Protein ID | Ophio5|4266 |
Gene name | |
Location | scaffold_337:379..1630 |
Strand | - |
Gene length (bp) | 1251 |
Transcript length (bp) | 1251 |
Coding sequence length (bp) | 1248 |
Protein length (aa) | 416 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF07039 | DUF1325 | SGF29 tudor-like domain | 1.6E-34 | 286 | 414 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|Q9USW9|SGF29_SCHPO | SAGA-associated factor 29 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sgf29 PE=1 SV=2 | 210 | 414 | 3.0E-17 |
sp|P25554|SGF29_YEAST | SAGA-associated factor 29 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SGF29 PE=1 SV=2 | 260 | 412 | 9.0E-12 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Cytoplasm|Nucleus | Nuclear localization signal | 0.5396 | 0.7674 | 0.1555 | 0.0652 | 0.0867 | 0.0127 | 0.0275 | 0.0391 | 0.051 | 0.0078 |
Orthofinder run ID | 4 |
Orthogroup | 5646 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ophio5|4266 MANRKGWLSKELRRLQEQLGPYHHQTPSRRRGTTASSSDNKSSDIAKESISVQVRQIGKSSGTDTDNRNAMSQRN RSGRGSNRNNGNNSHGEEAQIWEACKAQMAEIVTGVNAENESLSELVKLDKDVGSMDPDRVPTDAIKQMEQLCRK GVKFSEANISSIKAVTEQLKILRAVVVAKEQAEAASASGPGKRAARDSAAAATAATASLYDFDGGGDSPVPSPMA GGGGGAGSSASARKHGDRSSNRDSMPPKADSVEPQGPAASGSGGGSSSNNNNNRSRVTFSKGDAVAFKPKAPSGE PSSDWILGEVAAVMGEGKSRRYKVLDIEPDDQSKQKEYRSSASSMIAITPESQADTLRNWEAGKVVLALYPNTTT FYKAEVHSMDGDLRVNLKFEGENDSTTLQQVERRFVIEYRA |
Coding | >Ophio5|4266 ATGGCTAATCGAAAGGGTTGGCTTTCCAAAGAGCTCAGAAGGCTACAGGAGCAGCTCGGTCCTTATCATCATCAA ACCCCGTCACGCAGACGAGGCACGACAGCCAGCAGCAGCGACAACAAGAGCAGCGATATCGCCAAAGAAAGCATC TCAGTTCAAGTCAGACAAATAGGCAAAAGCTCCGGTACAGACACCGACAATCGCAACGCCATGTCTCAACGCAAC CGCAGTGGTCGTGGGTCCAACCGTAACAACGGTAACAACTCGCACGGTGAGGAGGCGCAGATCTGGGAGGCGTGC AAAGCGCAGATGGCGGAAATCGTTACGGGCGTCAACGCCGAGAACGAAAGCCTCTCGGAGCTCGTCAAACTGGAC AAGGACGTGGGCTCGATGGACCCGGACAGGGTGCCGACGGACGCCATCAAGCAGATGGAGCAGCTGTGCCGAAAA GGGGTGAAGTTCTCCGAGGCCAACATCTCGAGCATCAAGGCGGTGACGGAACAGCTCAAGATCCTACGGGCCGTG GTGGTGGCCAAAGAGCAGGCCGAGGCGGCGTCGGCGTCGGGCCCGGGTAAGAGAGCGGCCCGAGACAGCGCGGCG GCGGCGACGGCGGCGACGGCGTCACTCTACGACTTTGACGGCGGCGGCGACTCTCCGGTACCGAGCCCGATGGCC GGCGGAGGGGGCGGCGCCGGCTCCTCGGCGTCGGCACGCAAGCACGGCGACCGATCGAGCAACCGCGACAGCATG CCGCCCAAGGCCGACAGCGTCGAGCCGCAGGGCCCCGCGGCGTCGGGCAGCGGCGGCGGAAGCAGCAGCAACAAC AACAACAACCGATCCCGCGTCACCTTTTCCAAGGGCGACGCCGTAGCCTTTAAGCCTAAGGCGCCGAGCGGCGAG CCGTCGTCGGATTGGATCCTGGGCGAGGTGGCGGCAGTCATGGGCGAGGGTAAGAGCCGACGCTACAAGGTGCTC GACATCGAGCCGGACGACCAGAGCAAGCAAAAGGAGTACCGGTCCAGCGCCAGCAGCATGATTGCCATTACGCCT GAGAGCCAGGCGGACACGCTGCGTAACTGGGAGGCCGGGAAAGTGGTGCTGGCATTGTACCCCAACACGACGACG TTTTACAAGGCCGAGGTGCACAGCATGGATGGCGACTTGCGGGTCAATCTCAAGTTTGAGGGGGAGAACGACTCG ACGACGTTGCAGCAGGTGGAGAGGCGGTTTGTGATTGAGTATCGGGCT |
