© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|4234 |
| Gene name | |
| Location | scaffold_333:6375..7359 |
| Strand | + |
| Gene length (bp) | 984 |
| Transcript length (bp) | 984 |
| Coding sequence length (bp) | 981 |
| Protein length (aa) | 327 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07574 | SMC_Nse1 | Nse1 non-SMC component of SMC5-6 complex | 7.6E-66 | 14 | 202 |
| PF08746 | zf-RING-like | RING-like domain | 7.1E-14 | 226 | 268 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q3T0X7|NSE1_BOVIN | Non-structural maintenance of chromosomes element 1 homolog OS=Bos taurus GN=NSMCE1 PE=2 SV=2 | 12 | 272 | 1.0E-13 |
| sp|Q8WV22|NSE1_HUMAN | Non-structural maintenance of chromosomes element 1 homolog OS=Homo sapiens GN=NSMCE1 PE=1 SV=5 | 12 | 272 | 3.0E-13 |
| sp|Q6P881|NSE1_XENTR | Non-structural maintenance of chromosomes element 1 homolog OS=Xenopus tropicalis GN=nsmce1 PE=2 SV=1 | 11 | 304 | 4.0E-13 |
| sp|Q499U6|NSE1_RAT | Non-structural maintenance of chromosomes element 1 homolog OS=Rattus norvegicus GN=Nsmce1 PE=2 SV=2 | 12 | 272 | 6.0E-13 |
| sp|Q9D720|NSE1_MOUSE | Non-structural maintenance of chromosomes element 1 homolog OS=Mus musculus GN=Nsmce1 PE=1 SV=1 | 12 | 272 | 7.0E-13 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q3T0X7|NSE1_BOVIN | Non-structural maintenance of chromosomes element 1 homolog OS=Bos taurus GN=NSMCE1 PE=2 SV=2 | 12 | 272 | 1.0E-13 |
| sp|Q8WV22|NSE1_HUMAN | Non-structural maintenance of chromosomes element 1 homolog OS=Homo sapiens GN=NSMCE1 PE=1 SV=5 | 12 | 272 | 3.0E-13 |
| sp|Q6P881|NSE1_XENTR | Non-structural maintenance of chromosomes element 1 homolog OS=Xenopus tropicalis GN=nsmce1 PE=2 SV=1 | 11 | 304 | 4.0E-13 |
| sp|Q499U6|NSE1_RAT | Non-structural maintenance of chromosomes element 1 homolog OS=Rattus norvegicus GN=Nsmce1 PE=2 SV=2 | 12 | 272 | 6.0E-13 |
| sp|Q9D720|NSE1_MOUSE | Non-structural maintenance of chromosomes element 1 homolog OS=Mus musculus GN=Nsmce1 PE=1 SV=1 | 12 | 272 | 7.0E-13 |
| sp|Q5RAZ5|NSE1_PONAB | Non-structural maintenance of chromosomes element 1 homolog OS=Pongo abelii GN=NSMCE1 PE=2 SV=1 | 12 | 272 | 1.0E-12 |
| sp|Q53EK2|NSE1_SCHPO | Non-structural maintenance of chromosomes element 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nse1 PE=1 SV=1 | 9 | 279 | 2.0E-12 |
| sp|Q6DGT7|NSE1_DANRE | Non-structural maintenance of chromosomes element 1 homolog OS=Danio rerio GN=nsmce1 PE=2 SV=1 | 170 | 272 | 3.0E-11 |
| sp|Q6PAF4|NSE1_XENLA | Non-structural maintenance of chromosomes element 1 homolog OS=Xenopus laevis GN=nsmce1 PE=2 SV=1 | 11 | 272 | 1.0E-10 |
