Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|4189
Gene name
Locationscaffold_33:26619..28090
Strand-
Gene length (bp)1471
Transcript length (bp)993
Coding sequence length (bp)990
Protein length (aa) 330

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04982 HPP HPP family 2.0E-42 82 206

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|Q55EF8|Y9096_DICDI Transmembrane protein DDB_G0269096 OS=Dictyostelium discoideum GN=DDB_G0269096 PE=4 SV=1 81 210 7.0E-21
sp|Q556Z9|Y3361_DICDI Transmembrane protein DDB_G0273707/DDB_G0273361 OS=Dictyostelium discoideum GN=DDB_G0273707 PE=4 SV=2 75 210 1.0E-19

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 22 0.5

Transmembrane Domains

Domain # Start End Length
1 46 68 22
2 108 127 19
3 134 156 22
4 176 198 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|4189
MAYREWDWDIDRYLNRFIPPPPWHRLPPPVARLLGYRQNKLPSTGNILPLIWAFIGITLTISIIEAATKSVPDFV
ANDGPIIVGSFGASAVLEFLVIESPLAQPRNAVGGHIIATITGVIISKLFQLSSNFNDIRWLGGALACATATVLM
ALTKTVHPPAGATALSAVVDAKLVDLGWRLVPVVMLGSTLMLGMSLLINNIDRRFPLYWWTPLDLGQTSVSRPGD
APEQFEAKLEEGSSNGNEYNVKRVSNGEIRPDAGKPVRNPPPAYPKEETQGGTGRKYPEYSLFTEAQQSYPTRSH
LIHDFEVTIRPGKIFVPESDDNKLDGFYES
Coding >Ophio5|4189
ATGGCATATCGTGAGTGGGATTGGGATATCGACCGTTATCTCAATCGCTTCATACCGCCGCCGCCATGGCATCGA
CTTCCCCCCCCTGTAGCCCGCCTCCTCGGATACCGACAGAACAAATTACCAAGCACAGGCAACATATTGCCTCTG
ATATGGGCATTTATCGGTATCACTTTGACCATCTCCATCATTGAGGCCGCGACGAAGAGTGTGCCTGATTTTGTG
GCCAACGACGGGCCTATAATCGTTGGATCATTTGGTGCATCTGCGGTGTTAGAGTTCCTCGTCATCGAGTCTCCT
TTAGCACAACCTCGCAATGCCGTCGGCGGCCACATCATTGCGACTATAACAGGAGTCATCATTTCCAAGCTCTTT
CAACTGAGCAGCAACTTCAATGACATTCGCTGGTTGGGAGGCGCCTTGGCGTGCGCTACAGCAACAGTCCTCATG
GCTCTCACCAAAACCGTGCATCCACCAGCGGGTGCAACTGCGCTCTCGGCAGTTGTTGACGCGAAACTGGTTGAC
CTCGGATGGCGACTGGTTCCTGTCGTGATGCTGGGAAGCACCTTGATGCTGGGCATGTCGTTGCTCATTAACAAC
ATAGACCGTCGCTTCCCGTTATACTGGTGGACTCCCTTGGATCTCGGCCAGACCTCGGTTTCCAGGCCAGGTGAT
GCACCAGAACAGTTTGAAGCAAAATTGGAGGAGGGCTCGTCAAATGGGAACGAATACAATGTGAAAAGAGTGTCA
AACGGGGAGATTCGTCCCGATGCGGGAAAACCAGTTCGCAATCCGCCGCCTGCATACCCAAAGGAAGAAACTCAA
GGGGGTACGGGAAGAAAATATCCGGAATATTCGTTGTTCACAGAGGCACAACAATCGTATCCCACGAGGTCTCAC
CTGATCCATGACTTTGAAGTCACTATCAGGCCGGGCAAGATCTTTGTGCCAGAGAGTGACGACAACAAACTGGAT
GGCTTTTACGAGAGC
Transcript >Ophio5|4189
ATGGCATATCGTGAGTGGGATTGGGATATCGACCGTTATCTCAATCGCTTCATACCGCCGCCGCCATGGCATCGA
CTTCCCCCCCCTGTAGCCCGCCTCCTCGGATACCGACAGAACAAATTACCAAGCACAGGCAACATATTGCCTCTG
ATATGGGCATTTATCGGTATCACTTTGACCATCTCCATCATTGAGGCCGCGACGAAGAGTGTGCCTGATTTTGTG
