Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophio5\|4240
Gene name
Location	scaffold_333:20128..21192
Strand	+
Gene length (bp)	1064
Transcript length (bp)	1005
Coding sequence length (bp)	1002
Protein length (aa)	334

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF05368	NmrA	NmrA-like family	3.8E-38	8	257
PF13460	NAD_binding_10	NAD(P)H-binding	4.2E-14	12	136
PF01370	Epimerase	NAD dependent epimerase/dehydratase family	1.9E-04	8	119

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q5ZID0\|NMRL1_CHICK	NmrA-like family domain-containing protein 1 OS=Gallus gallus GN=NMRAL1 PE=2 SV=1	3	283	9.0E-27
sp\|Q0VCN1\|NMRL1_BOVIN	NmrA-like family domain-containing protein 1 OS=Bos taurus GN=NMRAL1 PE=2 SV=1	3	283	1.0E-25
sp\|Q54LJ8\|NMRL1_DICDI	NmrA-like family domain-containing protein DDB_G0286605 OS=Dictyostelium discoideum GN=DDB_G0286605 PE=2 SV=1	5	310	2.0E-24
sp\|Q9HBL8\|NMRL1_HUMAN	NmrA-like family domain-containing protein 1 OS=Homo sapiens GN=NMRAL1 PE=1 SV=1	4	283	5.0E-23
sp\|Q8K2T1\|NMRL1_MOUSE	NmrA-like family domain-containing protein 1 OS=Mus musculus GN=Nmral1 PE=1 SV=1	3	283	1.0E-21

