Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|4245
Gene name
Locationscaffold_334:14129..15307
Strand+
Gene length (bp)1178
Transcript length (bp)822
Coding sequence length (bp)819
Protein length (aa) 273

Your browser does not support drawing a protein figure.

PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00149 Metallophos Calcineurin-like phosphoesterase 6.7E-08 111 259

Swissprot hits

[Show all]
Swissprot ID Swissprot Description Start End E-value
sp|Q54C16|SGMB_DICDI Sphingomyelin phosphodiesterase B OS=Dictyostelium discoideum GN=sgmB PE=3 SV=1 35 264 1.0E-21
sp|Q04519|ASM_MOUSE Sphingomyelin phosphodiesterase OS=Mus musculus GN=Smpd1 PE=2 SV=2 111 263 9.0E-19
sp|Q55C09|SGMA_DICDI Sphingomyelin phosphodiesterase A OS=Dictyostelium discoideum GN=sgmA PE=3 SV=1 112 269 3.0E-18
sp|Q9UAY4|ASM3_CAEEL Putative sphingomyelin phosphodiesterase asm-3 OS=Caenorhabditis elegans GN=asm-3 PE=3 SV=2 106 268 3.0E-17
sp|Q0VD19|ASM_BOVIN Sphingomyelin phosphodiesterase OS=Bos taurus GN=SMPD1 PE=2 SV=1 111 263 7.0E-16
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|Q54C16|SGMB_DICDI Sphingomyelin phosphodiesterase B OS=Dictyostelium discoideum GN=sgmB PE=3 SV=1 35 264 1.0E-21
sp|Q04519|ASM_MOUSE Sphingomyelin phosphodiesterase OS=Mus musculus GN=Smpd1 PE=2 SV=2 111 263 9.0E-19
sp|Q55C09|SGMA_DICDI Sphingomyelin phosphodiesterase A OS=Dictyostelium discoideum GN=sgmA PE=3 SV=1 112 269 3.0E-18
sp|Q9UAY4|ASM3_CAEEL Putative sphingomyelin phosphodiesterase asm-3 OS=Caenorhabditis elegans GN=asm-3 PE=3 SV=2 106 268 3.0E-17
sp|Q0VD19|ASM_BOVIN Sphingomyelin phosphodiesterase OS=Bos taurus GN=SMPD1 PE=2 SV=1 111 263 7.0E-16
sp|P17405|ASM_HUMAN Sphingomyelin phosphodiesterase OS=Homo sapiens GN=SMPD1 PE=1 SV=4 111 263 1.0E-15
sp|Q641Z7|ASM3A_RAT Acid sphingomyelinase-like phosphodiesterase 3a OS=Rattus norvegicus GN=Smpdl3a PE=2 SV=1 96 265 8.0E-14
sp|Q10916|ASM1_CAEEL Sphingomyelin phosphodiesterase 1 OS=Caenorhabditis elegans GN=asm-1 PE=1 SV=2 12 264 1.0E-13
sp|Q92484|ASM3A_HUMAN Acid sphingomyelinase-like phosphodiesterase 3a OS=Homo sapiens GN=SMPDL3A PE=1 SV=2 111 265 2.0E-13
sp|P70158|ASM3A_MOUSE Acid sphingomyelinase-like phosphodiesterase 3a OS=Mus musculus GN=Smpdl3a PE=1 SV=2 96 269 4.0E-13
sp|Q23498|ASM2_CAEEL Sphingomyelin phosphodiesterase 2 OS=Caenorhabditis elegans GN=asm-2 PE=1 SV=3 106 268 9.0E-12
sp|Q3ZC91|ASM3A_BOVIN Acid sphingomyelinase-like phosphodiesterase 3a OS=Bos taurus GN=SMPDL3A PE=2 SV=1 95 263 1.0E-10
sp|Q92485|ASM3B_HUMAN Acid sphingomyelinase-like phosphodiesterase 3b OS=Homo sapiens GN=SMPDL3B PE=2 SV=2 102 259 6.0E-09
sp|P58242|ASM3B_MOUSE Acid sphingomyelinase-like phosphodiesterase 3b OS=Mus musculus GN=Smpdl3b PE=1 SV=1 114 259 3.0E-08
[Show less]

