Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophio5\|4222
Gene name
Location	scaffold_331:17668..19673
Strand	+
Gene length (bp)	2005
Transcript length (bp)	1953
Coding sequence length (bp)	1950
Protein length (aa)	650

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF05686	Glyco_transf_90	Glycosyl transferase family 90	3.3E-11	501	620

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q5K8R6\|CXT1_CRYNJ	Beta-1,2-xylosyltransferase 1 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=CXT1 PE=1 SV=1	82	625	2.0E-44
sp\|Q6UW63\|KDEL1_HUMAN	KDEL motif-containing protein 1 OS=Homo sapiens GN=KDELC1 PE=1 SV=1	507	618	2.0E-08
sp\|Q9JHP7\|KDEL1_MOUSE	KDEL motif-containing protein 1 OS=Mus musculus GN=Kdelc1 PE=1 SV=1	507	618	2.0E-06

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 37	0.5

Transmembrane Domains

Domain #	Start	End	Length
1	16	33	17

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
SC16a	Pure fungal culture	39.71	21.76	57.65
CcL	In ants, during behavior modification	14.06	5.86	22.27
CcD	In ants, recently dead	7.61	2.90	12.31

Differential expression

Label1	Label2	Q-value	Significant difference
SC16a	CcL	0.000535	yes
SC16a	CcD	0.000286	yes
CcL	CcD	0.039666	yes

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophio5\|4222 MGNKLLSPTTFRRRPSARYAVVAVFILFAFYAFNRSSREIYVNTSSTSIIRHRVPVQLEKPLQPPSPPSPPTIYP DQSSADGTNHPIDKLIFDAQRSFAGLLSSESKSLEDAAQAYRRRRGRHPPPGFDKWYEFARSRNAVIVEDFFDQI YHDLEPFWGMDPLSMRRRASQFEMTINVRNGNASAVSDWFWTKIWLGMIKEIEKYLPDMDIALNAMDEPRIVATW ENVNKHVKKAAVTRRRPRARSVVSDFQKLPGPNKGDLAPKVPEIKWDETEPYWLIARRGCSPNSLARKAPLQTSF AEPPAISNDYAVQHLHQGYVSNYSKSNEVCHQPDLQGLQGLLIKPISTKATDVLFPMFGGSKLTVNNEILLPAPM YWNEEERFTGGQDHGDPWAEKADQVIWRGVATGGRNEDDNWRGFQRHRFVAMNNGTKISLIESGKEKPENFALAE ERYNVSAQREHKLGKWISDVSDVAFIDLFCDPPQDGWCNYTDFYFEPKPALNMATQFDSKYLPDIDGNSFSGRYL GFLRSSSLPIKASVWREWHDSRLVPWKHFVPMDNRFSDYYGILDYFIGSNDRDGHDEAAERIASDGKEWAERVLR KEDMLIYVLRLLLEYARVVDKRRESMGWVDDILKDPSLEQPQPGRWWLLS
Coding	>Ophio5\|4222 ATGGGCAACAAACTCTTATCCCCGACAACGTTCCGCCGACGGCCCTCGGCCCGGTACGCCGTCGTTGCCGTCTTC ATCCTCTTCGCCTTCTACGCCTTCAACCGCAGCTCTCGCGAAATCTATGTTAACACTTCCTCCACTTCCATCATA CGTCACCGAGTTCCTGTTCAACTCGAGAAACCACTGCAGCCGCCGTCTCCGCCGTCGCCGCCTACTATTTACCCC GACCAATCCTCCGCCGACGGCACGAACCACCCCATCGACAAGCTAATATTCGATGCCCAGCGTTCCTTCGCCGGA CTGCTCTCCTCTGAGTCAAAGTCGCTGGAAGACGCCGCTCAGGCGTACCGAAGACGCCGCGGCCGCCACCCCCCC CCGGGTTTCGACAAGTGGTACGAGTTTGCTCGCTCCCGCAATGCCGTCATCGTCGAGGACTTCTTCGACCAGATC TACCATGACCTCGAGCCCTTCTGGGGAATGGACCCCCTGAGCATGCGCCGTCGGGCGAGCCAATTCGAGATGACC ATCAATGTCCGCAACGGTAATGCATCGGCGGTCTCGGATTGGTTCTGGACCAAGATATGGCTGGGGATGATCAAG GAGATTGAAAAGTACCTCCCCGACATGGACATTGCCCTCAACGCAATGGACGAGCCTCGCATTGTCGCTACTTGG GAGAACGTCAACAAGCACGTCAAGAAGGCGGCCGTAACCCGACGTCGGCCCAGGGCCCGGTCAGTCGTGTCCGAT TTCCAGAAACTGCCAGGCCCAAACAAGGGCGATTTGGCACCCAAGGTCCCTGAAATCAAGTGGGATGAGACGGAA CCGTACTGGCTCATCGCCCGCCGCGGCTGCTCCCCGAATAGCCTCGCTCGTAAGGCACCCCTGCAGACGTCTTTT GCCGAGCCTCCCGCCATCAGCAACGACTACGCCGTTCAACACCTCCACCAGGGCTACGTGTCAAACTACAGCAAG TCCAATGAAGTCTGTCATCAACCCGACCTGCAGGGCCTGCAGGGCCTACTCATCAAACCCATCAGCACCAAGGCG ACCGACGTCCTGTTTCCCATGTTCGGGGGCTCCAAGCTGACGGTCAACAACGAGATTCTTCTGCCCGCCCCCATG TACTGGAACGAGGAGGAGCGCTTCACCGGCGGCCAGGACCACGGCGATCCCTGGGCGGAAAAGGCCGACCAGGTC ATCTGGCGCGGCGTTGCCACCGGAGGCAGAAACGAGGACGACAACTGGAGGGGTTTTCAGCGCCATCGCTTCGTG GCCATGAATAACGGCACCAAGATCTCCCTGATCGAGTCGGGCAAGGAGAAGCCGGAGAATTTTGCGCTGGCCGAG GAGCGCTACAACGTGAGCGCGCAGAGGGAACACAAACTCGGCAAATGGATTTCCGACGTCTCTGATGTGGCCTTC ATCGACCTCTTTTGTGACCCTCCACAGGACGGCTGGTGCAATTACACCGACTTTTACTTCGAACCCAAGCCCGCG CTCAACATGGCGACCCAGTTCGACTCGAAATATCTGCCCGACATTGACGGTAACTCCTTCTCGGGCCGCTACCTC GGCTTCTTGCGGTCGAGCTCGCTGCCCATTAAGGCGTCCGTCTGGCGCGAGTGGCACGACAGCCGCCTGGTTCCG TGGAAGCACTTTGTGCCCATGGACAACCGCTTTTCCGACTATTACGGCATTCTCGACTACTTCATCGGCTCCAAC GACCGTGACGGCCACGACGAGGCCGCCGAGAGGATTGCCTCGGACGGAAAGGAGTGGGCGGAGCGGGTGTTGCGC AAGGAGGACATGCTGATCTACGTCTTGCGGCTGCTTCTGGAGTATGCTCGCGTCGTCGACAAGAGGAGAGAGTCG ATGGGCTGGGTCGACGACATACTCAAGGACCCGTCCCTGGAGCAGCCGCAGCCTGGACGGTGGTGGTTGCTGTCG
Transcript	>Ophio5\|4222 ATGGGCAACAAACTCTTATCCCCGACAACGTTCCGCCGACGGCCCTCGGCCCGGTACGCCGTCGTTGCCGTCTTC ATCCTCTTCGCCTTCTACGCCTTCAACCGCAGCTCTCGCGAAATCTATGTTAACACTTCCTCCACTTCCATCATA CGTCACCGAGTTCCTGTTCAACTCGAGAAACCACTGCAGCCGCCGTCTCCGCCGTCGCCGCCTACTATTTACCCC GACCAATCCTCCGCCGACGGCACGAACCACCCCATCGACAAGCTAATATTCGATGCCCAGCGTTCCTTCGCCGGA CTGCTCTCCTCTGAGTCAAAGTCGCTGGAAGACGCCGCTCAGGCGTACCGAAGACGCCGCGGCCGCCACCCCCCC CCGGGTTTCGACAAGTGGTACGAGTTTGCTCGCTCCCGCAATGCCGTCATCGTCGAGGACTTCTTCGACCAGATC TACCATGACCTCGAGCCCTTCTGGGGAATGGACCCCCTGAGCATGCGCCGTCGGGCGAGCCAATTCGAGATGACC ATCAATGTCCGCAACGGTAATGCATCGGCGGTCTCGGATTGGTTCTGGACCAAGATATGGCTGGGGATGATCAAG GAGATTGAAAAGTACCTCCCCGACATGGACATTGCCCTCAACGCAATGGACGAGCCTCGCATTGTCGCTACTTGG GAGAACGTCAACAAGCACGTCAAGAAGGCGGCCGTAACCCGACGTCGGCCCAGGGCCCGGTCAGTCGTGTCCGAT TTCCAGAAACTGCCAGGCCCAAACAAGGGCGATTTGGCACCCAAGGTCCCTGAAATCAAGTGGGATGAGACGGAA CCGTACTGGCTCATCGCCCGCCGCGGCTGCTCCCCGAATAGCCTCGCTCGTAAGGCACCCCTGCAGACGTCTTTT GCCGAGCCTCCCGCCATCAGCAACGACTACGCCGTTCAACACCTCCACCAGGGCTACGTGTCAAACTACAGCAAG TCCAATGAAGTCTGTCATCAACCCGACCTGCAGGGCCTGCAGGGCCTACTCATCAAACCCATCAGCACCAAGGCG ACCGACGTCCTGTTTCCCATGTTCGGGGGCTCCAAGCTGACGGTCAACAACGAGATTCTTCTGCCCGCCCCCATG TACTGGAACGAGGAGGAGCGCTTCACCGGCGGCCAGGACCACGGCGATCCCTGGGCGGAAAAGGCCGACCAGGTC ATCTGGCGCGGCGTTGCCACCGGAGGCAGAAACGAGGACGACAACTGGAGGGGTTTTCAGCGCCATCGCTTCGTG GCCATGAATAACGGCACCAAGATCTCCCTGATCGAGTCGGGCAAGGAGAAGCCGGAGAATTTTGCGCTGGCCGAG GAGCGCTACAACGTGAGCGCGCAGAGGGAACACAAACTCGGCAAATGGATTTCCGACGTCTCTGATGTGGCCTTC ATCGACCTCTTTTGTGACCCTCCACAGGACGGCTGGTGCAATTACACCGACTTTTACTTCGAACCCAAGCCCGCG CTCAACATGGCGACCCAGTTCGACTCGAAATATCTGCCCGACATTGACGGTAACTCCTTCTCGGGCCGCTACCTC GGCTTCTTGCGGTCGAGCTCGCTGCCCATTAAGGCGTCCGTCTGGCGCGAGTGGCACGACAGCCGCCTGGTTCCG TGGAAGCACTTTGTGCCCATGGACAACCGCTTTTCCGACTATTACGGCATTCTCGACTACTTCATCGGCTCCAAC GACCGTGACGGCCACGACGAGGCCGCCGAGAGGATTGCCTCGGACGGAAAGGAGTGGGCGGAGCGGGTGTTGCGC AAGGAGGACATGCTGATCTACGTCTTGCGGCTGCTTCTGGAGTATGCTCGCGTCGTCGACAAGAGGAGAGAGTCG ATGGGCTGGGTCGACGACATACTCAAGGACCCGTCCCTGGAGCAGCCGCAGCCTGGACGGTGGTGGTTGCTGTCG TGA
Gene	>Ophio5\|4222 ATGGGCAACAAACTCTTATCCCCGACAACGTTCCGCCGACGGCCCTCGGCCCGGTACGCCGTCGTTGCCGTCTTC ATCCTCTTCGCCTTCTACGCCTTCAACCGCAGCTCTCGCGAAATCTATGTTAACACTTCCTCCACTTCCATCATA CGTCACCGAGTTCCTGTTCAACTCGAGAAACCACTGCAGCCGCCGTCTCCGCCGTCGCCGCCTACTATTTACCCC GACCAATCCTCCGCCGACGGCACGAACCACCCCATCGACAAGCTAATATTCGATGCCCAGCGTTCCTTCGCCGGA CTGCTCTCCTCTGAGTCAAAGTCGCTGGAAGACGCCGCTCAGGCGTACCGAAGACGCCGCGGCCGCCACCCCCCC CCGGGTTTCGACAAGTGGTACGAGTTTGCTCGCTCCCGCAATGCCGTCATCGTCGAGGACTTCTTCGACCAGATC TACCATGACCTCGAGCCCTTCTGGGGAATGGACCCCCTGAGCATGCGCCGTCGGGCGAGCCAATTCGAGATGACC ATCAATGTCCGCAACGGTAATGCATCGGCGGTCTCGGATTGGTTCTGGACCAAGATATGGCTGGGGATGATCAAG GAGATTGAAAAGTACCTCCCCGACATGGACATTGCCCTCAACGCAATGGACGAGCCTCGCATTGTCGCTACTTGG GAGAACGTCAACAAGCACGTCAAGAAGGCGGCCGTAACCCGACGTCGGCCCAGGGCCCGGTCAGTCGTGTCCGAT TTCCAGAAACTGCCAGGCCCAAACAAGGGCGATTTGGCACCCAAGGTCCCTGAAATCAAGTGGGATGAGACGGGT AAGTCGACGGAAAACAAGAAGATCAGACGCTAAGGCTAACAAAATCAAAGAACCGTACTGGCTCATCGCCCGCCG CGGCTGCTCCCCGAATAGCCTCGCTCGTAAGGCACCCCTGCAGACGTCTTTTGCCGAGCCTCCCGCCATCAGCAA CGACTACGCCGTTCAACACCTCCACCAGGGCTACGTGTCAAACTACAGCAAGTCCAATGAAGTCTGTCATCAACC CGACCTGCAGGGCCTGCAGGGCCTACTCATCAAACCCATCAGCACCAAGGCGACCGACGTCCTGTTTCCCATGTT CGGGGGCTCCAAGCTGACGGTCAACAACGAGATTCTTCTGCCCGCCCCCATGTACTGGAACGAGGAGGAGCGCTT CACCGGCGGCCAGGACCACGGCGATCCCTGGGCGGAAAAGGCCGACCAGGTCATCTGGCGCGGCGTTGCCACCGG AGGCAGAAACGAGGACGACAACTGGAGGGGTTTTCAGCGCCATCGCTTCGTGGCCATGAATAACGGCACCAAGAT CTCCCTGATCGAGTCGGGCAAGGAGAAGCCGGAGAATTTTGCGCTGGCCGAGGAGCGCTACAACGTGAGCGCGCA GAGGGAACACAAACTCGGCAAATGGATTTCCGACGTCTCTGATGTGGCCTTCATCGACCTCTTTTGTGACCCTCC ACAGGACGGCTGGTGCAATTACACCGACTTTTACTTCGAACCCAAGCCCGCGCTCAACATGGCGACCCAGTTCGA CTCGAAATATCTGCCCGACATTGACGGTAACTCCTTCTCGGGCCGCTACCTCGGCTTCTTGCGGTCGAGCTCGCT GCCCATTAAGGCGTCCGTCTGGCGCGAGTGGCACGACAGCCGCCTGGTTCCGTGGAAGCACTTTGTGCCCATGGA CAACCGCTTTTCCGACTATTACGGCATTCTCGACTACTTCATCGGCTCCAACGACCGTGACGGCCACGACGAGGC CGCCGAGAGGATTGCCTCGGACGGAAAGGAGTGGGCGGAGCGGGTGTTGCGCAAGGAGGACATGCTGATCTACGT CTTGCGGCTGCTTCTGGAGTATGCTCGCGTCGTCGACAAGAGGAGAGAGTCGATGGGCTGGGTCGACGACATACT CAAGGACCCGTCCCTGGAGCAGCCGCAGCCTGGACGGTGGTGGTTGCTGTCGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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