29 PE=1 SV=2	260	412	9.0E-12

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 11	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
SC16a	Pure fungal culture	66.38	36.54	96.22
CcL	In ants, during behavior modification	65.32	32.56	98.07
CcD	In ants, recently dead	82.21	44.84	119.57

Differential expression

Label1	Label2	Q-value	Significant difference
SC16a	CcL	0.954419	no
SC16a	CcD	0.376880	no
CcL	CcD	0.367853	no

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophio5\|4266 MANRKGWLSKELRRLQEQLGPYHHQTPSRRRGTTASSSDNKSSDIAKESISVQVRQIGKSSGTDTDNRNAMSQRN RSGRGSNRNNGNNSHGEEAQIWEACKAQMAEIVTGVNAENESLSELVKLDKDVGSMDPDRVPTDAIKQMEQLCRK GVKFSEANISSIKAVTEQLKILRAVVVAKEQAEAASASGPGKRAARDSAAAATAATASLYDFDGGGDSPVPSPMA GGGGGAGSSASARKHGDRSSNRDSMPPKADSVEPQGPAASGSGGGSSSNNNNNRSRVTFSKGDAVAFKPKAPSGE PSSDWILGEVAAVMGEGKSRRYKVLDIEPDDQSKQKEYRSSASSMIAITPESQADTLRNWEAGKVVLALYPNTTT FYKAEVHSMDGDLRVNLKFEGENDSTTLQQVERRFVIEYRA
Coding	>Ophio5\|4266 ATGGCTAATCGAAAGGGTTGGCTTTCCAAAGAGCTCAGAAGGCTACAGGAGCAGCTCGGTCCTTATCATCATCAA ACCCCGTCACGCAGACGAGGCACGACAGCCAGCAGCAGCGACAACAAGAGCAGCGATATCGCCAAAGAAAGCATC TCAGTTCAAGTCAGACAAATAGGCAAAAGCTCCGGTACAGACACCGACAATCGCAACGCCATGTCTCAACGCAAC CGCAGTGGTCGTGGGTCCAACCGTAACAACGGTAACAACTCGCACGGTGAGGAGGCGCAGATCTGGGAGGCGTGC AAAGCGCAGATGGCGGAAATCGTTACGGGCGTCAACGCCGAGAACGAAAGCCTCTCGGAGCTCGTCAAACTGGAC AAGGACGTGGGCTCGATGGACCCGGACAGGGTGCCGACGGACGCCATCAAGCAGATGGAGCAGCTGTGCCGAAAA GGGGTGAAGTTCTCCGAGGCCAACATCTCGAGCATCAAGGCGGTGACGGAACAGCTCAAGATCCTACGGGCCGTG GTGGTGGCCAAAGAGCAGGCCGAGGCGGCGTCGGCGTCGGGCCCGGGTAAGAGAGCGGCCCGAGACAGCGCGGCG GCGGCGACGGCGGCGACGGCGTCACTCTACGACTTTGACGGCGGCGGCGACTCTCCGGTACCGAGCCCGATGGCC GGCGGAGGGGGCGGCGCCGGCTCCTCGGCGTCGGCACGCAAGCACGGCGACCGATCGAGCAACCGCGACAGCATG CCGCCCAAGGCCGACAGCGTCGAGCCGCAGGGCCCCGCGGCGTCGGGCAGCGGCGGCGGAAGCAGCAGCAACAAC AACAACAACCGATCCCGCGTCACCTTTTCCAAGGGCGACGCCGTAGCCTTTAAGCCTAAGGCGCCGAGCGGCGAG CCGTCGTCGGATTGGATCCTGGGCGAGGTGGCGGCAGTCATGGGCGAGGGTAAGAGCCGACGCTACAAGGTGCTC GACATCGAGCCGGACGACCAGAGCAAGCAAAAGGAGTACCGGTCCAGCGCCAGCAGCATGATTGCCATTACGCCT GAGAGCCAGGCGGACACGCTGCGTAACTGGGAGGCCGGGAAAGTGGTGCTGGCATTGTACCCCAACACGACGACG TTTTACAAGGCCGAGGTGCACAGCATGGATGGCGACTTGCGGGTCAATCTCAAGTTTGAGGGGGAGAACGACTCG ACGACGTTGCAGCAGGTGGAGAGGCGGTTTGTGATTGAGTATCGGGCT