GO

GO Term Description Terminal node
GO:0016787 hydrolase activity Yes
GO:0003824 catalytic activity No
GO:0003674 molecular_function No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
Yes 1 - 17 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|4245
MRALIVLPLLVPRVVAFTCGLCTDKLFPKPRSSKCSYAEDADVCRDAVPQQAPIFAKVLRNNGEGSPAFKALSAF
MLGVCSVPSITPRIPSLSPKPARGRPSWSSGKAPIQVVHFSDIHIDPLYLPGANTDCGKPICCSDKPGNNDSPAG
LFGDHDCDVPHTLEKSMYDAIRTVAPNAAFAIFTGDIVDHAVWDTSARHNKKSIRNAYDVMRSQLGNLTVFAIAG
NHEAHPVNAFPTRDVREKTPSLHRQLSAEWSRWIDVDAKSDTQECFEI
Coding >Ophio5|4245
ATGCGTGCTCTTATTGTGCTTCCACTCCTTGTGCCTCGCGTGGTGGCCTTCACGTGTGGGCTTTGCACGGACAAG
CTTTTTCCGAAGCCAAGGAGCTCAAAATGCAGTTACGCGGAGGACGCTGATGTCTGCAGAGACGCTGTTCCACAG
CAGGCCCCAATTTTCGCCAAAGTTCTACGAAACAACGGTGAAGGCTCCCCGGCCTTTAAAGCCTTGAGCGCATTC
ATGCTAGGCGTCTGCAGTGTCCCCAGCATCACACCCCGGATTCCGTCCTTGTCGCCTAAACCGGCCCGCGGCAGG
CCGAGTTGGTCCAGTGGTAAAGCGCCGATCCAAGTCGTCCACTTCTCCGATATTCACATTGACCCTTTATATCTG
CCTGGCGCCAATACTGACTGCGGCAAGCCCATCTGCTGCAGTGACAAGCCCGGTAACAACGACTCGCCTGCCGGA
CTGTTTGGAGACCACGACTGCGATGTGCCGCATACGCTAGAGAAGAGCATGTATGATGCTATCCGAACCGTGGCA
CCCAACGCTGCGTTTGCTATCTTTACGGGTGACATCGTCGACCACGCCGTATGGGACACATCGGCGCGTCACAAC
AAGAAAAGCATTCGCAATGCCTACGACGTCATGAGGTCGCAACTCGGCAATCTGACAGTCTTCGCTATCGCCGGC
AATCACGAAGCACATCCGGTGAACGCTTTTCCGACACGCGACGTTCGCGAAAAAACTCCGTCACTCCATCGTCAG
CTATCGGCCGAGTGGTCTAGATGGATCGATGTGGATGCTAAGTCTGATACGCAAGAGTGTTTCGAAATC
Transcript >Ophio5|4245
ATGCGTGCTCTTATTGTGCTTCCACTCCTTGTGCCTCGCGTGGTGGCCTTCACGTGTGGGCTTTGCACGGACAAG
CTTTTTCCGAAGCCAAGGAGCTCAAAATGCAGTTACGCGGAGGACGCTGATGTCTGCAGAGACGCTGTTCCACAG
CAGGCCCCAATTTTCGCCAAAGTTCTACGAAACAACGGTGAAGGCTCCCCGGCCTTTAAAGCCTTGAGCGCATTC
ATGCTAGGCGTCTGCAGTGTCCCCAGCATCACACCCCGGATTCCGTCCTTGTCGCCTAAACCGGCCCGCGGCAGG
CCGAGTTGGTCCAGTGGTAAAGCGCCGATCCAAGTCGTCCACTTCTCCGATATTCACATTGACCCTTTATATCTG