Transcript | >Ophio5|4266 ATGGCTAATCGAAAGGGTTGGCTTTCCAAAGAGCTCAGAAGGCTACAGGAGCAGCTCGGTCCTTATCATCATCAA ACCCCGTCACGCAGACGAGGCACGACAGCCAGCAGCAGCGACAACAAGAGCAGCGATATCGCCAAAGAAAGCATC TCAGTTCAAGTCAGACAAATAGGCAAAAGCTCCGGTACAGACACCGACAATCGCAACGCCATGTCTCAACGCAAC CGCAGTGGTCGTGGGTCCAACCGTAACAACGGTAACAACTCGCACGGTGAGGAGGCGCAGATCTGGGAGGCGTGC AAAGCGCAGATGGCGGAAATCGTTACGGGCGTCAACGCCGAGAACGAAAGCCTCTCGGAGCTCGTCAAACTGGAC AAGGACGTGGGCTCGATGGACCCGGACAGGGTGCCGACGGACGCCATCAAGCAGATGGAGCAGCTGTGCCGAAAA GGGGTGAAGTTCTCCGAGGCCAACATCTCGAGCATCAAGGCGGTGACGGAACAGCTCAAGATCCTACGGGCCGTG GTGGTGGCCAAAGAGCAGGCCGAGGCGGCGTCGGCGTCGGGCCCGGGTAAGAGAGCGGCCCGAGACAGCGCGGCG GCGGCGACGGCGGCGACGGCGTCACTCTACGACTTTGACGGCGGCGGCGACTCTCCGGTACCGAGCCCGATGGCC GGCGGAGGGGGCGGCGCCGGCTCCTCGGCGTCGGCACGCAAGCACGGCGACCGATCGAGCAACCGCGACAGCATG CCGCCCAAGGCCGACAGCGTCGAGCCGCAGGGCCCCGCGGCGTCGGGCAGCGGCGGCGGAAGCAGCAGCAACAAC AACAACAACCGATCCCGCGTCACCTTTTCCAAGGGCGACGCCGTAGCCTTTAAGCCTAAGGCGCCGAGCGGCGAG CCGTCGTCGGATTGGATCCTGGGCGAGGTGGCGGCAGTCATGGGCGAGGGTAAGAGCCGACGCTACAAGGTGCTC GACATCGAGCCGGACGACCAGAGCAAGCAAAAGGAGTACCGGTCCAGCGCCAGCAGCATGATTGCCATTACGCCT GAGAGCCAGGCGGACACGCTGCGTAACTGGGAGGCCGGGAAAGTGGTGCTGGCATTGTACCCCAACACGACGACG TTTTACAAGGCCGAGGTGCACAGCATGGATGGCGACTTGCGGGTCAATCTCAAGTTTGAGGGGGAGAACGACTCG ACGACGTTGCAGCAGGTGGAGAGGCGGTTTGTGATTGAGTATCGGGCTTGA |
Gene | >Ophio5|4266 ATGGCTAATCGAAAGGGTTGGCTTTCCAAAGAGCTCAGAAGGCTACAGGAGCAGCTCGGTCCTTATCATCATCAA ACCCCGTCACGCAGACGAGGCACGACAGCCAGCAGCAGCGACAACAAGAGCAGCGATATCGCCAAAGAAAGCATC TCAGTTCAAGTCAGACAAATAGGCAAAAGCTCCGGTACAGACACCGACAATCGCAACGCCATGTCTCAACGCAAC CGCAGTGGTCGTGGGTCCAACCGTAACAACGGTAACAACTCGCACGGTGAGGAGGCGCAGATCTGGGAGGCGTGC AAAGCGCAGATGGCGGAAATCGTTACGGGCGTCAACGCCGAGAACGAAAGCCTCTCGGAGCTCGTCAAACTGGAC AAGGACGTGGGCTCGATGGACCCGGACAGGGTGCCGACGGACGCCATCAAGCAGATGGAGCAGCTGTGCCGAAAA GGGGTGAAGTTCTCCGAGGCCAACATCTCGAGCATCAAGGCGGTGACGGAACAGCTCAAGATCCTACGGGCCGTG GTGGTGGCCAAAGAGCAGGCCGAGGCGGCGTCGGCGTCGGGCCCGGGTAAGAGAGCGGCCCGAGACAGCGCGGCG GCGGCGACGGCGGCGACGGCGTCACTCTACGACTTTGACGGCGGCGGCGACTCTCCGGTACCGAGCCCGATGGCC GGCGGAGGGGGCGGCGCCGGCTCCTCGGCGTCGGCACGCAAGCACGGCGACCGATCGAGCAACCGCGACAGCATG CCGCCCAAGGCCGACAGCGTCGAGCCGCAGGGCCCCGCGGCGTCGGGCAGCGGCGGCGGAAGCAGCAGCAACAAC AACAACAACCGATCCCGCGTCACCTTTTCCAAGGGCGACGCCGTAGCCTTTAAGCCTAAGGCGCCGAGCGGCGAG CCGTCGTCGGATTGGATCCTGGGCGAGGTGGCGGCAGTCATGGGCGAGGGTAAGAGCCGACGCTACAAGGTGCTC GACATCGAGCCGGACGACCAGAGCAAGCAAAAGGAGTACCGGTCCAGCGCCAGCAGCATGATTGCCATTACGCCT GAGAGCCAGGCGGACACGCTGCGTAACTGGGAGGCCGGGAAAGTGGTGCTGGCATTGTACCCCAACACGACGACG TTTTACAAGGCCGAGGTGCACAGCATGGATGGCGACTTGCGGGTCAATCTCAAGTTTGAGGGGGAGAACGACTCG ACGACGTTGCAGCAGGTGGAGAGGCGGTTTGTGATTGAGTATCGGGCTTGA |