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 23	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophio5\|4240 MASNTKTIAVFGATGKQGGAVARSLLQNRTSFSVRAISRNPGSNASRSLTEAGAQVVQADGFDRQQMRRAFDDCW GAFVNLNSDDALFRQPDAPTEIDLGKAIVDAAVDAGIEHLVFSSGPPCLEMTGGKVNLKAMESKYQIETYARRRG HFKTLTPINAAWYLENFLDKQAAPIFGGFPYFPDDDGYLTFRVPNWGGSNEVPFVSIGDDYGDIVHGIFLDPERY DGRVIHGASFMIPFDQLVAAFEAATGKKARFEPLLPNWEAFDTKGIPELNDVKLMFAFTQTTDGLYFGPEPSETD TAVELKKATSKALSRPEEMVSAREWFAKHFAAKP
Coding	>Ophio5\|4240 ATGGCGTCCAACACAAAGACCATCGCCGTCTTCGGCGCCACCGGCAAGCAGGGAGGCGCCGTCGCCCGCTCGCTG CTTCAGAACCGCACCTCGTTTAGCGTCCGCGCCATCAGCCGTAACCCCGGATCCAATGCCAGCCGTTCCCTGACA GAGGCCGGCGCTCAAGTTGTTCAGGCCGATGGCTTCGACCGCCAGCAGATGCGCCGCGCCTTTGATGACTGCTGG GGCGCCTTTGTGAACCTCAACTCGGATGATGCGCTCTTTAGGCAGCCGGATGCGCCGACTGAGATTGATCTGGGA AAGGCCATCGTCGATGCCGCCGTCGACGCTGGTATTGAGCACCTCGTCTTTAGCTCCGGTCCGCCATGCCTCGAG ATGACGGGCGGCAAGGTCAATTTGAAGGCCATGGAGTCAAAATACCAAATCGAGACGTACGCCCGCCGGCGCGGC CACTTCAAAACACTGACGCCCATCAACGCCGCCTGGTACCTCGAAAACTTTCTCGACAAACAGGCTGCCCCCATC TTCGGCGGCTTCCCATACTTCCCCGACGACGACGGCTACCTGACCTTCCGTGTGCCCAACTGGGGCGGCTCCAAC GAGGTGCCCTTCGTCAGCATCGGTGACGACTATGGCGATATTGTCCACGGCATCTTTCTCGATCCGGAGCGGTAC GACGGCCGCGTCATCCACGGTGCCAGCTTCATGATACCCTTTGACCAGCTCGTCGCCGCCTTTGAAGCAGCCACG GGCAAGAAAGCCCGCTTCGAGCCGCTTTTGCCCAACTGGGAGGCCTTCGACACAAAGGGCATTCCCGAGCTGAAC GACGTCAAGCTCATGTTTGCCTTTACCCAGACCACCGACGGCCTCTACTTTGGCCCCGAGCCCAGCGAGACGGAC ACGGCGGTCGAGCTGAAGAAGGCTACGTCCAAGGCCCTATCTCGGCCCGAGGAGATGGTGAGCGCGCGGGAGTGG TTTGCGAAGCACTTTGCCGCCAAGCCG
Transcript	>Ophio5\|4240 ATGGCGTCCAACACAAAGACCATCGCCGTCTTCGGCGCCACCGGCAAGCAGGGAGGCGCCGTCGCCCGCTCGCTG CTTCAGAACCGCACCTCGTTTAGCGTCCGCGCCATCAGCCGTAACCCCGGATCCAATGCCAGCCGTTCCCTGACA GAGGCCGGCGCTCAAGTTGTTCAGGCCGATGGCTTCGACCGCCAGCAGATGCGCCGCGCCTTTGATGACTGCTGG GGCGCCTTTGTGAACCTCAACTCGGATGATGCGCTCTTTAGGCAGCCGGATGCGCCGACTGAGATTGATCTGGGA AAGGCCATCGTCGATGCCGCCGTCGACGCTGGTATTGAGCACCTCGTCTTTAGCTCCGGTCCGCCATGCCTCGAG ATGACGGGCGGCAAGGTCAATTTGAAGGCCATGGAGTCAAAATACCAAATCGAGACGTACGCCCGCCGGCGCGGC CACTTCAAAACACTGACGCCCATCAACGCCGCCTGGTACCTCGAAAACTTTCTCGACAAACAGGCTGCCCCCATC TTCGGCGGCTTCCCATACTTCCCCGACGACGACGGCTACCTGACCTTCCGTGTGCCCAACTGGGGCGGCTCCAAC GAGGTGCCCTTCGTCAGCATCGGTGACGACTATGGCGATATTGTCCACGGCATCTTTCTCGATCCGGAGCGGTAC GACGGCCGCGTCATCCACGGTGCCAGCTTCATGATACCCTTTGACCAGCTCGTCGCCGCCTTTGAAGCAGCCACG GGCAAGAAAGCCCGCTTCGAGCCGCTTTTGCCCAACTGGGAGGCCTTCGACACAAAGGGCATTCCCGAGCTGAAC GACGTCAAGCTCATGTTTGCCTTTACCCAGACCACCGACGGCCTCTACTTTGGCCCCGAGCCCAGCGAGACGGAC ACGGCGGTCGAGCTGAAGAAGGCTACGTCCAAGGCCCTATCTCGGCCCGAGGAGATGGTGAGCGCGCGGGAGTGG TTTGCGAAGCACTTTGCCGCCAAGCCGTAG
Gene	>Ophio5\|4240 ATGGCGTCCAACACAAAGACCATCGCCGTCTTCGGCGCCACCGGCAAGCAGGGAGGCGCCGTCGCCCGCTCGCTG CTTCAGAACCGCACCTCGTTTAGCGTCCGCGCCATCAGCCGTAACCCCGGATCCAATGCCAGCCGTTCCCTGACA GAGGCCGGCGCTCAAGTTGTTCAGGCCGATGGCTTCGACCGCCAGCAGATGCGCCGCGCCTTTGATGACTGCTGG GGCGCCTTTGTGAACCTCAACTCGGATGATGCGCTCTTTAGGCAGCCGGATGCGCCGACTGAGATTGATCTGGGA AAGGCCATCGTCGATGCCGCCGTCGACGCTGGTATTGAGCACCTCGTCTTTAGCTCCGGTCCGCCATGCCTCGAG ATGACGGGCGGCAAGGTCAATTTGAAGGCCATGGAGTGTGAGTCTCCCCTTGATGACTGGGCGTGGTGAAATAGG TGGCCAAACTCCGCCCTATAGCAAAATACCAAATCGAGACGTACGCCCGCCGGCGCGGCCACTTCAAAACACTGA CGCCCATCAACGCCGCCTGGTACCTCGAAAACTTTCTCGACAAACAGGCTGCCCCCATCTTCGGCGGCTTCCCAT ACTTCCCCGACGACGACGGCTACCTGACCTTCCGTGTGCCCAACTGGGGCGGCTCCAACGAGGTGCCCTTCGTCA GCATCGGTGACGACTATGGCGATATTGTCCACGGCATCTTTCTCGATCCGGAGCGGTACGACGGCCGCGTCATCC ACGGTGCCAGCTTCATGATACCCTTTGACCAGCTCGTCGCCGCCTTTGAAGCAGCCACGGGCAAGAAAGCCCGCT TCGAGCCGCTTTTGCCCAACTGGGAGGCCTTCGACACAAAGGGCATTCCCGAGCTGAACGACGTCAAGCTCATGT TTGCCTTTACCCAGACCACCGACGGCCTCTACTTTGGCCCCGAGCCCAGCGAGACGGACACGGCGGTCGAGCTGA AGAAGGCTACGTCCAAGGCCCTATCTCGGCCCGAGGAGATGGTGAGCGCGCGGGAGTGGTTTGCGAAGCACTTTG CCGCCAAGCCGTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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