| sp|Q07913|NSE1_YEAST | Non-structural maintenance of chromosomes element 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NSE1 PE=1 SV=1 | 40 | 244 | 7.0E-09 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006281 | DNA repair | Yes |
| GO:0030915 | Smc5-Smc6 complex | Yes |
| GO:0044237 | cellular metabolic process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0106068 | SUMO ligase complex | No |
| GO:0032991 | protein-containing complex | No |
| GO:0050896 | response to stimulus | No |
| GO:0006259 | DNA metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:1902494 | catalytic complex | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0033554 | cellular response to stress | No |
| GO:1990234 | transferase complex | No |
| GO:0044260 | cellular macromolecule metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:0005575 | cellular_component | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0051716 | cellular response to stimulus | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0006974 | cellular response to DNA damage stimulus | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0006950 | response to stress | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 33 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 13.33 | 4.96 | 21.69 |
| CcL | In ants, during behavior modification | 73.79 | 34.76 | 112.82 |
| CcD | In ants, recently dead | 61.90 | 33.07 | 90.73 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.000286 | yes |
| SC16a | CcD | 0.000286 | yes |
| CcL | CcD | 0.520010 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|4234 MEQDLLRRGYDDSHRAFLQALLARGTVTFEESQSILAAIVNAKNGANGGTRPEQVSQEFFESYLDMVSEAASMFD YEIRSTVHQLTKQRIYALVNTTSDPQTQLATTYNAEELAFIKRLLDGIFDKYNRPRMEVFAITEMQAIKFARPNR RLSRTGEAEPSSDKGLKHSEVERVLAGLVDGGWLEKSKSGFYSVTPRALLELRPWLIDMYNDGDAGQDDWQRIKF CEACKDIVTAGLRCADPSCTLRLHDICQEAFWRVRRTTSCPKCSREWTGTSFVGERAVTSTEAYQRGRRRGGGRR STLADQVMENQGFEEGSDGEQENGQDE |
| Coding | >Ophio5|4234 ATGGAACAAGACCTCCTGAGGCGCGGCTACGACGACAGCCACCGCGCATTTCTGCAGGCGCTCCTGGCCCGCGGC ACAGTTACATTCGAGGAGTCGCAATCGATACTCGCGGCCATCGTCAACGCGAAGAACGGCGCGAATGGAGGGACG CGCCCCGAGCAAGTGAGCCAGGAGTTTTTCGAGTCATACCTGGACATGGTCTCGGAAGCGGCCTCCATGTTCGAC TACGAGATTCGCAGTACCGTGCACCAGCTCACGAAGCAACGGATCTACGCCCTCGTCAACACCACATCAGACCCT CAGACGCAGCTCGCAACAACATACAACGCCGAGGAGCTGGCCTTCATCAAGCGATTACTCGACGGCATCTTCGAC AAGTACAACAGGCCGCGGATGGAGGTGTTCGCCATCACGGAGATGCAGGCCATCAAGTTTGCGAGACCGAACCGG AGGCTGAGCCGGACGGGTGAAGCCGAGCCGTCGAGCGACAAGGGGCTGAAGCACAGCGAGGTAGAGCGAGTCCTG