© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|4265 |
| Gene name | |
| Location | scaffold_336:21209..21944 |
| Strand | - |
| Gene length (bp) | 735 |
| Transcript length (bp) | 591 |
| Coding sequence length (bp) | 588 |
| Protein length (aa) | 196 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q09730|SFT1_SCHPO | Protein transport protein sft1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sft1 PE=3 SV=1 | 109 | 196 | 4.0E-10 |
| sp|P43682|SFT1_YEAST | Protein transport protein SFT1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SFT1 PE=1 SV=1 | 105 | 195 | 3.0E-09 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 26 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 5 | 27 | 22 |
| 2 | 88 | 105 | 17 |
| 3 | 173 | 192 | 19 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 164.76 | 90.12 | 239.39 |
| CcL | In ants, during behavior modification | 167.94 | 87.54 | 248.34 |
| CcD | In ants, recently dead | 207.82 | 113.27 | 302.37 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.948638 | no |
| SC16a | CcD | 0.334686 | no |
| CcL | CcD | 0.392993 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|4265 MSSSSFFFFATYLSISHWPIAASLSLPPPHTHAPPLTRIGPRIASLAHLFCSLSLSLSLAHAAHGAADDVPSLSK RIDGDDDDDDVDVIIIFFFFFFFIMAEAYERERQNNARLDELSAKVSALRGVTIDIYDNARAQDVIDNTSDTFSS MATQIKGSASRLTRMAAAGNKVAVLKLSAIIIALFLVLYYSLKLFL |
| Coding | >Ophio5|4265 ATGTCATCATCATCTTTTTTTTTTTTTGCCACATACCTCAGTATTTCGCACTGGCCTATTGCAGCATCCCTTTCT CTTCCCCCCCCACACACACACGCTCCTCCCCTAACTCGTATCGGACCACGAATCGCCTCGCTCGCTCACCTCTTC TGCTCTCTCTCTCTCTCTCTCTCTCTCGCGCATGCCGCCCACGGCGCGGCCGACGACGTACCGAGTCTATCGAAA CGAATCGACGGCGACGACGACGACGACGACGTCGACGTCATCATCATCTTCTTCTTCTTCTTCTTCTTCATCATG GCTGAAGCTTACGAGCGCGAGAGGCAAAATAATGCCCGTCTTGATGAGTTGTCTGCCAAGGTCTCTGCCCTGCGC GGCGTCACCATCGACATCTACGACAATGCTCGTGCCCAAGACGTCATCGACAATACCTCCGACACCTTCTCCTCC ATGGCCACCCAGATCAAGGGTTCGGCTTCCCGCCTCACCCGCATGGCTGCCGCCGGGAACAAGGTTGCCGTCTTG AAGCTGTCTGCCATCATCATCGCCCTGTTCCTCGTCCTCTACTACAGCCTCAAACTATTCTTG |
| Transcript | >Ophio5|4265 ATGTCATCATCATCTTTTTTTTTTTTTGCCACATACCTCAGTATTTCGCACTGGCCTATTGCAGCATCCCTTTCT CTTCCCCCCCCACACACACACGCTCCTCCCCTAACTCGTATCGGACCACGAATCGCCTCGCTCGCTCACCTCTTC TGCTCTCTCTCTCTCTCTCTCTCTCTCGCGCATGCCGCCCACGGCGCGGCCGACGACGTACCGAGTCTATCGAAA CGAATCGACGGCGACGACGACGACGACGACGTCGACGTCATCATCATCTTCTTCTTCTTCTTCTTCTTCATCATG GCTGAAGCTTACGAGCGCGAGAGGCAAAATAATGCCCGTCTTGATGAGTTGTCTGCCAAGGTCTCTGCCCTGCGC GGCGTCACCATCGACATCTACGACAATGCTCGTGCCCAAGACGTCATCGACAATACCTCCGACACCTTCTCCTCC ATGGCCACCCAGATCAAGGGTTCGGCTTCCCGCCTCACCCGCATGGCTGCCGCCGGGAACAAGGTTGCCGTCTTG AAGCTGTCTGCCATCATCATCGCCCTGTTCCTCGTCCTCTACTACAGCCTCAAACTATTCTTGTAG |
| Gene | >Ophio5|4265 ATGTCATCATCATCTTTTTTTTTTTTTGCCACATACCTCAGTATTTCGCACTGGCCTATTGCAGCATCCCTTTCT CTTCCCCCCCCACACACACACGCTCCTCCCCTAACTCGTATCGGACCACGAATCGCCTCGCTCGCTCACCTCTTC TGCTCTCTCTCTCTCTCTCTCTCTCTCGCGCATGCCGCCCACGGCGCGGCCGACGACGTACCGAGTCTATCGAAA CGAATCGACGGCGACGACGACGACGACGACGTCGACGTCATCATCATCTTCTTCTTCTTCTTCTTCTTCATCATG GCTGAAGCTTACGAGCGCGAGAGGCAAAATAATGCCCGTCTTGATGAGTTGTCTGCCAAGGTCTCTGCCCTGCGC GGCGTCACCATCGACATCTACGACAATGCTCGTGCCCAAGACGTCATCGACAATACCGTTCGTTCCTCCTTTTCC ATCTTTCCATCTTTCTTTCTTTCTTTCATCTTCATCTTCTTCTTCCTCTTCGCAACTCTCCTCCCCTTTCTTCCT CGTGGCCCCCTTCATGACCATGCTGACACGCTCGCTCTAAAAAAAAAAAAGTCCGACACCTTCTCCTCCATGGCC ACCCAGATCAAGGGTTCGGCTTCCCGCCTCACCCGCATGGCTGCCGCCGGGAACAAGGTTGCCGTCTTGAAGCTG TCTGCCATCATCATCGCCCTGTTCCTCGTCCTCTACTACAGCCTCAAACTATTCTTGTAG |