GCCAACGACGGGCCTATAATCGTTGGATCATTTGGTGCATCTGCGGTGTTAGAGTTCCTCGTCATCGAGTCTCCT
TTAGCACAACCTCGCAATGCCGTCGGCGGCCACATCATTGCGACTATAACAGGAGTCATCATTTCCAAGCTCTTT
CAACTGAGCAGCAACTTCAATGACATTCGCTGGTTGGGAGGCGCCTTGGCGTGCGCTACAGCAACAGTCCTCATG
GCTCTCACCAAAACCGTGCATCCACCAGCGGGTGCAACTGCGCTCTCGGCAGTTGTTGACGCGAAACTGGTTGAC
CTCGGATGGCGACTGGTTCCTGTCGTGATGCTGGGAAGCACCTTGATGCTGGGCATGTCGTTGCTCATTAACAAC
ATAGACCGTCGCTTCCCGTTATACTGGTGGACTCCCTTGGATCTCGGCCAGACCTCGGTTTCCAGGCCAGGTGAT
GCACCAGAACAGTTTGAAGCAAAATTGGAGGAGGGCTCGTCAAATGGGAACGAATACAATGTGAAAAGAGTGTCA
AACGGGGAGATTCGTCCCGATGCGGGAAAACCAGTTCGCAATCCGCCGCCTGCATACCCAAAGGAAGAAACTCAA
GGGGGTACGGGAAGAAAATATCCGGAATATTCGTTGTTCACAGAGGCACAACAATCGTATCCCACGAGGTCTCAC
CTGATCCATGACTTTGAAGTCACTATCAGGCCGGGCAAGATCTTTGTGCCAGAGAGTGACGACAACAAACTGGAT
GGCTTTTACGAGAGCTGA
Gene >Ophio5|4189
ATGGCATATCGTGAGTGGGATTGGGATATCGACCGTTATCTCAATCGCTTCATACCGCCGCCGCCATGGCATCGA
CTTCCCCCCCCTGTAGCCCGCCTCCTCGGATACCGACAGAACAAATTACCAAGCACAGGCAACATATTGCCTCTG
ATATGGGCATTTATCGGTATCACTTTGACCATCTCCATCATTGAGGCCGCGACGAAGAGTGTGCCTGATTTTGTG
GCCAACGACGGGCCTATAATCGTTGGATCATTTGTGAGTTTATATACACGTTATACACGTCTATTCGACACTCTG
CATGGGCAGCACTGGTAAAGGCAAACCTGGATGATCAGATCAAGCTAAATGTTCACGTTGCTGACCATGGCTGCC
TCGAAAGGGTGCATCTGCGGTGTTAGAGTTCCTCGTCATCGAGTCTCCTTTAGCACAACCTCGCAATGCCGTCGG
CGGCCACATCATTGCGACTATAACAGGAGTCATCATTTCCAAGCTCTTTCAACTGAGCAGCAACTTCAATGACAT
TCGCTGGTTGGGAGGCGCCTTGGCGTGCGCTACAGCAACAGTCCTCATGGCTCTCACCAAAACCGTGCATCCACC
AGCGGGTGCAACTGCGCTCTCGGCAGTTGTTGACGCGAAACTGGTTGACCTCGGATGGCGACTGGTTCCTGTCGT
GATGCTGGGAAGCACCTTGATGCTGGGCATGTCGTTGCTCATTAACAACATAGACCGTCGCTTCCCGTTATACTG
GTGGACTCCCTTGGATCTCGGCCAGACCTCGGTTTCCAGGCCAGGTGATGCACCAGAACAGTTTGAAGCAAAATT
GGAGGAGGGCTCGTCAAATGGGAACGAATACAATGTGAAAAGAGTGTCAAACGGGGAGATTCGTCCCGATGCGGG
AAAACCAGTTCGCAATCCGCCGCCTGCATACCCAAAGGAAGAAACTCAAGGGGGTACGGGAAGAAAATATCCGGA
ATATTCGTTGTTCACAGAGGCACAACAATCGTATCCCACGAGGTCTCACCTGATCCATGACTTTGAAGTCACTAT
CAGGCCGGGCAAGATCTTTGTGCCAGAGAGTATGTTCCTGGCCGAGGAGGACAAAAGAATACTGCAGCTTATAAG
CCATAAATTACGCTTCTTAGAATTAGCTACGAAAAGAGATTGTAGACTTTGACCATACAGGATGCAGTGCTCCTA
TGCCATGTACACACTCTTTACGGTGTAATTCCTCGTTTCTTTCACGCAATTTTTGCTTTCTGTGTCTGTAATGAA
GCTCTGTAAGAGGTCTGTGCGTCTCAGTGCAGGCGCGAGCAGTCTTACAGGCATAGAGAGACGGGAAACCGAAGT
AGGAAAAGAGTTCATACAGCACAGTTACATATTATAAGAAAGTGCTTGAGAATTTGCCCTGTAGATGCTGAGGCT
ACGTTTAGGTGACGACAACAAACTGGATGGCTTTTACGAGAGCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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