© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|4235 |
| Gene name | |
| Location | scaffold_333:7946..9172 |
| Strand | + |
| Gene length (bp) | 1226 |
| Transcript length (bp) | 1131 |
| Coding sequence length (bp) | 1128 |
| Protein length (aa) | 376 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 38 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 288 | 310 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 117.31 | 63.77 | 170.86 |
| CcL | In ants, during behavior modification | 92.56 | 48.69 | 136.42 |
| CcD | In ants, recently dead | 89.27 | 48.32 | 130.22 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.330555 | no |
| SC16a | CcD | 0.251814 | no |
| CcL | CcD | 0.903955 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|4235 MLEYFTYRKVKKHRAEKKAEESAKPVAESLGVNVDDDAAVLRPDDESFLKDLLSRDDGPVPRLPTRTESAAELDW PSSDNEATSAAAQKPTVEKNDASSSTVETAPKPAGRLSVFLTRYRKTDSGLQPPQGVVSPDEGERETKDLSRVLD RLNLSARNNKVVTTDSSTLLQNFTQVFKDLVNGVPTAVDDLQKLVEDRDGTISRGFEKLPSSLKKLVVQLPDKIT NSLGPEILAAAAASQGIKTDTGGGIKGVAKKVLVPHNLAELVTKPGAIVGMLRAIVEVLKTRWPAFIGMNVIWSV ALTLLLFVLWYCHKRGREERLERERSSQAVDGADRIEELADDPALPAPESSARDCSVSSGPSPVLRKPLPVERRS T |
| Coding | >Ophio5|4235 ATGCTAGAGTACTTCACATACAGAAAGGTCAAGAAGCACAGAGCGGAGAAGAAAGCGGAAGAATCGGCCAAGCCT GTGGCCGAGTCCTTGGGCGTCAACGTCGACGACGACGCCGCAGTTCTCCGTCCCGACGACGAATCCTTCCTCAAG GACCTCTTATCCCGCGATGACGGGCCGGTGCCGCGTCTGCCCACTCGGACGGAATCAGCAGCTGAACTCGACTGG CCATCGTCGGACAACGAAGCGACGTCGGCAGCAGCACAGAAGCCGACTGTTGAAAAAAATGACGCTTCCTCTTCG ACCGTCGAAACGGCGCCCAAGCCGGCCGGTCGCCTCTCCGTCTTCTTGACGCGCTATCGCAAGACAGACTCGGGT CTGCAGCCGCCACAAGGCGTCGTGTCGCCGGATGAGGGCGAACGCGAGACGAAAGATTTAAGCCGTGTGCTGGAT CGGCTGAACCTCAGCGCGCGGAATAACAAGGTGGTGACGACGGATTCGTCGACGCTGCTGCAGAACTTCACGCAG GTCTTCAAGGACCTGGTCAACGGCGTGCCGACGGCCGTGGACGATTTGCAGAAGTTGGTAGAGGACCGCGATGGT ACCATCTCCAGGGGCTTCGAAAAGCTGCCGTCGTCGCTCAAGAAGCTCGTTGTCCAGCTTCCGGACAAGATTACC AACAGCCTTGGGCCCGAGATTCTCGCCGCCGCCGCCGCCAGCCAGGGCATCAAGACGGACACTGGGGGAGGAATC AAGGGCGTCGCCAAAAAGGTTCTCGTGCCGCATAATCTCGCCGAGCTGGTCACCAAGCCCGGCGCCATCGTCGGC ATGCTTAGGGCCATTGTCGAGGTGCTTAAGACGCGCTGGCCGGCTTTCATCGGCATGAATGTCATATGGAGCGTT GCCCTGACCTTGCTCCTTTTCGTTCTGTGGTACTGCCACAAGCGCGGCCGCGAAGAGCGCCTGGAGCGCGAACGC TCTTCGCAGGCCGTCGACGGTGCCGATCGGATTGAAGAGCTTGCCGACGATCCTGCGCTGCCGGCCCCTGAGTCG TCGGCGCGGGACTGCTCTGTGTCGTCAGGGCCATCTCCCGTGCTGCGGAAACCGCTCCCTGTCGAGCGTCGCAGC ACT |