CCTGGCGCCAATACTGACTGCGGCAAGCCCATCTGCTGCAGTGACAAGCCCGGTAACAACGACTCGCCTGCCGGA
CTGTTTGGAGACCACGACTGCGATGTGCCGCATACGCTAGAGAAGAGCATGTATGATGCTATCCGAACCGTGGCA
CCCAACGCTGCGTTTGCTATCTTTACGGGTGACATCGTCGACCACGCCGTATGGGACACATCGGCGCGTCACAAC
AAGAAAAGCATTCGCAATGCCTACGACGTCATGAGGTCGCAACTCGGCAATCTGACAGTCTTCGCTATCGCCGGC
AATCACGAAGCACATCCGGTGAACGCTTTTCCGACACGCGACGTTCGCGAAAAAACTCCGTCACTCCATCGTCAG
CTATCGGCCGAGTGGTCTAGATGGATCGATGTGGATGCTAAGTCTGATACGCAAGAGTGTTTCGAAATCTAA
Gene >Ophio5|4245
ATGCGTGCTCTTATTGTGCTTCCACTCCTTGTGCCTCGCGTGGTGGCCTTCACGTGTGGGCTTTGCACGGTGCCC
ATCTCTCTCCCCCCTCTCCCCCCCTGGCACAGCCTGAGCTGAGCTGACTGGATGCGAGACAGGACAAGCTTTTTC
CGAAGCCAAGGAGCTCAAAAGTGCCGGAAACCACTCCCCATTGATAACTTGGATGCAGGAACAGTGCAGTTACGC
GGAGGACGCTGATGTCTGCAGAGACGCTGTTCCACAGCAGGCCCCAATTTTCGCCAAAGTTCTACGAAACAACGG
TGAAGGCTCCCCGGCCTTTAAAGCCTTGAGCGCATTCATGCTAGGCGTCTGCAGTGTCCCCAGCATCACACCCCG
GATTCCGTCCTTGTCGCCTAAACCGGCCCGCGGCAGGCCGAGTTGGTCCAGTGGTAAAGCGCCGATCCAAGTCGT
CCACTTCTCCGATATTCACATTGACCCTTTATATCTGCCTGGCGCCAATACTGACTGCGGCAAGCCCATCTGCTG
CAGGTGAGTGAGACGGCGTCAGGAGGGTTTGGGGTTTAGTGCCGATAGTGGCGACTATTGCATTTAGGCCTTACA
CGACGGATAGTGACAAGCCCGGTAACAACGACTCGCCTGCCGGACTGTTTGGAGACCACGACTGCGATGTGCCGC
ATACGCTAGAGAAGAGCATGTATGATGCTATCCGAACCGTGGCACCCAACGCTGCGTTTGCTATCTTTACGGGTG
ACATCGTCGACCACGCCGTATGGGACACATCGGCGCGTCACAACAAGAAAAGCAGTCCGTCCCTTGACCCCTCCT
CTCTTCCACCTCCCTCTTCTGCCTTGATGAGCTCCCTAACGAACGCGTTATAGTTCGCAATGCCTACGACGTCAT
GAGGTCGCAACTCGGCAATCTGACAGTCTTCGCTATCGCCGGCAATCACGAAGCACATCCGGTGAACGCTTTTCC
GACACGCGACGTTCGCGAAAAAACTCCGTCACTCCATCGTCAGCTATCGGCCGAGTGGTCTAGATGGATCGATGT
GGATGCTAAGTCTGATACGCAAGAGTACGGCTCGTATACAACTACGGTCGCGGGGAGTAATCTTCGGATTATCTC
ACTAAACACTAACCTATATTATGCTCATAATTTATAGGTGTTTCGAAATCTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail