© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|4199 |
| Gene name | |
| Location | scaffold_33:51753..54682 |
| Strand | + |
| Gene length (bp) | 2929 |
| Transcript length (bp) | 2700 |
| Coding sequence length (bp) | 2697 |
| Protein length (aa) | 899 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF08558 | TRF | Telomere repeat binding factor (TRF) | 4.7E-21 | 104 | 323 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q6E434|TRF1_SCHPO | Telomeric DNA-binding factor trf1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=trf1 PE=1 SV=1 | 515 | 625 | 1.0E-27 |
| sp|Q5AHJ5|TBF1_CANAL | Transcription factor TBF1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=TBF1 PE=1 SV=1 | 545 | 622 | 4.0E-22 |
| sp|Q02457|TBF1_YEAST | Protein TBF1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TBF1 PE=1 SV=2 | 547 | 625 | 1.0E-17 |
| sp|Q6E434|TRF1_SCHPO | Telomeric DNA-binding factor trf1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=trf1 PE=1 SV=1 | 82 | 319 | 2.0E-09 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0042803 | protein homodimerization activity | Yes |
| GO:0042162 | telomeric DNA binding | Yes |
| GO:0003676 | nucleic acid binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:0005515 | protein binding | No |
| GO:0043565 | sequence-specific DNA binding | No |
| GO:0003674 | molecular_function | No |
| GO:0046983 | protein dimerization activity | No |
| GO:0042802 | identical protein binding | No |
| GO:0003677 | DNA binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 51 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 18.09 | 9.46 | 26.73 |
| CcL | In ants, during behavior modification | 22.70 | 12.28 | 33.11 |
| CcD | In ants, recently dead | 20.73 | 11.07 | 30.38 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.360824 | no |
| SC16a | CcD | 0.605801 | no |
| CcL | CcD | 0.738477 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|4199 MAEPAQLEHVSAPYIKQEYDADVARLTGAKRPLEHDGRGEPEAKRSKTGEDSLEDGLALLVQNALSSVGDLVDQF NAESGPVDAPPEAPRPTFSADPQAFIRDMSLHSLSNVALSLLHIYVQKPLQATVDLIRDAESEHGRCYRQLRHSF EQLRLLYTTKPVMSAKEMDLRRTESRAVVELANLAQLGSWLFDGSAQALAEADDNFLALFSCQVADLPPGLTELY IGIMIQRAVEGLVLKEPEKPAEELLGGLLMEGLEDKLKRQHQGVELTLADQNFIASVQCWKETLGGESREQAVST ALRELHPFKCLLQSFVCHVKRRMRCESHWNGKFGVTLQLDDDDDDDDDEAEADDAALALDNADASCRVTRETAEV ELDLDEISSLLEKETSSLVQNALAGQTEDEVSASDGAQADGGTASTNGKADLMTDYKELEALVAASTSHYVKTTL NGLSPMPYQPTVPQSTAEAMAAQPPYTQQHHQALHPYYPSGPQPPAAEAQAPQQAAPGEDLPPNQTFPSAILYDK ARQAALSKTTAHTRREGLHSTRRPWSQEEEKALMAGLDMVKGPHWSQILTLFGHSGTISDILKDRTQVQLKDKAR NLKLFFLKTNSEMPYYLQAVTGELKTRAPTQAARKEAEVRAKQNSDEDQARLQGIMALAGGLQDPAPPPQAKVVN PAHGAQGAQGAQGAQAAMQPAGLSSAHRPPPAQGGRAGGMVVQATTQQVLQAMPQAPPRPQSQFPRPTTGLQAAV RPRLAPAPSQQPGGVGAGSEPSRPSASGARQPQTTKTQQVEAKAQAQAPQKAPPSPVPPTCPAAPPVAADLTQQQ QQQQQQQQQAPPVPDAPSPASTPSSWTRQGMAQSSASSTTTPSAQTAESTQRDVDGAEAALLEGLQAVVAQTLA |
| Coding | >Ophio5|4199 ATGGCCGAGCCGGCACAGCTTGAGCACGTCAGTGCGCCGTACATAAAGCAGGAATACGACGCCGACGTCGCCCGC CTGACAGGCGCCAAACGGCCCCTCGAGCACGATGGACGAGGCGAACCCGAGGCGAAGCGGTCCAAGACGGGGGAG GACTCTCTCGAGGATGGACTGGCGCTCCTCGTCCAAAACGCCCTATCCAGCGTGGGCGACCTGGTTGACCAGTTC AATGCAGAGTCCGGCCCCGTCGACGCGCCCCCAGAAGCCCCACGACCTACCTTCTCTGCCGATCCGCAGGCCTTT ATTCGCGACATGAGCCTGCATTCCCTGAGTAATGTGGCGCTGTCTTTGTTACACATTTACGTCCAGAAGCCGCTC CAAGCGACCGTGGACTTGATCCGGGACGCCGAGTCCGAACATGGCCGGTGCTACAGGCAGCTGAGACACTCGTTT GAGCAGCTGCGACTACTCTACACCACAAAGCCCGTCATGTCTGCCAAGGAGATGGACCTGCGCCGGACCGAATCG CGAGCCGTGGTTGAGCTGGCCAACCTCGCCCAGCTCGGCTCCTGGCTGTTTGACGGCAGTGCTCAGGCGCTTGCC GAGGCCGACGACAATTTTTTGGCACTGTTCAGCTGCCAGGTCGCCGACTTACCGCCCGGGCTGACAGAGCTCTAC ATCGGCATCATGATCCAGAGAGCGGTCGAGGGTTTGGTGCTCAAGGAGCCCGAGAAGCCGGCCGAGGAATTGCTG GGAGGGTTGTTGATGGAGGGGCTAGAGGACAAGCTCAAGCGGCAGCACCAAGGCGTCGAGCTGACGTTGGCCGAC CAGAACTTCATCGCGTCGGTGCAATGCTGGAAAGAGACTCTGGGGGGCGAGTCGCGAGAGCAAGCGGTGTCGACG GCGCTACGTGAGTTGCATCCTTTCAAGTGTCTGCTGCAATCCTTCGTCTGTCACGTCAAGAGGAGAATGCGGTGT GAATCTCATTGGAACGGCAAATTTGGTGTGACTTTGCAGCTCGACGACGACGACGACGACGACGACGATGAGGCT GAGGCCGACGATGCGGCGCTCGCCCTTGACAATGCCGATGCGTCTTGCCGCGTCACACGGGAGACGGCCGAGGTG GAACTCGACTTGGACGAGATATCGTCTTTGTTGGAAAAGGAGACGAGCAGTCTCGTGCAGAATGCGCTGGCCGGT CAGACGGAAGATGAAGTATCGGCCTCGGACGGGGCCCAGGCGGACGGCGGCACGGCATCGACCAACGGCAAGGCC GACCTCATGACCGACTACAAGGAGCTGGAGGCGCTGGTTGCCGCGAGCACGTCCCATTACGTCAAGACGACGCTC AACGGGCTCTCGCCGATGCCCTACCAGCCGACGGTGCCCCAGAGCACAGCCGAGGCCATGGCAGCCCAACCGCCT TATACGCAGCAGCACCACCAGGCACTGCATCCCTACTACCCGAGCGGCCCGCAGCCCCCGGCGGCGGAGGCGCAG GCCCCTCAACAGGCGGCGCCCGGCGAAGACCTGCCGCCCAACCAGACCTTCCCCAGCGCCATCCTCTACGACAAG GCGCGGCAGGCAGCCCTGTCGAAGACGACGGCGCACACAAGGAGGGAGGGCCTCCACTCGACGCGGCGGCCGTGG TCGCAGGAGGAGGAGAAGGCGTTGATGGCAGGGCTGGACATGGTCAAGGGTCCGCACTGGAGTCAGATCCTGACG CTGTTTGGGCACAGCGGCACCATTTCGGACATTTTGAAGGACCGGACGCAGGTGCAGCTCAAGGACAAGGCGCGG AACCTCAAGCTCTTCTTCCTCAAGACCAACTCGGAGATGCCCTACTACTTGCAAGCCGTCACTGGCGAGCTCAAG ACGAGGGCGCCGACGCAGGCGGCGCGCAAGGAGGCCGAGGTCCGGGCCAAGCAGAACTCGGACGAGGACCAGGCG AGGCTGCAGGGCATCATGGCCCTGGCCGGCGGGCTGCAGGACCCCGCCCCGCCGCCGCAGGCCAAGGTGGTCAAC CCGGCTCATGGGGCTCAGGGGGCTCAGGGGGCTCAGGGGGCCCAGGCGGCGATGCAGCCGGCCGGCCTCTCGTCG GCGCACAGGCCGCCACCGGCTCAGGGCGGCAGGGCCGGCGGTATGGTTGTACAGGCGACGACGCAGCAAGTGCTC CAGGCCATGCCGCAGGCGCCCCCTCGGCCGCAGTCGCAGTTCCCGCGGCCGACGACGGGCTTGCAGGCCGCCGTC CGCCCGAGGCTGGCTCCGGCCCCGAGTCAGCAGCCCGGCGGAGTCGGAGCCGGGTCCGAGCCATCGCGGCCGTCG GCGTCGGGGGCACGACAGCCGCAGACGACAAAAACACAGCAGGTCGAGGCCAAAGCACAGGCTCAGGCGCCGCAA AAAGCACCGCCCTCTCCAGTGCCGCCTACTTGTCCCGCTGCTCCTCCTGTTGCTGCGGACTTGACGCAGCAACAG CAGCAGCAGCAGCAGCAGCAGCAGCAGGCTCCTCCTGTCCCAGACGCCCCTTCACCGGCGTCCACGCCGTCTAGT TGGACACGACAAGGAATGGCACAGTCGTCTGCGTCGTCGACAACGACGCCATCGGCACAGACGGCAGAATCGACG CAGCGCGACGTCGACGGCGCGGAGGCAGCATTGCTGGAAGGCCTCCAGGCTGTGGTGGCACAGACGTTGGCG |
| Transcript | >Ophio5|4199 ATGGCCGAGCCGGCACAGCTTGAGCACGTCAGTGCGCCGTACATAAAGCAGGAATACGACGCCGACGTCGCCCGC CTGACAGGCGCCAAACGGCCCCTCGAGCACGATGGACGAGGCGAACCCGAGGCGAAGCGGTCCAAGACGGGGGAG GACTCTCTCGAGGATGGACTGGCGCTCCTCGTCCAAAACGCCCTATCCAGCGTGGGCGACCTGGTTGACCAGTTC AATGCAGAGTCCGGCCCCGTCGACGCGCCCCCAGAAGCCCCACGACCTACCTTCTCTGCCGATCCGCAGGCCTTT ATTCGCGACATGAGCCTGCATTCCCTGAGTAATGTGGCGCTGTCTTTGTTACACATTTACGTCCAGAAGCCGCTC CAAGCGACCGTGGACTTGATCCGGGACGCCGAGTCCGAACATGGCCGGTGCTACAGGCAGCTGAGACACTCGTTT GAGCAGCTGCGACTACTCTACACCACAAAGCCCGTCATGTCTGCCAAGGAGATGGACCTGCGCCGGACCGAATCG CGAGCCGTGGTTGAGCTGGCCAACCTCGCCCAGCTCGGCTCCTGGCTGTTTGACGGCAGTGCTCAGGCGCTTGCC GAGGCCGACGACAATTTTTTGGCACTGTTCAGCTGCCAGGTCGCCGACTTACCGCCCGGGCTGACAGAGCTCTAC ATCGGCATCATGATCCAGAGAGCGGTCGAGGGTTTGGTGCTCAAGGAGCCCGAGAAGCCGGCCGAGGAATTGCTG GGAGGGTTGTTGATGGAGGGGCTAGAGGACAAGCTCAAGCGGCAGCACCAAGGCGTCGAGCTGACGTTGGCCGAC CAGAACTTCATCGCGTCGGTGCAATGCTGGAAAGAGACTCTGGGGGGCGAGTCGCGAGAGCAAGCGGTGTCGACG GCGCTACGTGAGTTGCATCCTTTCAAGTGTCTGCTGCAATCCTTCGTCTGTCACGTCAAGAGGAGAATGCGGTGT GAATCTCATTGGAACGGCAAATTTGGTGTGACTTTGCAGCTCGACGACGACGACGACGACGACGACGATGAGGCT GAGGCCGACGATGCGGCGCTCGCCCTTGACAATGCCGATGCGTCTTGCCGCGTCACACGGGAGACGGCCGAGGTG GAACTCGACTTGGACGAGATATCGTCTTTGTTGGAAAAGGAGACGAGCAGTCTCGTGCAGAATGCGCTGGCCGGT CAGACGGAAGATGAAGTATCGGCCTCGGACGGGGCCCAGGCGGACGGCGGCACGGCATCGACCAACGGCAAGGCC GACCTCATGACCGACTACAAGGAGCTGGAGGCGCTGGTTGCCGCGAGCACGTCCCATTACGTCAAGACGACGCTC AACGGGCTCTCGCCGATGCCCTACCAGCCGACGGTGCCCCAGAGCACAGCCGAGGCCATGGCAGCCCAACCGCCT TATACGCAGCAGCACCACCAGGCACTGCATCCCTACTACCCGAGCGGCCCGCAGCCCCCGGCGGCGGAGGCGCAG GCCCCTCAACAGGCGGCGCCCGGCGAAGACCTGCCGCCCAACCAGACCTTCCCCAGCGCCATCCTCTACGACAAG GCGCGGCAGGCAGCCCTGTCGAAGACGACGGCGCACACAAGGAGGGAGGGCCTCCACTCGACGCGGCGGCCGTGG TCGCAGGAGGAGGAGAAGGCGTTGATGGCAGGGCTGGACATGGTCAAGGGTCCGCACTGGAGTCAGATCCTGACG CTGTTTGGGCACAGCGGCACCATTTCGGACATTTTGAAGGACCGGACGCAGGTGCAGCTCAAGGACAAGGCGCGG AACCTCAAGCTCTTCTTCCTCAAGACCAACTCGGAGATGCCCTACTACTTGCAAGCCGTCACTGGCGAGCTCAAG ACGAGGGCGCCGACGCAGGCGGCGCGCAAGGAGGCCGAGGTCCGGGCCAAGCAGAACTCGGACGAGGACCAGGCG AGGCTGCAGGGCATCATGGCCCTGGCCGGCGGGCTGCAGGACCCCGCCCCGCCGCCGCAGGCCAAGGTGGTCAAC CCGGCTCATGGGGCTCAGGGGGCTCAGGGGGCTCAGGGGGCCCAGGCGGCGATGCAGCCGGCCGGCCTCTCGTCG GCGCACAGGCCGCCACCGGCTCAGGGCGGCAGGGCCGGCGGTATGGTTGTACAGGCGACGACGCAGCAAGTGCTC CAGGCCATGCCGCAGGCGCCCCCTCGGCCGCAGTCGCAGTTCCCGCGGCCGACGACGGGCTTGCAGGCCGCCGTC CGCCCGAGGCTGGCTCCGGCCCCGAGTCAGCAGCCCGGCGGAGTCGGAGCCGGGTCCGAGCCATCGCGGCCGTCG GCGTCGGGGGCACGACAGCCGCAGACGACAAAAACACAGCAGGTCGAGGCCAAAGCACAGGCTCAGGCGCCGCAA AAAGCACCGCCCTCTCCAGTGCCGCCTACTTGTCCCGCTGCTCCTCCTGTTGCTGCGGACTTGACGCAGCAACAG CAGCAGCAGCAGCAGCAGCAGCAGCAGGCTCCTCCTGTCCCAGACGCCCCTTCACCGGCGTCCACGCCGTCTAGT TGGACACGACAAGGAATGGCACAGTCGTCTGCGTCGTCGACAACGACGCCATCGGCACAGACGGCAGAATCGACG CAGCGCGACGTCGACGGCGCGGAGGCAGCATTGCTGGAAGGCCTCCAGGCTGTGGTGGCACAGACGTTGGCGTGA |
| Gene | >Ophio5|4199 ATGGCCGAGCCGGCACAGCTTGAGCACGTCAGTGCGCCGTGTACGTGTCTTGCAGGGCCGCCTGCCTCTCGGCCC TTTTTTCTCCCCAAAGAAGAGGCTGACGGAGGCACAGACATAAAGCAGGAATACGACGCCGACGTCGCCCGCCTG ACAGGCGCCAAACGGCCCCTCGAGCACGATGGACGAGGCGAACCCGAGGCGAAGCGGTCCAAGACGGGGGAGGAC TCTCTCGAGGATGGACTGGCGCTCCTCGTCCAAAACGCCCTATCCAGCGTGGGCGACCTGGTTGACCAGTTCAAT GCAGAGTCCGGCCCCGTCGACGCGCCCCCAGAAGCCCCACGACCTACCTTCTCTGCCGATCCGCAGGCCTTTATT CGCGACATGAGCCTGCATTCCCTGAGTAATGTGGTACGTCTTACGTCGGCGCCTTGATATAGTTGCGGCGACGCT GACGGCGCAGGCGCTGTCTTTGTTACACATTTACGTCCAGAAGCCGCTCCAAGCGACCGTGGACTTGATCCGGGA CGCCGAGTCCGAACATGGCCGGTGCTACAGGCAGCTGAGACACTCGTTTGAGCAGCTGCGACTACTCTACACCAC AAAGCCCGTCATGTCTGCCAAGGAGATGGACCTGCGCCGGACCGAATCGCGAGCCGTGGTTGAGCTGGCCAACCT CGCCCAGCTCGGCTCCTGGCTGTTTGACGGCAGTGCTCAGGCGCTTGCCGAGGCCGACGACAATTTTTTGGCACT GTTCAGCTGCCAGGTCGCCGACTTACCGCCCGGGCTGACAGAGCTCTACATCGGCATCATGATCCAGAGAGCGGT CGAGGGTTTGGTGCTCAAGGAGCCCGAGAAGCCGGCCGAGGAATTGCTGGGAGGGTTGTTGATGGAGGGGCTAGA GGACAAGCTCAAGCGGCAGCACCAAGGCGTCGAGCTGACGTTGGCCGACCAGAACTTCATCGCGTCGGTGCAATG CTGGAAAGAGACTCTGGGGGGCGAGTCGCGAGAGCAAGCGGTGTCGAGTATGTGTGTCTCTCTGTTGAGTCGAGT CGGGAGGCTGACGACGCCCTCTAGCGGCGCTACGTGAGTTGCATCCTTTCAAGTGTCTGCTGCAATCCTTCGTCT GTCACGTCAAGAGGAGAATGCGGTGTGAATCTCATTGGAACGGCAAATTTGGTGTGACTTTGCAGCTCGACGACG ACGACGACGACGACGACGATGAGGCTGAGGCCGACGATGCGGCGCTCGCCCTTGACAATGCCGATGCGTCTTGCC GCGTCACACGGGAGACGGCCGAGGTGGAACTCGACTTGGACGAGATATCGTCTTTGTTGGAAAAGGAGACGAGCA GTCTCGTGCAGAATGCGCTGGCCGGTCAGACGGAAGATGAAGTATCGGCCTCGGACGGGGCCCAGGCGGACGGCG GCACGGCATCGACCAACGGCAAGGCCGACCTCATGACCGACTACAAGGAGCTGGAGGCGCTGGTTGCCGCGAGCA CGTCCCATTACGTCAAGACGACGCTCAACGGGCTCTCGCCGATGCCCTACCAGCCGACGGTGCCCCAGAGCACAG GTGAGTGGGCGTGAACGCTCTCAGGAGAGGTGGTGAGGCCTGACGCCGCACAGCCGAGGCCATGGCAGCCCAACC GCCTTATACGCAGCAGCACCACCAGGCACTGCATCCCTACTACCCGAGCGGCCCGCAGCCCCCGGCGGCGGAGGC GCAGGCCCCTCAACAGGCGGCGCCCGGCGAAGACCTGCCGCCCAACCAGACCTTCCCCAGCGCCATCCTCTACGA CAAGGCGCGGCAGGCAGCCCTGTCGAAGACGACGGCGCACACAAGGAGGGAGGGCCTCCACTCGACGCGGCGGCC GTGGTCGCAGGAGGAGGAGAAGGCGTTGATGGCAGGGCTGGACATGGTCAAGGGTCCGCACTGGAGTCAGATCCT GACGCTGTTTGGGCACAGCGGCACCATTTCGGACATTTTGAAGGACCGGACGCAGGTGCAGCTCAAGGACAAGGC GCGGAACCTCAAGCTCTTCTTCCTCAAGACCAACTCGGAGATGCCCTACTACTTGCAAGCCGTCACTGGCGAGCT CAAGACGAGGGCGCCGACGCAGGCGGCGCGCAAGGAGGCCGAGGTCCGGGCCAAGCAGAACTCGGACGAGGACCA GGCGAGGCTGCAGGGCATCATGGCCCTGGCCGGCGGGCTGCAGGACCCCGCCCCGCCGCCGCAGGCCAAGGTGGT CAACCCGGCTCATGGGGCTCAGGGGGCTCAGGGGGCTCAGGGGGCCCAGGCGGCGATGCAGCCGGCCGGCCTCTC GTCGGCGCACAGGCCGCCACCGGCTCAGGGCGGCAGGGCCGGCGGTATGGTTGTACAGGCGACGACGCAGCAAGT GCTCCAGGCCATGCCGCAGGCGCCCCCTCGGCCGCAGTCGCAGTTCCCGCGGCCGACGACGGGCTTGCAGGCCGC CGTCCGCCCGAGGCTGGCTCCGGCCCCGAGTCAGCAGCCCGGCGGAGTCGGAGCCGGGTCCGAGCCATCGCGGCC GTCGGCGTCGGGGGCACGACAGCCGCAGACGACAAAAACACAGCAGGTCGAGGCCAAAGCACAGGCTCAGGCGCC GCAAAAAGCACCGCCCTCTCCAGTGCCGCCTACTTGTCCCGCTGCTCCTCCTGTTGCTGCGGACTTGACGCAGCA ACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGCTCCTCCTGTCCCAGACGCCCCTTCACCGGCGTCCACGCCGTC TAGTTGGACACGACAAGGAATGGCACAGTCGTCTGCGTCGTCGACAACGACGCCATCGGCACAGACGGCAGAATC GACGCAGCGCGACGTCGACGGCGCGGAGGCAGCATTGCTGGAAGGCCTCCAGGCTGTGGTGGCACAGACGTTGGC GTGA |