| Transcript | >Ophio5|4235 ATGCTAGAGTACTTCACATACAGAAAGGTCAAGAAGCACAGAGCGGAGAAGAAAGCGGAAGAATCGGCCAAGCCT GTGGCCGAGTCCTTGGGCGTCAACGTCGACGACGACGCCGCAGTTCTCCGTCCCGACGACGAATCCTTCCTCAAG GACCTCTTATCCCGCGATGACGGGCCGGTGCCGCGTCTGCCCACTCGGACGGAATCAGCAGCTGAACTCGACTGG CCATCGTCGGACAACGAAGCGACGTCGGCAGCAGCACAGAAGCCGACTGTTGAAAAAAATGACGCTTCCTCTTCG ACCGTCGAAACGGCGCCCAAGCCGGCCGGTCGCCTCTCCGTCTTCTTGACGCGCTATCGCAAGACAGACTCGGGT CTGCAGCCGCCACAAGGCGTCGTGTCGCCGGATGAGGGCGAACGCGAGACGAAAGATTTAAGCCGTGTGCTGGAT CGGCTGAACCTCAGCGCGCGGAATAACAAGGTGGTGACGACGGATTCGTCGACGCTGCTGCAGAACTTCACGCAG GTCTTCAAGGACCTGGTCAACGGCGTGCCGACGGCCGTGGACGATTTGCAGAAGTTGGTAGAGGACCGCGATGGT ACCATCTCCAGGGGCTTCGAAAAGCTGCCGTCGTCGCTCAAGAAGCTCGTTGTCCAGCTTCCGGACAAGATTACC AACAGCCTTGGGCCCGAGATTCTCGCCGCCGCCGCCGCCAGCCAGGGCATCAAGACGGACACTGGGGGAGGAATC AAGGGCGTCGCCAAAAAGGTTCTCGTGCCGCATAATCTCGCCGAGCTGGTCACCAAGCCCGGCGCCATCGTCGGC ATGCTTAGGGCCATTGTCGAGGTGCTTAAGACGCGCTGGCCGGCTTTCATCGGCATGAATGTCATATGGAGCGTT GCCCTGACCTTGCTCCTTTTCGTTCTGTGGTACTGCCACAAGCGCGGCCGCGAAGAGCGCCTGGAGCGCGAACGC TCTTCGCAGGCCGTCGACGGTGCCGATCGGATTGAAGAGCTTGCCGACGATCCTGCGCTGCCGGCCCCTGAGTCG TCGGCGCGGGACTGCTCTGTGTCGTCAGGGCCATCTCCCGTGCTGCGGAAACCGCTCCCTGTCGAGCGTCGCAGC ACTTGA |
| Gene | >Ophio5|4235 ATGCTAGAGTACTTCACATACAGAAAGGTCAAGAAGCACAGAGCGGAGAAGAAAGCGGAAGAATCGGCCAAGCCT GTGGCCGAGTCCTTGGGCGTCAACGTCGACGACGACGCCGCAGTTCTCCGTCCCGACGACGAATCCTTCCTCAAG GACCTCTTATCCCGCGATGACGGGCCGGTGCCGCGTCTGCCCACTCGGACGGAATCAGCAGCTGAACTCGACTGG CCATCGTCGGACAACGAAGCGACGTCGGCAGCAGCACAGAAGCCGACTGTTGAAAAAAATGACGCTTCCTCTTCG ACCGTCGAAACGGCGCCCAAGCCGGCCGGTCGCCTCTCCGTCTTCTTGACGCGCTATCGCAAGACAGACTCGGGT CTGCAGCCGCCACAAGGCGTCGTGTCGCCGGATGAGGGCGAACGCGAGACGAAAGATTTAAGCCGTGTGCTGGAT CGGCTGAACCTCAGCGCGCGGAATAACAAGGTGGTGACGACGGATTCGTCGACGCTGCTGCAGAACTTCACGCAG GTCTTCAAGGACCTGGTCAACGGCGTGCCGACGGCCGTGGACGATTTGCAGAAGTTGGTAGAGGACCGCGATGGT ACCATCTCCAGGGGCTTCGAAAAGCTGCCGTCGTCGCTCAAGAAGCTCGTTGTCCAGCTTCCGGACAAGATTACC AACAGCCTTGGGCCCGAGATTCTCGCCGCCGCCGCCGCCAGCCAGGGCATCAAGACGGACACTGGGGGAGGAATC AAGGGCGTCGCCAAAAAGGTTCTCGTGCCGCATAATCTCGCCGAGCTGGTCACCAAGCCCGGCGCCATCGTCGGC ATGCTTAGGGCCATTGTCGAGGTGCTTAAGACGCGCTGGCCGGCTTTCATCGGCATGAATGTCATATGGAGCGTT GCCCTGACCTGTAAGAGCTTCACCTCTCTCTCAACCTCCACGTTTCCTACACTGCATTCAACATAAACCGCTATT CTTTCTTACGCTGACTTGAATCGTATCCAGTGCTCCTTTTCGTTCTGTGGTACTGCCACAAGCGCGGCCGCGAAG AGCGCCTGGAGCGCGAACGCTCTTCGCAGGCCGTCGACGGTGCCGATCGGATTGAAGAGCTTGCCGACGATCCTG CGCTGCCGGCCCCTGAGTCGTCGGCGCGGGACTGCTCTGTGTCGTCAGGGCCATCTCCCGTGCTGCGGAAACCGC TCCCTGTCGAGCGTCGCAGCACTTGA |