Transcript	>Ophio5\|4266 ATGGCTAATCGAAAGGGTTGGCTTTCCAAAGAGCTCAGAAGGCTACAGGAGCAGCTCGGTCCTTATCATCATCAA ACCCCGTCACGCAGACGAGGCACGACAGCCAGCAGCAGCGACAACAAGAGCAGCGATATCGCCAAAGAAAGCATC TCAGTTCAAGTCAGACAAATAGGCAAAAGCTCCGGTACAGACACCGACAATCGCAACGCCATGTCTCAACGCAAC CGCAGTGGTCGTGGGTCCAACCGTAACAACGGTAACAACTCGCACGGTGAGGAGGCGCAGATCTGGGAGGCGTGC AAAGCGCAGATGGCGGAAATCGTTACGGGCGTCAACGCCGAGAACGAAAGCCTCTCGGAGCTCGTCAAACTGGAC AAGGACGTGGGCTCGATGGACCCGGACAGGGTGCCGACGGACGCCATCAAGCAGATGGAGCAGCTGTGCCGAAAA GGGGTGAAGTTCTCCGAGGCCAACATCTCGAGCATCAAGGCGGTGACGGAACAGCTCAAGATCCTACGGGCCGTG GTGGTGGCCAAAGAGCAGGCCGAGGCGGCGTCGGCGTCGGGCCCGGGTAAGAGAGCGGCCCGAGACAGCGCGGCG GCGGCGACGGCGGCGACGGCGTCACTCTACGACTTTGACGGCGGCGGCGACTCTCCGGTACCGAGCCCGATGGCC GGCGGAGGGGGCGGCGCCGGCTCCTCGGCGTCGGCACGCAAGCACGGCGACCGATCGAGCAACCGCGACAGCATG CCGCCCAAGGCCGACAGCGTCGAGCCGCAGGGCCCCGCGGCGTCGGGCAGCGGCGGCGGAAGCAGCAGCAACAAC AACAACAACCGATCCCGCGTCACCTTTTCCAAGGGCGACGCCGTAGCCTTTAAGCCTAAGGCGCCGAGCGGCGAG CCGTCGTCGGATTGGATCCTGGGCGAGGTGGCGGCAGTCATGGGCGAGGGTAAGAGCCGACGCTACAAGGTGCTC GACATCGAGCCGGACGACCAGAGCAAGCAAAAGGAGTACCGGTCCAGCGCCAGCAGCATGATTGCCATTACGCCT GAGAGCCAGGCGGACACGCTGCGTAACTGGGAGGCCGGGAAAGTGGTGCTGGCATTGTACCCCAACACGACGACG TTTTACAAGGCCGAGGTGCACAGCATGGATGGCGACTTGCGGGTCAATCTCAAGTTTGAGGGGGAGAACGACTCG ACGACGTTGCAGCAGGTGGAGAGGCGGTTTGTGATTGAGTATCGGGCTTGA
Gene	>Ophio5\|4266 ATGGCTAATCGAAAGGGTTGGCTTTCCAAAGAGCTCAGAAGGCTACAGGAGCAGCTCGGTCCTTATCATCATCAA ACCCCGTCACGCAGACGAGGCACGACAGCCAGCAGCAGCGACAACAAGAGCAGCGATATCGCCAAAGAAAGCATC TCAGTTCAAGTCAGACAAATAGGCAAAAGCTCCGGTACAGACACCGACAATCGCAACGCCATGTCTCAACGCAAC CGCAGTGGTCGTGGGTCCAACCGTAACAACGGTAACAACTCGCACGGTGAGGAGGCGCAGATCTGGGAGGCGTGC AAAGCGCAGATGGCGGAAATCGTTACGGGCGTCAACGCCGAGAACGAAAGCCTCTCGGAGCTCGTCAAACTGGAC AAGGACGTGGGCTCGATGGACCCGGACAGGGTGCCGACGGACGCCATCAAGCAGATGGAGCAGCTGTGCCGAAAA GGGGTGAAGTTCTCCGAGGCCAACATCTCGAGCATCAAGGCGGTGACGGAACAGCTCAAGATCCTACGGGCCGTG GTGGTGGCCAAAGAGCAGGCCGAGGCGGCGTCGGCGTCGGGCCCGGGTAAGAGAGCGGCCCGAGACAGCGCGGCG GCGGCGACGGCGGCGACGGCGTCACTCTACGACTTTGACGGCGGCGGCGACTCTCCGGTACCGAGCCCGATGGCC GGCGGAGGGGGCGGCGCCGGCTCCTCGGCGTCGGCACGCAAGCACGGCGACCGATCGAGCAACCGCGACAGCATG CCGCCCAAGGCCGACAGCGTCGAGCCGCAGGGCCCCGCGGCGTCGGGCAGCGGCGGCGGAAGCAGCAGCAACAAC AACAACAACCGATCCCGCGTCACCTTTTCCAAGGGCGACGCCGTAGCCTTTAAGCCTAAGGCGCCGAGCGGCGAG CCGTCGTCGGATTGGATCCTGGGCGAGGTGGCGGCAGTCATGGGCGAGGGTAAGAGCCGACGCTACAAGGTGCTC GACATCGAGCCGGACGACCAGAGCAAGCAAAAGGAGTACCGGTCCAGCGCCAGCAGCATGATTGCCATTACGCCT GAGAGCCAGGCGGACACGCTGCGTAACTGGGAGGCCGGGAAAGTGGTGCTGGCATTGTACCCCAACACGACGACG TTTTACAAGGCCGAGGTGCACAGCATGGATGGCGACTTGCGGGTCAATCTCAAGTTTGAGGGGGAGAACGACTCG ACGACGTTGCAGCAGGTGGAGAGGCGGTTTGTGATTGAGTATCGGGCTTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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