GCAGGCCTCGTTGACGGGGGGTGGCTGGAGAAGAGCAAAAGCGGTTTCTACTCGGTCACGCCGCGAGCGCTGCTG GAGTTGCGGCCGTGGCTCATCGACATGTACAACGATGGCGATGCCGGCCAGGACGACTGGCAGCGCATCAAGTTC TGCGAGGCCTGCAAGGACATTGTCACGGCGGGACTGCGATGCGCCGACCCCTCCTGCACGCTGCGGCTGCATGAC ATCTGCCAGGAGGCCTTCTGGAGGGTGCGCAGGACGACAAGCTGTCCCAAGTGCTCGCGAGAGTGGACGGGAACG AGCTTTGTCGGGGAGCGGGCCGTCACCTCGACAGAGGCCTATCAGAGGGGACGCAGACGAGGTGGCGGCAGGAGG AGCACGCTGGCGGACCAGGTCATGGAGAATCAGGGATTCGAGGAAGGGAGCGACGGCGAGCAAGAGAATGGCCAG GACGAA |
| Transcript | >Ophio5|4234 ATGGAACAAGACCTCCTGAGGCGCGGCTACGACGACAGCCACCGCGCATTTCTGCAGGCGCTCCTGGCCCGCGGC ACAGTTACATTCGAGGAGTCGCAATCGATACTCGCGGCCATCGTCAACGCGAAGAACGGCGCGAATGGAGGGACG CGCCCCGAGCAAGTGAGCCAGGAGTTTTTCGAGTCATACCTGGACATGGTCTCGGAAGCGGCCTCCATGTTCGAC TACGAGATTCGCAGTACCGTGCACCAGCTCACGAAGCAACGGATCTACGCCCTCGTCAACACCACATCAGACCCT CAGACGCAGCTCGCAACAACATACAACGCCGAGGAGCTGGCCTTCATCAAGCGATTACTCGACGGCATCTTCGAC AAGTACAACAGGCCGCGGATGGAGGTGTTCGCCATCACGGAGATGCAGGCCATCAAGTTTGCGAGACCGAACCGG AGGCTGAGCCGGACGGGTGAAGCCGAGCCGTCGAGCGACAAGGGGCTGAAGCACAGCGAGGTAGAGCGAGTCCTG GCAGGCCTCGTTGACGGGGGGTGGCTGGAGAAGAGCAAAAGCGGTTTCTACTCGGTCACGCCGCGAGCGCTGCTG GAGTTGCGGCCGTGGCTCATCGACATGTACAACGATGGCGATGCCGGCCAGGACGACTGGCAGCGCATCAAGTTC TGCGAGGCCTGCAAGGACATTGTCACGGCGGGACTGCGATGCGCCGACCCCTCCTGCACGCTGCGGCTGCATGAC ATCTGCCAGGAGGCCTTCTGGAGGGTGCGCAGGACGACAAGCTGTCCCAAGTGCTCGCGAGAGTGGACGGGAACG AGCTTTGTCGGGGAGCGGGCCGTCACCTCGACAGAGGCCTATCAGAGGGGACGCAGACGAGGTGGCGGCAGGAGG AGCACGCTGGCGGACCAGGTCATGGAGAATCAGGGATTCGAGGAAGGGAGCGACGGCGAGCAAGAGAATGGCCAG GACGAATAA |
| Gene | >Ophio5|4234 ATGGAACAAGACCTCCTGAGGCGCGGCTACGACGACAGCCACCGCGCATTTCTGCAGGCGCTCCTGGCCCGCGGC ACAGTTACATTCGAGGAGTCGCAATCGATACTCGCGGCCATCGTCAACGCGAAGAACGGCGCGAATGGAGGGACG CGCCCCGAGCAAGTGAGCCAGGAGTTTTTCGAGTCATACCTGGACATGGTCTCGGAAGCGGCCTCCATGTTCGAC TACGAGATTCGCAGTACCGTGCACCAGCTCACGAAGCAACGGATCTACGCCCTCGTCAACACCACATCAGACCCT CAGACGCAGCTCGCAACAACATACAACGCCGAGGAGCTGGCCTTCATCAAGCGATTACTCGACGGCATCTTCGAC AAGTACAACAGGCCGCGGATGGAGGTGTTCGCCATCACGGAGATGCAGGCCATCAAGTTTGCGAGACCGAACCGG AGGCTGAGCCGGACGGGTGAAGCCGAGCCGTCGAGCGACAAGGGGCTGAAGCACAGCGAGGTAGAGCGAGTCCTG GCAGGCCTCGTTGACGGGGGGTGGCTGGAGAAGAGCAAAAGCGGTTTCTACTCGGTCACGCCGCGAGCGCTGCTG GAGTTGCGGCCGTGGCTCATCGACATGTACAACGATGGCGATGCCGGCCAGGACGACTGGCAGCGCATCAAGTTC TGCGAGGCCTGCAAGGACATTGTCACGGCGGGACTGCGATGCGCCGACCCCTCCTGCACGCTGCGGCTGCATGAC ATCTGCCAGGAGGCCTTCTGGAGGGTGCGCAGGACGACAAGCTGTCCCAAGTGCTCGCGAGAGTGGACGGGAACG AGCTTTGTCGGGGAGCGGGCCGTCACCTCGACAGAGGCCTATCAGAGGGGACGCAGACGAGGTGGCGGCAGGAGG AGCACGCTGGCGGACCAGGTCATGGAGAATCAGGGATTCGAGGAAGGGAGCGACGGCGAGCAAGAGAATGGCCAG GACGAATAA |